Wall clock time and date at job start Tue Mar 31 2020 11:26:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46496 * 1
3 3 C 1.36456 * 127.13885 * 2 1
4 4 N 1.38589 * 126.47148 * 359.97438 * 3 2 1
5 5 C 1.48569 * 110.99772 * 300.88390 * 4 3 2
6 6 C 1.53747 * 103.24925 * 213.42446 * 5 4 3
7 7 H 1.08990 * 109.14786 * 286.58481 * 6 5 4
8 8 C 1.50167 * 113.94842 * 164.21514 * 6 5 4
9 9 C 1.49623 * 113.16821 * 284.00029 * 8 6 5
10 10 C 1.29199 * 123.41204 * 347.00256 * 9 8 6
11 11 C 1.48045 * 124.60854 * 1.26456 * 10 9 8
12 12 C 1.53155 * 113.43092 * 343.26726 * 11 10 9
13 13 H 1.08997 * 113.65314 * 273.63968 * 12 11 10
14 14 C 1.47909 * 111.00082 * 180.29289 * 4 3 2
15 15 N 1.31214 * 107.05491 * 180.25804 * 3 2 1
16 16 N 1.28526 * 109.85868 * 359.73859 * 15 3 2
17 17 C 1.30296 * 110.05787 * 359.97438 * 16 15 3
18 18 C 1.50693 * 126.34896 * 180.02562 * 17 16 15
19 19 C 1.53003 * 109.47146 * 118.78544 * 18 17 16
20 20 C 1.53006 * 109.47141 * 358.78471 * 18 17 16
21 21 C 1.50700 * 109.47237 * 238.78593 * 18 17 16
22 22 H 1.08005 * 119.99927 * 359.97438 * 21 18 17
23 23 C 1.37875 * 120.00056 * 180.02562 * 21 18 17
24 24 N 1.31512 * 120.00212 * 359.97438 * 23 21 18
25 25 Si 1.86803 * 119.99979 * 180.02562 * 23 21 18
26 26 H 1.48501 * 109.47141 * 59.99399 * 25 23 21
27 27 H 1.48492 * 109.47138 * 179.97438 * 25 23 21
28 28 H 1.48510 * 109.46751 * 299.99666 * 25 23 21
29 29 H 1.09003 * 109.47541 * 272.12559 * 1 2 3
30 30 H 1.09002 * 109.47089 * 32.12564 * 1 2 3
31 31 H 1.09004 * 109.47356 * 152.12822 * 1 2 3
32 32 H 1.08998 * 110.66622 * 331.86814 * 5 4 3
33 33 H 1.09005 * 110.66035 * 94.98787 * 5 4 3
34 34 H 1.08999 * 108.74302 * 44.94833 * 8 6 5
35 35 H 1.09001 * 108.74666 * 163.04560 * 8 6 5
36 36 H 1.08001 * 118.29282 * 167.03516 * 9 8 6
37 37 H 1.08007 * 117.68441 * 181.89696 * 10 9 8
38 38 H 1.09005 * 109.25375 * 221.69237 * 11 10 9
39 39 H 1.08999 * 107.74253 * 103.77727 * 11 10 9
40 40 H 1.09004 * 110.06194 * 238.84887 * 14 4 3
41 41 H 1.09002 * 110.06001 * 0.34566 * 14 4 3
42 42 H 1.08997 * 109.47112 * 66.51509 * 19 18 17
43 43 H 1.08999 * 109.46990 * 306.51019 * 19 18 17
44 44 H 1.08997 * 109.47130 * 186.51607 * 19 18 17
45 45 H 1.09003 * 109.46785 * 179.97438 * 20 18 17
46 46 H 1.08995 * 109.47089 * 299.99997 * 20 18 17
47 47 H 1.08995 * 109.46694 * 60.00230 * 20 18 17
48 48 H 0.97001 * 120.00592 * 179.97438 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.2888 1.0878 0.0000
4 7 1.8978 2.4174 -0.0005
5 6 1.0649 2.7269 -1.1912
6 6 1.4375 4.1834 -1.5129
7 1 0.9846 4.8406 -0.7706
8 6 1.0238 4.6295 -2.8858
9 6 1.9069 4.0956 -3.9692
10 6 3.0499 3.5367 -3.7447
11 6 3.6313 3.3222 -2.4002
12 6 2.9694 4.1680 -1.3084
13 1 3.3983 5.1650 -1.2073
14 6 3.0729 3.3155 -0.0074
15 7 3.5212 0.6372 -0.0056
16 7 3.5161 -0.6480 -0.0036
17 6 2.2905 -1.0901 0.0039
