Wall clock time and date at job start Tue Mar 31 2020 11:26:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36456 * 127.13885 * 2 1 4 4 N 1.38589 * 126.47148 * 359.97438 * 3 2 1 5 5 C 1.48569 * 110.99772 * 300.88390 * 4 3 2 6 6 C 1.53747 * 103.24925 * 213.42446 * 5 4 3 7 7 H 1.08990 * 109.14786 * 286.58481 * 6 5 4 8 8 C 1.50167 * 113.94842 * 164.21514 * 6 5 4 9 9 C 1.49623 * 113.16821 * 284.00029 * 8 6 5 10 10 C 1.29199 * 123.41204 * 347.00256 * 9 8 6 11 11 C 1.48045 * 124.60854 * 1.26456 * 10 9 8 12 12 C 1.53155 * 113.43092 * 343.26726 * 11 10 9 13 13 H 1.08997 * 113.65314 * 273.63968 * 12 11 10 14 14 C 1.47909 * 111.00082 * 180.29289 * 4 3 2 15 15 N 1.31214 * 107.05491 * 180.25804 * 3 2 1 16 16 N 1.28526 * 109.85868 * 359.73859 * 15 3 2 17 17 C 1.30296 * 110.05787 * 359.97438 * 16 15 3 18 18 C 1.50693 * 126.34896 * 180.02562 * 17 16 15 19 19 C 1.53003 * 109.47146 * 118.78544 * 18 17 16 20 20 C 1.53006 * 109.47141 * 358.78471 * 18 17 16 21 21 C 1.50700 * 109.47237 * 238.78593 * 18 17 16 22 22 H 1.08005 * 119.99927 * 359.97438 * 21 18 17 23 23 C 1.37875 * 120.00056 * 180.02562 * 21 18 17 24 24 N 1.31512 * 120.00212 * 359.97438 * 23 21 18 25 25 Si 1.86803 * 119.99979 * 180.02562 * 23 21 18 26 26 H 1.48501 * 109.47141 * 59.99399 * 25 23 21 27 27 H 1.48492 * 109.47138 * 179.97438 * 25 23 21 28 28 H 1.48510 * 109.46751 * 299.99666 * 25 23 21 29 29 H 1.09003 * 109.47541 * 272.12559 * 1 2 3 30 30 H 1.09002 * 109.47089 * 32.12564 * 1 2 3 31 31 H 1.09004 * 109.47356 * 152.12822 * 1 2 3 32 32 H 1.08998 * 110.66622 * 331.86814 * 5 4 3 33 33 H 1.09005 * 110.66035 * 94.98787 * 5 4 3 34 34 H 1.08999 * 108.74302 * 44.94833 * 8 6 5 35 35 H 1.09001 * 108.74666 * 163.04560 * 8 6 5 36 36 H 1.08001 * 118.29282 * 167.03516 * 9 8 6 37 37 H 1.08007 * 117.68441 * 181.89696 * 10 9 8 38 38 H 1.09005 * 109.25375 * 221.69237 * 11 10 9 39 39 H 1.08999 * 107.74253 * 103.77727 * 11 10 9 40 40 H 1.09004 * 110.06194 * 238.84887 * 14 4 3 41 41 H 1.09002 * 110.06001 * 0.34566 * 14 4 3 42 42 H 1.08997 * 109.47112 * 66.51509 * 19 18 17 43 43 H 1.08999 * 109.46990 * 306.51019 * 19 18 17 44 44 H 1.08997 * 109.47130 * 186.51607 * 19 18 17 45 45 H 1.09003 * 109.46785 * 179.97438 * 20 18 17 46 46 H 1.08995 * 109.47089 * 299.99997 * 20 18 17 47 47 H 1.08995 * 109.46694 * 60.00230 * 20 18 17 48 48 H 0.97001 * 120.00592 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2888 1.0878 0.0000 4 7 1.8978 2.4174 -0.0005 5 6 1.0649 2.7269 -1.1912 6 6 1.4375 4.1834 -1.5129 7 1 0.9846 4.8406 -0.7706 8 6 1.0238 4.6295 -2.8858 9 6 1.9069 4.0956 -3.9692 10 6 3.0499 3.5367 -3.7447 11 6 3.6313 3.3222 -2.4002 12 6 2.9694 4.1680 -1.3084 13 1 3.3983 5.1650 -1.2073 14 6 3.0729 3.3155 -0.0074 15 7 3.5212 0.6372 -0.0056 16 7 3.5161 -0.6480 -0.0036 17 6 2.2905 -1.0901 0.0039 18 6 1.8621 -2.5348 0.0092 19 6 1.0581 -2.8238 1.2784 20 6 3.0997 -3.4339 -0.0264 21 6 1.0067 -2.8096 -1.2008 22 1 0.7942 -2.0170 -1.9031 23 6 0.4946 -4.0724 -1.4107 24 7 0.7530 -5.0373 -0.5553 25 14 -0.5651 -4.4131 -2.9108 26 1 0.2160 -4.1333 -4.1425 27 1 -0.9873 -5.8367 -2.9057 28 1 -1.7659 -3.5399 -2.8772 29 1 -0.3634 0.0381 1.0270 30 1 -0.3633 0.8703 -0.5465 31 1 -0.3634 -0.9085 -0.4804 32 1 1.3236 2.0711 -2.0226 33 1 0.0049 2.6451 -0.9509 34 1 0.0027 4.2954 -3.0697 35 1 1.0451 5.7187 -2.9215 36 1 1.5716 4.1824 -4.9922 37 1 3.6260 3.2120 -4.5986 38 1 4.6960 3.5544 -2.4277 39 1 3.5101 2.2682 -2.1502 40 1 3.0523 3.9649 0.8679 41 1 3.9917 2.7291 -0.0167 42 1 0.1201 -2.2694 1.2484 43 1 1.6341 -2.5165 2.1512 44 1 0.8473 -3.8915 1.3398 45 1 2.7897 -4.4789 -0.0222 46 1 3.6724 -3.2280 -0.9306 47 1 3.7182 -3.2352 0.8487 48 1 0.3924 -5.9257 -0.7027 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339866191.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:32 Heat of formation + Delta-G solvation = 106.789797 kcal Electronic energy + Delta-G solvation = -28234.922766 eV Core-core repulsion = 24712.645212 eV Total energy + Delta-G solvation = -3522.277554 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.30829 -40.36757 -36.20030 -35.56325 -34.01688 -31.90607 -31.67051 -30.87624 -28.08831 -27.33775 -26.87931 -25.68995 -25.32571 -24.26412 -22.19368 -21.77359 -21.12544 -20.01721 -18.88554 -17.31232 -16.91018 -16.53692 -16.16630 -15.83223 -15.07361 -15.04243 -14.83333 -14.06598 -13.89521 -13.62487 -13.34134 -13.20297 -12.85349 -12.73737 -12.53152 -12.45036 -12.06670 -11.89855 -11.78668 -11.61165 -11.41740 -11.14368 -10.98780 -10.85490 -10.74755 -10.56356 -10.42648 -10.31954 -10.23860 -10.05504 -9.84059 -9.67073 -9.33756 -9.31411 -9.03579 -8.81149 -8.50487 -7.55093 -6.15026 -4.27058 2.21109 2.53516 2.98370 3.19121 3.26061 3.28152 3.67324 4.05554 4.25686 4.27866 4.40409 4.54015 5.03190 5.05231 5.08055 5.10433 5.21724 5.26813 5.28931 5.33922 5.39395 5.58223 5.61780 5.67059 5.69381 5.73359 5.82212 5.85875 5.92318 5.99801 6.07006 6.09870 6.20822 6.32439 6.56817 6.59698 6.65827 6.78409 6.85689 6.87358 6.91215 7.07386 7.25479 7.32440 7.52192 7.56658 7.81743 7.91623 8.04473 8.20668 8.69173 9.38368 9.63341 10.86265 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.016405 B = 0.004394 C = 0.003943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.389542 B = 6371.125826 C = 7098.950864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.473 5.473 3 C 0.314 3.686 4 N -0.441 5.441 5 C 0.047 3.953 6 C -0.092 4.092 7 H 0.084 0.916 8 C -0.076 4.076 9 C -0.165 4.165 10 C -0.144 4.144 11 C -0.095 4.095 12 C -0.100 4.100 13 H 0.099 0.901 14 C 0.047 3.953 15 N -0.332 5.332 16 N -0.312 5.312 17 C 0.245 3.755 18 C 0.145 3.855 19 C -0.128 4.128 20 C -0.116 4.116 21 C -0.515 4.515 22 H 0.053 0.947 23 C 0.074 3.926 24 N -0.877 5.877 25 Si 0.894 3.106 26 H -0.277 1.277 27 H -0.284 1.284 28 H -0.277 1.277 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.114 0.886 32 H 0.060 0.940 33 H 0.086 0.914 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.104 0.896 37 H 0.100 0.900 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.098 0.902 42 H 0.030 0.970 43 H 0.012 0.988 44 H 0.092 0.908 45 H 0.088 0.912 46 H 0.034 0.966 47 H 0.018 0.982 48 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.960 17.053 -2.153 17.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.166 5.166 3 C -0.043 4.043 4 N -0.165 5.165 5 C -0.080 4.080 6 C -0.111 4.111 7 H 0.102 0.898 8 C -0.113 4.113 9 C -0.183 4.183 10 C -0.162 4.162 11 C -0.132 4.132 12 C -0.119 4.119 13 H 0.117 0.883 14 C -0.081 4.081 15 N -0.177 5.177 16 N -0.150 5.150 17 C -0.022 4.022 18 C 0.142 3.858 19 C -0.186 4.186 20 C -0.174 4.174 21 C -0.554 4.554 22 H 0.072 0.928 23 C -0.129 4.129 24 N -0.514 5.514 25 Si 0.721 3.279 26 H -0.202 1.202 27 H -0.210 1.210 28 H -0.203 1.203 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.132 0.868 32 H 0.078 0.922 33 H 0.104 0.896 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.122 0.878 37 H 0.118 0.882 38 H 0.093 0.907 39 H 0.098 0.902 40 H 0.101 0.899 41 H 0.117 0.883 42 H 0.049 0.951 43 H 0.031 0.969 44 H 0.111 0.889 45 H 0.106 0.894 46 H 0.053 0.947 47 H 0.037 0.963 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.785 16.921 -1.654 17.020 hybrid contribution -1.712 -0.269 -1.520 2.305 sum -2.497 16.652 -3.174 17.135 Atomic orbital electron populations 1.22218 0.76132 1.05350 1.03140 1.45915 1.08456 1.05622 1.56594 1.22539 0.87691 0.87240 1.06827 1.60698 1.19440 0.97628 1.38716 1.23165 0.97944 0.96273 0.90592 1.21372 0.95998 0.96175 0.97517 0.89753 1.19576 0.99087 1.00577 0.92049 1.21808 0.96283 1.01183 0.99012 1.21576 0.97104 0.99522 0.98026 1.20226 0.99923 1.00925 0.92083 1.22630 0.95181 0.99120 0.94977 0.88313 1.23422 0.92996 0.94246 0.97402 1.74271 1.15604 1.04704 1.23092 1.73952 1.18233 1.01400 1.21384 1.26028 0.85190 0.92737 0.98288 1.16903 0.94341 0.79056 0.95502 1.21859 0.97499 1.04487 0.94793 1.21605 0.95239 1.02401 0.98174 1.20810 1.31308 0.95943 1.07292 0.92834 1.24832 0.95945 0.95820 0.96279 1.69803 1.44124 1.02135 1.35360 0.86625 0.80548 0.77442 0.83239 1.20226 1.20990 1.20263 0.91239 0.90965 0.86811 0.92166 0.89559 0.90911 0.90635 0.87825 0.88166 0.90733 0.90169 0.89907 0.88346 0.95093 0.96885 0.88917 0.89381 0.94718 0.96253 0.92517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.24 9.64 59.84 0.58 1.82 16 2 N -0.47 -9.56 3.21 -121.46 -0.39 -9.95 16 3 C 0.31 6.09 6.41 -318.86 -2.04 4.04 16 4 N -0.44 -6.74 5.23 -170.05 -0.89 -7.63 16 5 C 0.05 0.61 4.37 -2.51 -0.01 0.60 16 6 C -0.09 -0.93 2.75 -90.82 -0.25 -1.18 16 7 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 8 C -0.08 -0.68 5.55 -29.81 -0.17 -0.85 16 9 C -0.16 -1.70 9.76 -36.05 -0.35 -2.06 16 10 C -0.14 -1.68 9.54 -36.79 -0.35 -2.03 16 11 C -0.09 -1.18 4.54 -29.06 -0.13 -1.31 16 12 C -0.10 -1.08 3.97 -88.18 -0.35 -1.43 16 13 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 14 C 0.05 0.62 5.96 -1.73 -0.01 0.61 16 15 N -0.33 -7.30 10.28 30.32 0.31 -6.99 16 16 N -0.31 -7.59 11.50 32.99 0.38 -7.21 16 17 C 0.25 5.73 6.28 -154.02 -0.97 4.76 16 18 C 0.14 3.49 0.52 -156.81 -0.08 3.41 16 19 C -0.13 -2.92 7.99 37.16 0.30 -2.62 16 20 C -0.12 -2.86 7.75 37.16 0.29 -2.57 16 21 C -0.51 -12.93 6.37 -34.44 -0.22 -13.15 16 22 H 0.05 1.37 7.33 -52.48 -0.38 0.98 16 23 C 0.07 1.86 5.15 -17.82 -0.09 1.77 16 24 N -0.88 -22.46 9.43 55.43 0.52 -21.94 16 25 Si 0.89 19.77 29.54 -169.99 -5.02 14.75 16 26 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 27 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 28 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 29 H 0.07 1.06 8.13 -51.93 -0.42 0.63 16 30 H 0.07 1.00 5.49 -51.93 -0.29 0.71 16 31 H 0.11 2.07 5.71 -51.93 -0.30 1.78 16 32 H 0.06 0.93 6.84 -51.93 -0.36 0.57 16 33 H 0.09 1.01 6.74 -51.93 -0.35 0.66 16 34 H 0.07 0.61 8.11 -51.93 -0.42 0.19 16 35 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.10 0.95 8.06 -52.49 -0.42 0.53 16 37 H 0.10 1.11 8.06 -52.48 -0.42 0.69 16 38 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.08 1.29 6.07 -51.93 -0.32 0.98 16 40 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.10 1.53 5.93 -51.93 -0.31 1.22 16 42 H 0.03 0.65 6.67 -51.93 -0.35 0.31 16 43 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 44 H 0.09 2.25 6.27 -51.93 -0.33 1.93 16 45 H 0.09 2.26 6.07 -51.93 -0.32 1.94 16 46 H 0.03 0.87 8.14 -51.93 -0.42 0.44 16 47 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.26 6.54 8.31 -40.82 -0.34 6.20 16 LS Contribution 356.00 15.07 5.36 5.36 Total: -1.00 -28.48 356.00 -11.07 -39.55 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -7.49 Total: 4.23 kcal Atomic # 6 Polarization: -6.31 SS G_CDS: -3.86 Total: -10.17 kcal Atomic # 7 Polarization: -53.65 SS G_CDS: -0.07 Total: -53.72 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.75 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -28.48 -11.07 -39.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339866191.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.344 kcal (2) G-P(sol) polarization free energy of solvation -28.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds