Wall clock time and date at job start Tue Mar 31 2020 11:53:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50701 * 119.99873 * 2 1 4 4 N 1.46498 * 109.47310 * 124.72187 * 3 2 1 5 5 C 1.36740 * 127.13605 * 88.50372 * 4 3 2 6 6 C 1.50699 * 126.34833 * 0.02562 * 5 4 3 7 7 H 1.08999 * 109.47027 * 359.97438 * 6 5 4 8 8 C 1.53005 * 109.47016 * 239.99843 * 6 5 4 9 9 C 1.53000 * 109.47510 * 119.99601 * 6 5 4 10 10 C 1.50697 * 109.47191 * 184.99971 * 9 6 5 11 11 H 1.07996 * 120.00345 * 0.02562 * 10 9 6 12 12 C 1.37877 * 119.99915 * 179.97438 * 10 9 6 13 13 N 1.31520 * 119.99832 * 0.02562 * 12 10 9 14 14 Si 1.86793 * 120.00144 * 179.97438 * 12 10 9 15 15 H 1.48507 * 109.47019 * 90.00561 * 14 12 10 16 16 H 1.48503 * 109.47341 * 210.00296 * 14 12 10 17 17 H 1.48494 * 109.47315 * 330.00395 * 14 12 10 18 18 N 1.30294 * 107.30193 * 179.97438 * 5 4 3 19 19 N 1.28523 * 110.05609 * 0.02562 * 18 5 4 20 20 C 1.31217 * 109.85971 * 359.74871 * 19 18 5 21 21 N 1.38577 * 126.47461 * 180.25635 * 20 19 18 22 22 C 1.46835 * 111.00089 * 62.75813 * 21 20 19 23 23 C 1.53292 * 109.40028 * 170.25035 * 22 21 20 24 24 C 1.51433 * 108.24634 * 53.78909 * 23 22 21 25 25 C 1.31004 * 121.10799 * 130.95156 * 24 23 22 26 26 C 1.51430 * 117.77886 * 310.97704 * 24 23 22 27 27 C 1.46829 * 111.00269 * 298.07233 * 21 20 19 28 28 H 1.08004 * 120.00211 * 0.28435 * 1 2 3 29 29 H 1.07997 * 120.00147 * 180.27608 * 1 2 3 30 30 H 1.08004 * 119.99685 * 179.71643 * 2 1 3 31 31 H 1.08998 * 109.46540 * 244.72236 * 3 2 1 32 32 H 1.08994 * 109.46851 * 4.71585 * 3 2 1 33 33 H 1.08999 * 109.46932 * 299.99702 * 8 6 5 34 34 H 1.08993 * 109.47247 * 59.99807 * 8 6 5 35 35 H 1.08993 * 109.46976 * 179.97438 * 8 6 5 36 36 H 1.09000 * 109.46575 * 304.99823 * 9 6 5 37 37 H 1.08997 * 109.46610 * 64.99383 * 9 6 5 38 38 H 0.97002 * 119.99901 * 179.97438 * 13 12 10 39 39 H 1.08998 * 109.48109 * 290.22840 * 22 21 20 40 40 H 1.09003 * 109.48092 * 50.27048 * 22 21 20 41 41 H 1.09004 * 109.71075 * 294.10286 * 23 22 21 42 42 H 1.08998 * 109.71039 * 173.48025 * 23 22 21 43 43 H 1.08001 * 120.00059 * 180.02562 * 25 24 23 44 44 H 1.08001 * 120.00198 * 0.02562 * 25 24 23 45 45 H 1.08995 * 109.71137 * 289.33530 * 26 24 23 46 46 H 1.09009 * 109.74648 * 168.73163 * 26 24 23 47 47 H 1.09004 * 109.48200 * 309.73519 * 27 21 20 48 48 H 1.09004 * 109.48222 * 69.75431 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9890 1.3347 1.1352 5 6 4.2775 0.8777 1.1620 6 6 5.0235 0.2416 0.0176 7 1 4.3753 0.1951 -0.8575 8 6 5.4505 -1.1740 0.4111 9 6 6.2636 1.0759 -0.3095 10 6 6.9420 0.5102 -1.5304 11 1 6.5298 -0.3574 -2.0240 12 6 8.0885 1.1009 -2.0179 13 7 8.5903 2.1578 -1.4171 14 14 8.9299 0.3992 -3.5308 15 1 8.3773 1.0448 -4.7487 16 1 10.3897 0.6603 -3.4513 17 1 8.6918 -1.0651 -3.5953 18 7 4.7409 1.0951 2.3602 19 7 3.8398 1.6536 3.0867 20 6 2.7458 1.8287 2.3837 21 7 1.5654 2.4043 2.8263 22 6 1.7746 3.8066 3.2081 23 6 0.4174 4.4745 3.4568 24 6 -0.3443 3.6395 4.4647 25 6 -0.9096 4.1899 5.5105 26 6 -0.4300 2.1469 4.2238 27 6 0.9810 1.6269 3.9263 28 1 -0.5401 0.9353 -0.0046 29 1 -0.5400 -0.9353 0.0045 30 1 1.8500 -0.9354 0.0046 31 1 2.6251 1.4003 -0.9293 32 1 1.3582 2.1318 0.0845 33 1 6.0986 -1.1279 1.2863 34 1 4.5671 -1.7684 0.6441 35 1 5.9897 -1.6342 -0.4168 36 1 5.9670 2.1067 -0.5035 37 1 6.9526 1.0488 0.5346 38 1 9.3971 2.5731 -1.7598 39 1 2.3734 3.8502 4.1177 40 1 2.2947 4.3284 2.4047 41 1 -0.1435 4.5262 2.5236 42 1 0.5689 5.4792 3.8514 43 1 -1.4482 3.5773 6.2183 44 1 -0.8372 5.2564 5.6648 45 1 -1.0818 1.9487 3.3729 46 1 -0.8244 1.6526 5.1117 47 1 0.9287 0.5761 3.6412 48 1 1.6024 1.7317 4.8157 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339498536.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:29 Heat of formation + Delta-G solvation = 95.557744 kcal Electronic energy + Delta-G solvation = -26992.666165 eV Core-core repulsion = 23469.901553 eV Total energy + Delta-G solvation = -3522.764612 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.05753 -40.06665 -37.35072 -36.92212 -35.59234 -34.26096 -33.59158 -32.25341 -30.67863 -29.02991 -28.30748 -27.61361 -25.91098 -24.56216 -24.05338 -23.34687 -21.99864 -21.18668 -20.51889 -19.15981 -18.65909 -18.32483 -17.43740 -17.20001 -16.50735 -16.20805 -15.88838 -15.68444 -15.54444 -15.32111 -15.01169 -14.59282 -14.49201 -14.28306 -14.14128 -13.66108 -13.55011 -13.44796 -13.04095 -12.91564 -12.82175 -12.75270 -12.47880 -12.41070 -12.29987 -12.26854 -12.05141 -11.88397 -11.60994 -11.46886 -11.41769 -11.19245 -11.05132 -10.55622 -10.50904 -10.14135 -9.97845 -9.75902 -8.16640 -6.28447 0.68525 0.93306 1.36502 1.43419 1.45330 1.55889 1.57591 1.77120 2.43417 2.66253 3.17436 3.43142 3.60609 3.68380 3.71948 3.85079 3.95927 4.09273 4.10828 4.20114 4.22856 4.35382 4.36007 4.40636 4.51127 4.55672 4.58243 4.63811 4.71617 4.77094 4.86314 4.94874 5.01769 5.02803 5.07498 5.10356 5.14008 5.16404 5.35212 5.44417 5.51674 5.61578 5.63771 5.67122 5.72010 5.75468 5.82989 5.97043 6.18986 6.22850 6.87230 7.40786 7.70889 8.95947 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.020417 B = 0.003151 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.065526 B = 8882.912481 C = 9419.499624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.198 4.198 3 C 0.134 3.866 4 N -0.458 5.458 5 C 0.207 3.793 6 C 0.010 3.990 7 H 0.094 0.906 8 C -0.117 4.117 9 C 0.051 3.949 10 C -0.528 4.528 11 