18 6 1.8621 -2.5348 0.0092
19 6 1.0581 -2.8238 1.2784
20 6 3.0997 -3.4339 -0.0264
21 6 1.0067 -2.8096 -1.2008
22 1 0.7942 -2.0170 -1.9031
23 6 0.4946 -4.0724 -1.4107
24 7 0.7530 -5.0373 -0.5553
25 14 -0.5651 -4.4131 -2.9108
26 1 0.2160 -4.1333 -4.1425
27 1 -0.9873 -5.8367 -2.9057
28 1 -1.7659 -3.5399 -2.8772
29 1 -0.3634 0.0381 1.0270
30 1 -0.3633 0.8703 -0.5465
31 1 -0.3634 -0.9085 -0.4804
32 1 1.3236 2.0711 -2.0226
33 1 0.0049 2.6451 -0.9509
34 1 0.0027 4.2954 -3.0697
35 1 1.0451 5.7187 -2.9215
36 1 1.5716 4.1824 -4.9922
37 1 3.6260 3.2120 -4.5986
38 1 4.6960 3.5544 -2.4277
39 1 3.5101 2.2682 -2.1502
40 1 3.0523 3.9649 0.8679
41 1 3.9917 2.7291 -0.0167
42 1 0.1201 -2.2694 1.2484
43 1 1.6341 -2.5165 2.1512
44 1 0.8473 -3.8915 1.3398
45 1 2.7897 -4.4789 -0.0222
46 1 3.6724 -3.2280 -0.9306
47 1 3.7182 -3.2352 0.8487
48 1 0.3924 -5.9257 -0.7027
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001339866191.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:26:31
Heat of formation + Delta-G solvation = 93.551116 kcal
Electronic energy + Delta-G solvation = -28235.496838 eV
Core-core repulsion = 24712.645212 eV
Total energy + Delta-G solvation = -3522.851626 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 316.196 amu
Computer time = 0.79 seconds
Orbital eigenvalues (eV)
-43.89313 -41.39457 -37.70827 -36.97808 -35.56255 -33.46774 -32.72215 -32.14067
-29.51241 -28.59679 -28.19232 -27.59590 -27.28651 -25.30343 -23.81052 -22.88182
-22.14574 -21.46105 -20.55870 -18.53053 -18.25178 -17.95479 -17.29387 -17.19465
-16.86366 -16.44196 -16.09234 -15.36851 -14.95848 -14.85854 -14.75118 -14.37175
-14.25201 -14.10191 -13.71154 -13.62352 -13.42064 -13.30826 -13.11641 -12.93662
-12.84181 -12.77005 -12.69581 -12.56928 -12.35123 -12.23266 -11.84671 -11.78216
-11.69068 -11.38875 -11.20784 -11.11208 -11.04255 -10.91094 -10.46513 -10.43618
-9.88001 -9.09587 -8.07527 -6.25190 0.98746 1.37054 1.42868 1.46677
1.50223 1.52104 1.98351 2.43064 2.78474 3.16208 3.35892 3.42432
3.64063 3.81158 3.92692 4.12831 4.19126 4.26385 4.29053 4.32742
4.36396 4.38692 4.40545 4.53200 4.66402 4.69822 4.73450 4.76498
4.81687 4.87045 4.95056 4.96767 5.04035 5.06380 5.11881 5.14021
5.20723 5.26909 5.34611 5.35906 5.51295 5.54494 5.59819 5.73092
5.75779 5.95319 6.04265 6.06290 6.26030 6.34807 6.72784 7.42034
7.96018 8.92795
Molecular weight = 316.20amu
Principal moments of inertia in cm(-1)
A = 0.016405 B = 0.004394 C = 0.003943
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1706.389542 B = 6371.125826 C = 7098.950864
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.072 3.928
2 N -0.475 5.475
3 C 0.334 3.666
4 N -0.437 5.437
5 C 0.045 3.955
6 C -0.082 4.082
7 H 0.110 0.890
8 C -0.077 4.077
9 C -0.151 4.151
10 C -0.174 4.174
11 C -0.089 4.089
12 C -0.088 4.088
13 H 0.129 0.871
14 C 0.041 3.959
15 N -0.361 5.361
16 N -0.345 5.345
17 C 0.224 3.776
18 C 0.142 3.858
19 C -0.114 4.114
20 C -0.104 4.104
21 C -0.522 4.522
22 H 0.044 0.956
23 C 0.039 3.961
24 N -0.895 5.895
25 Si 0.948 3.052
26 H -0.285 1.285
27 H -0.281 1.281
28 H -0.265 1.265
29 H 0.086 0.914
30 H 0.102 0.898
31 H 0.097 0.903
32 H 0.032 0.968
33 H 0.106 0.894
34 H 0.086 0.914
35 H 0.104 0.896
36 H 0.117 0.883
37 H 0.095 0.905
38 H 0.072 0.928
39 H 0.036 0.964
40 H 0.105 0.895
41 H 0.070 0.930
42 H 0.042 0.958
43 H 0.014 0.986
44 H 0.076 0.924
45 H 0.076 0.924
46 H 0.016 0.984
47 H 0.019 0.981
48 H 0.266 0.734
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.300 20.096 -2.558 20.710
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.070 4.070
2 N -0.168 5.168
3 C -0.023 4.023
4 N -0.161 5.161
5 C -0.081 4.081
6 C -0.100 4.100
7 H 0.128 0.872
8 C -0.114 4.114
9 C -0.169 4.169
10 C -0.192 4.192
11 C -0.126 4.126
12 C -0.107 4.107
13 H 0.147 0.853
14 C -0.086 4.086
15 N -0.205 5.205
16 N -0.183 5.183
17 C -0.045 4.045
18 C 0.139 3.861
19 C -0.173 4.173
20 C -0.163 4.163
21 C -0.560 4.560
22 H 0.062 0.938
23 C -0.163 4.163
24 N -0.532 5.532
25 Si 0.774 3.226
26 H -0.211 1.211
27 H -0.207 1.207
28 H -0.189 1.189
29 H 0.105 0.895
30 H 0.120 0.880
31 H 0.116 0.884
32 H 0.050 0.950
33 H 0.124 0.876
34 H 0.105 0.895
35 H 0.122 0.878
36 H 0.135 0.865
37 H 0.113 0.887
38 H 0.091 0.909
39 H 0.054 0.946
40 H 0.124 0.876
41 H 0.088 0.912
42 H 0.061 0.939
43 H 0.033 0.967
44 H 0.095 0.905
45 H 0.095 0.905
46 H 0.035 0.965
47 H 0.038 0.962
48 H 0.075 0.925
Dipole moment (debyes) X Y Z Total
from point charges -3.138 19.981 -2.057 20.331
hybrid contribution -0.967 -1.124 -1.408 2.044
sum -4.105 18.858 -3.464 19.608
Atomic orbital electron populations
1.22408 0.74122 1.05927 1.04562 1.46034 1.09609 1.04958 1.56206
1.22968 0.86856 0.88686 1.03818 1.60918 1.20222 0.95401 1.39593
1.23292 0.98357 0.97851 0.88645 1.21408 0.95121 0.94330 0.99184
0.87167 1.19678 0.99155 1.02158 0.90391 1.22121 0.95369 0.99021
1.00393 1.21554 0.98375 1.01852 0.97389 1.20120 1.00428 0.98689
0.93403 1.22670 0.96049 0.99529 0.92444 0.85294 1.23545 0.91095
0.94075 0.99874 1.74216 1.17309 1.03782 1.25154 1.73846 1.19338
1.02830 1.22265 1.25755 0.85681 0.93147 0.99915 1.16834 0.93770
0.79683 0.95816 1.21686 0.97852 1.03471 0.94283 1.21462 0.95604
1.01928 0.97263 1.20861 1.31668 0.95966 1.07542 0.93752 1.25414
0.96877 0.95574 0.98403 1.69898 1.44593 1.02295 1.36426 0.85767
0.79395 0.77476 0.79915 1.21146 1.20666 1.18950 0.89517 0.87980
0.88440 0.94992 0.87633 0.89525 0.87818 0.86524 0.88735 0.90936
0.94578 0.87649 0.91181 0.93896 0.96688 0.90496 0.90546 0.96459
0.96164 0.92459
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.07 2.28 9.64 127.77 1.23 3.51 16
2 N -0.48 -19.18 3.21 -538.18 -1.73 -20.90 16
3 C 0.33 12.96 6.41 260.11 1.67 14.63 16
4 N -0.44 -12.63 5.23 -691.92 -3.62 -16.25 16
5 C 0.04 1.05 4.37 86.23 0.38 1.42 16
6 C -0.08 -1.33 2.75 -10.93 -0.03 -1.36 16
7 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16
8 C -0.08 -1.03 5.55 28.60 0.16 -0.87 16
9 C -0.15 -2.71 9.76 27.13 0.26 -2.45 16
10 C -0.17 -3.90 9.54 26.66 0.25 -3.65 16
11 C -0.09 -2.21 4.54 29.09 0.13 -2.08 16
12 C -0.09 -1.67 3.97 -9.21 -0.04 -1.71 16
13 H 0.13 1.75 8.14 -2.39 -0.02 1.73 16
14 C 0.04 1.02 5.96 87.11 0.52 1.54 16
15 N -0.36 -16.38 10.28 -58.00 -0.60 -16.98 16
16 N -0.35 -17.47 11.50 -49.54 -0.57 -18.04 16
17 C 0.22 10.75 6.28 137.64 0.86 11.61 16
18 C 0.14 7.00 0.52 -53.67 -0.03 6.97 16
19 C -0.11 -5.27 7.99 71.98 0.58 -4.69 16
20 C -0.10 -5.34 7.75 71.98 0.56 -4.79 16
21 C -0.52 -26.58 6.37 25.60 0.16 -26.42 16
22 H 0.04 2.30 7.33 -2.91 -0.02 2.28 16
23 C 0.04 1.95 5.15 84.65 0.44 2.39 16
24 N -0.89 -46.26 9.43 21.45 0.20 -46.06 16
25 Si 0.95 40.40 29.54 68.60 2.03 42.43 16
26 H -0.29 -12.50 7.11 99.48 0.71 -11.79 16
27 H -0.28 -11.78 7.11 99.48 0.71 -11.08 16
28 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16
29 H 0.09 2.45 8.13 -2.39 -0.02 2.43 16
30 H 0.10 2.57 5.49 -2.39 -0.01 2.56 16
31 H 0.10 3.48 5.71 -2.38 -0.01 3.46 16
32 H 0.03 0.95 6.84 -2.39 -0.02 0.93 16
33 H 0.11 2.05 6.74 -2.38 -0.02 2.04 16
34 H 0.09 1.02 8.11 -2.39 -0.02 1.00 16
35 H 0.10 0.94 8.14 -2.39 -0.02 0.93 16
36 H 0.12 1.79 8.06 -2.91 -0.02 1.76 16
37 H 0.09 2.14 8.06 -2.91 -0.02 2.11 16
38 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16
39 H 0.04 1.22 6.07 -2.39 -0.01 1.20 16
40 H 0.11 2.16 8.14 -2.38 -0.02 2.14 16
41 H 0.07 2.21 5.93 -2.39 -0.01 2.19 16
42 H 0.04 1.81 6.67 -2.39 -0.02 1.80 16
43 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16
44 H 0.08 3.78 6.27 -2.39 -0.01 3.77 16
45 H 0.08 4.06 6.07 -2.39 -0.01 4.04 16
46 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16
47 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16
48 H 0.27 13.18 8.31 -92.71 -0.77 12.40 16
Total: -1.00 -64.14 356.00 3.78 -60.37
By element:
Atomic # 1 Polarization: 20.42 SS G_CDS: 0.95 Total: 21.38 kcal
Atomic # 6 Polarization: -13.05 SS G_CDS: 7.11 Total: -5.94 kcal
Atomic # 7 Polarization: -111.92 SS G_CDS: -6.31 Total: -118.23 kcal
Atomic # 14 Polarization: 40.40 SS G_CDS: 2.03 Total: 42.43 kcal
Total: -64.14 3.78 -60.37 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001339866191.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 153.917 kcal
(2) G-P(sol) polarization free energy of solvation -64.143 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.773 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.778 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.366 kcal
(6) G-S(sol) free energy of system = (1) + (5) 93.551 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.79 seconds