H 0.077 0.923 12 C -0.003 4.003 13 N -0.937 5.937 14 Si 0.967 3.033 15 H -0.272 1.272 16 H -0.289 1.289 17 H -0.256 1.256 18 N -0.329 5.329 19 N -0.351 5.351 20 C 0.340 3.660 21 N -0.447 5.447 22 C 0.069 3.931 23 C -0.070 4.070 24 C -0.140 4.140 25 C -0.185 4.185 26 C -0.069 4.069 27 C 0.074 3.926 28 H 0.116 0.884 29 H 0.120 0.880 30 H 0.105 0.895 31 H 0.101 0.899 32 H 0.119 0.881 33 H 0.040 0.960 34 H 0.061 0.939 35 H 0.075 0.925 36 H -0.022 1.022 37 H -0.011 1.011 38 H 0.262 0.738 39 H 0.036 0.964 40 H 0.066 0.934 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.109 0.891 44 H 0.106 0.894 45 H 0.092 0.908 46 H 0.094 0.906 47 H 0.072 0.928 48 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.574 -0.336 6.521 26.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.217 4.217 3 C 0.014 3.986 4 N -0.149 5.149 5 C -0.062 4.062 6 C -0.011 4.011 7 H 0.112 0.888 8 C -0.175 4.175 9 C 0.013 3.987 10 C -0.565 4.565 11 H 0.095 0.905 12 C -0.200 4.200 13 N -0.578 5.578 14 Si 0.791 3.209 15 H -0.197 1.197 16 H -0.215 1.215 17 H -0.180 1.180 18 N -0.169 5.169 19 N -0.195 5.195 20 C -0.018 4.018 21 N -0.174 5.174 22 C -0.058 4.058 23 C -0.107 4.107 24 C -0.140 4.140 25 C -0.221 4.221 26 C -0.106 4.106 27 C -0.053 4.053 28 H 0.134 0.866 29 H 0.138 0.862 30 H 0.123 0.877 31 H 0.119 0.881 32 H 0.137 0.863 33 H 0.059 0.941 34 H 0.080 0.920 35 H 0.094 0.906 36 H -0.003 1.003 37 H 0.008 0.992 38 H 0.070 0.930 39 H 0.054 0.946 40 H 0.084 0.916 41 H 0.109 0.891 42 H 0.110 0.890 43 H 0.127 0.873 44 H 0.124 0.876 45 H 0.111 0.889 46 H 0.113 0.887 47 H 0.091 0.909 48 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -24.838 -0.184 7.306 25.891 hybrid contribution 0.993 0.135 -0.943 1.376 sum -23.845 -0.050 6.363 24.680 Atomic orbital electron populations 1.24132 0.94501 1.03792 0.94524 1.22915 0.97040 0.96667 1.05115 1.21206 0.91686 0.99282 0.86469 1.46578 1.11922 1.44642 1.11786 1.25389 0.82926 1.00323 0.97565 1.19752 0.95542 0.95739 0.90105 0.88795 1.21575 1.00734 0.93414 1.01751 1.18843 0.91278 0.92944 0.95652 1.21562 1.09692 1.13760 1.11528 0.90505 1.26023 0.98130 0.95222 1.00628 1.70158 1.22522 1.22796 1.42278 0.85419 0.77104 0.79454 0.78912 1.19699 1.21519 1.17996 1.73950 1.23602 1.17151 1.02154 1.74449 0.99195 1.18707 1.27126 1.22524 0.93577 1.01409 0.84247 1.58663 1.17280 1.03176 1.38258 1.22193 0.98847 0.85236 0.99531 1.20860 0.92553 0.97783 0.99544 1.21992 0.99160 0.95774 0.97049 1.23803 1.00132 1.01387 0.96798 1.20864 0.94012 0.92328 1.03421 1.22162 0.96165 0.96771 0.90209 0.86588 0.86212 0.87672 0.88077 0.86282 0.94123 0.92017 0.90625 1.00340 0.99214 0.92971 0.94585 0.91579 0.89052 0.89013 0.87263 0.87599 0.88918 0.88714 0.90932 0.94691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.83 14.32 67.78 0.97 -0.86 16 2 C -0.20 -3.95 9.85 25.64 0.25 -3.70 16 3 C 0.13 3.25 6.29 85.63 0.54 3.79 16 4 N -0.46 -15.35 2.79 -518.93 -1.45 -16.80 16 5 C 0.21 8.57 6.58 137.64 0.91 9.47 16 6 C 0.01 0.40 2.71 -11.54 -0.03 0.37 16 7 H 0.09 3.49 6.98 -2.39 -0.02 3.47 16 8 C -0.12 -4.44 8.99 71.98 0.65 -3.79 16 9 C 0.05 2.75 4.43 29.85 0.13 2.89 16 10 C -0.53 -28.98 8.41 25.60 0.22 -28.76 16 11 H 0.08 3.86 7.06 -2.91 -0.02 3.84 16 12 C 0.00 -0.14 5.46 84.65 0.46 0.32 16 13 N -0.94 -58.24 13.29 21.45 0.28 -57.95 16 14 Si 0.97 43.60 29.54 68.60 2.03 45.63 16 15 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 16 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 17 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16 18 N -0.33 -15.47 12.18 -49.54 -0.60 -16.07 16 19 N -0.35 -14.92 12.19 -58.01 -0.71 -15.62 16 20 C 0.34 11.58 6.35 260.12 1.65 13.23 16 21 N -0.45 -11.28 4.59 -705.24 -3.23 -14.52 16 22 C 0.07 1.63 5.43 86.41 0.47 2.10 16 23 C -0.07 -1.11 6.21 30.18 0.19 -0.92 16 24 C -0.14 -2.07 5.41 -16.03 -0.09 -2.15 16 25 C -0.18 -2.28 14.01 67.78 0.95 -1.33 16 26 C -0.07 -0.99 6.20 30.18 0.19 -0.80 16 27 C 0.07 1.61 5.43 86.42 0.47 2.08 16 28 H 0.12 1.29 7.84 -2.91 -0.02 1.26 16 29 H 0.12 1.28 8.06 -2.91 -0.02 1.26 16 30 H 0.11 2.30 8.06 -2.91 -0.02 2.28 16 31 H 0.10 2.50 7.29 -2.39 -0.02 2.48 16 32 H 0.12 2.39 7.79 -2.39 -0.02 2.38 16 33 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.07 2.84 6.95 -2.39 -0.02 2.82 16 36 H -0.02 -1.31 8.14 -2.39 -0.02 -1.33 16 37 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 38 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 39 H 0.04 0.98 8.10 -2.39 -0.02 0.96 16 40 H 0.07 1.71 8.06 -2.39 -0.02 1.69 16 41 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.09 1.22 7.93 -2.39 -0.02 1.20 16 43 H 0.11 1.10 7.95 -2.91 -0.02 1.08 16 44 H 0.11 1.14 7.95 -2.91 -0.02 1.12 16 45 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 46 H 0.09 1.06 7.93 -2.38 -0.02 1.04 16 47 H 0.07 1.63 8.06 -2.38 -0.02 1.61 16 48 H 0.03 0.89 8.10 -2.38 -0.02 0.87 16 Total: -1.00 -74.14 393.23 5.15 -68.99 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: 0.91 Total: 14.42 kcal Atomic # 6 Polarization: -16.00 SS G_CDS: 7.92 Total: -8.08 kcal Atomic # 7 Polarization: -115.25 SS G_CDS: -5.71 Total: -120.96 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -74.14 5.15 -68.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339498536.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.549 kcal (2) G-P(sol) polarization free energy of solvation -74.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds