Wall clock time and date at job start Tue Mar 31 2020 11:26:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36456 * 127.13885 * 2 1 4 4 N 1.38589 * 126.47148 * 359.97438 * 3 2 1 5 5 C 1.48569 * 110.99772 * 300.88390 * 4 3 2 6 6 C 1.53747 * 103.24925 * 213.42446 * 5 4 3 7 7 H 1.08990 * 109.14786 * 286.58481 * 6 5 4 8 8 C 1.50167 * 113.94842 * 164.21514 * 6 5 4 9 9 C 1.49623 * 113.16821 * 284.00029 * 8 6 5 10 10 C 1.29199 * 123.41204 * 347.00256 * 9 8 6 11 11 C 1.48045 * 124.60854 * 1.26456 * 10 9 8 12 12 C 1.53155 * 113.43092 * 343.26726 * 11 10 9 13 13 H 1.08997 * 113.65314 * 273.63968 * 12 11 10 14 14 C 1.47909 * 111.00082 * 180.29289 * 4 3 2 15 15 N 1.31214 * 107.05491 * 180.25804 * 3 2 1 16 16 N 1.28526 * 109.85868 * 359.73859 * 15 3 2 17 17 C 1.30296 * 110.05787 * 359.97438 * 16 15 3 18 18 C 1.50693 * 126.34896 * 180.02562 * 17 16 15 19 19 C 1.53003 * 109.47146 * 118.78544 * 18 17 16 20 20 C 1.53006 * 109.47141 * 358.78471 * 18 17 16 21 21 C 1.50700 * 109.47237 * 238.78593 * 18 17 16 22 22 H 1.08005 * 119.99927 * 359.97438 * 21 18 17 23 23 C 1.37875 * 120.00056 * 180.02562 * 21 18 17 24 24 N 1.31512 * 120.00212 * 359.97438 * 23 21 18 25 25 Si 1.86803 * 119.99979 * 180.02562 * 23 21 18 26 26 H 1.48501 * 109.47141 * 59.99399 * 25 23 21 27 27 H 1.48492 * 109.47138 * 179.97438 * 25 23 21 28 28 H 1.48510 * 109.46751 * 299.99666 * 25 23 21 29 29 H 1.09003 * 109.47541 * 272.12559 * 1 2 3 30 30 H 1.09002 * 109.47089 * 32.12564 * 1 2 3 31 31 H 1.09004 * 109.47356 * 152.12822 * 1 2 3 32 32 H 1.08998 * 110.66622 * 331.86814 * 5 4 3 33 33 H 1.09005 * 110.66035 * 94.98787 * 5 4 3 34 34 H 1.08999 * 108.74302 * 44.94833 * 8 6 5 35 35 H 1.09001 * 108.74666 * 163.04560 * 8 6 5 36 36 H 1.08001 * 118.29282 * 167.03516 * 9 8 6 37 37 H 1.08007 * 117.68441 * 181.89696 * 10 9 8 38 38 H 1.09005 * 109.25375 * 221.69237 * 11 10 9 39 39 H 1.08999 * 107.74253 * 103.77727 * 11 10 9 40 40 H 1.09004 * 110.06194 * 238.84887 * 14 4 3 41 41 H 1.09002 * 110.06001 * 0.34566 * 14 4 3 42 42 H 1.08997 * 109.47112 * 66.51509 * 19 18 17 43 43 H 1.08999 * 109.46990 * 306.51019 * 19 18 17 44 44 H 1.08997 * 109.47130 * 186.51607 * 19 18 17 45 45 H 1.09003 * 109.46785 * 179.97438 * 20 18 17 46 46 H 1.08995 * 109.47089 * 299.99997 * 20 18 17 47 47 H 1.08995 * 109.46694 * 60.00230 * 20 18 17 48 48 H 0.97001 * 120.00592 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2888 1.0878 0.0000 4 7 1.8978 2.4174 -0.0005 5 6 1.0649 2.7269 -1.1912 6 6 1.4375 4.1834 -1.5129 7 1 0.9846 4.8406 -0.7706 8 6 1.0238 4.6295 -2.8858 9 6 1.9069 4.0956 -3.9692 10 6 3.0499 3.5367 -3.7447 11 6 3.6313 3.3222 -2.4002 12 6 2.9694 4.1680 -1.3084 13 1 3.3983 5.1650 -1.2073 14 6 3.0729 3.3155 -0.0074 15 7 3.5212 0.6372 -0.0056 16 7 3.5161 -0.6480 -0.0036 17 6 2.2905 -1.0901 0.0039 18 6 1.8621 -2.5348 0.0092 19 6 1.0581 -2.8238 1.2784 20 6 3.0997 -3.4339 -0.0264 21 6 1.0067 -2.8096 -1.2008 22 1 0.7942 -2.0170 -1.9031 23 6 0.4946 -4.0724 -1.4107 24 7 0.7530 -5.0373 -0.5553 25 14 -0.5651 -4.4131 -2.9108 26 1 0.2160 -4.1333 -4.1425 27 1 -0.9873 -5.8367 -2.9057 28 1 -1.7659 -3.5399 -2.8772 29 1 -0.3634 0.0381 1.0270 30 1 -0.3633 0.8703 -0.5465 31 1 -0.3634 -0.9085 -0.4804 32 1 1.3236 2.0711 -2.0226 33 1 0.0049 2.6451 -0.9509 34 1 0.0027 4.2954 -3.0697 35 1 1.0451 5.7187 -2.9215 36 1 1.5716 4.1824 -4.9922 37 1 3.6260 3.2120 -4.5986 38 1 4.6960 3.5544 -2.4277 39 1 3.5101 2.2682 -2.1502 40 1 3.0523 3.9649 0.8679 41 1 3.9917 2.7291 -0.0167 42 1 0.1201 -2.2694 1.2484 43 1 1.6341 -2.5165 2.1512 44 1 0.8473 -3.8915 1.3398 45 1 2.7897 -4.4789 -0.0222 46 1 3.6724 -3.2280 -0.9306 47 1 3.7182 -3.2352 0.8487 48 1 0.3924 -5.9257 -0.7027 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339866191.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:31 Heat of formation + Delta-G solvation = 93.551116 kcal Electronic energy + Delta-G solvation = -28235.496838 eV Core-core repulsion = 24712.645212 eV Total energy + Delta-G solvation = -3522.851626 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.89313 -41.39457 -37.70827 -36.97808 -35.56255 -33.46774 -32.72215 -32.14067 -29.51241 -28.59679 -28.19232 -27.59590 -27.28651 -25.30343 -23.81052 -22.88182 -22.14574 -21.46105 -20.55870 -18.53053 -18.25178 -17.95479 -17.29387 -17.19465 -16.86366 -16.44196 -16.09234 -15.36851 -14.95848 -14.85854 -14.75118 -14.37175 -14.25201 -14.10191 -13.71154 -13.62352 -13.42064 -13.30826 -13.11641 -12.93662 -12.84181 -12.77005 -12.69581 -12.56928 -12.35123 -12.23266 -11.84671 -11.78216 -11.69068 -11.38875 -11.20784 -11.11208 -11.04255 -10.91094 -10.46513 -10.43618 -9.88001 -9.09587 -8.07527 -6.25190 0.98746 1.37054 1.42868 1.46677 1.50223 1.52104 1.98351 2.43064 2.78474 3.16208 3.35892 3.42432 3.64063 3.81158 3.92692 4.12831 4.19126 4.26385 4.29053 4.32742 4.36396 4.38692 4.40545 4.53200 4.66402 4.69822 4.73450 4.76498 4.81687 4.87045 4.95056 4.96767 5.04035 5.06380 5.11881 5.14021 5.20723 5.26909 5.34611 5.35906 5.51295 5.54494 5.59819 5.73092 5.75779 5.95319 6.04265 6.06290 6.26030 6.34807 6.72784 7.42034 7.96018 8.92795 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.016405 B = 0.004394 C = 0.003943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.389542 B = 6371.125826 C = 7098.950864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.475 5.475 3 C 0.334 3.666 4 N -0.437 5.437 5 C 0.045 3.955 6 C -0.082 4.082 7 H 0.110 0.890 8 C -0.077 4.077 9 C -0.151 4.151 10 C -0.174 4.174 11 C -0.089 4.089 12 C -0.088 4.088 13 H 0.129 0.871 14 C 0.041 3.959 15 N -0.361 5.361 16 N -0.345 5.345 17 C 0.224 3.776 18 C 0.142 3.858 19 C -0.114 4.114 20 C -0.104 4.104 21 C -0.522 4.522 22 H 0.044 0.956 23 C 0.039 3.961 24 N -0.895 5.895 25 Si 0.948 3.052 26 H -0.285 1.285 27 H -0.281 1.281 28 H -0.265 1.265 29 H 0.086 0.914 30 H 0.102 0.898 31 H 0.097 0.903 32 H 0.032 0.968 33 H 0.106 0.894 34 H 0.086 0.914 35 H 0.104 0.896 36 H 0.117 0.883 37 H 0.095 0.905 38 H 0.072 0.928 39 H 0.036 0.964 40 H 0.105 0.895 41 H 0.070 0.930 42 H 0.042 0.958 43 H 0.014 0.986 44 H 0.076 0.924 45 H 0.076 0.924 46 H 0.016 0.984 47 H 0.019 0.981 48 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.300 20.096 -2.558 20.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.168 5.168 3 C -0.023 4.023 4 N -0.161 5.161 5 C -0.081 4.081 6 C -0.100 4.100 7 H 0.128 0.872 8 C -0.114 4.114 9 C -0.169 4.169 10 C -0.192 4.192 11 C -0.126 4.126 12 C -0.107 4.107 13 H 0.147 0.853 14 C -0.086 4.086 15 N -0.205 5.205 16 N -0.183 5.183 17 C -0.045 4.045 18 C 0.139 3.861 19 C -0.173 4.173 20 C -0.163 4.163 21 C -0.560 4.560 22 H 0.062 0.938 23 C -0.163 4.163 24 N -0.532 5.532 25 Si 0.774 3.226 26 H -0.211 1.211 27 H -0.207 1.207 28 H -0.189 1.189 29 H 0.105 0.895 30 H 0.120 0.880 31 H 0.116 0.884 32 H 0.050 0.950 33 H 0.124 0.876 34 H 0.105 0.895 35 H 0.122 0.878 36 H 0.135 0.865 37 H 0.113 0.887 38 H 0.091 0.909 39 H 0.054 0.946 40 H 0.124 0.876 41 H 0.088 0.912 42 H 0.061 0.939 43 H 0.033 0.967 44 H 0.095 0.905 45 H 0.095 0.905 46 H 0.035 0.965 47 H 0.038 0.962 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.138 19.981 -2.057 20.331 hybrid contribution -0.967 -1.124 -1.408 2.044 sum -4.105 18.858 -3.464 19.608 Atomic orbital electron populations 1.22408 0.74122 1.05927 1.04562 1.46034 1.09609 1.04958 1.56206 1.22968 0.86856 0.88686 1.03818 1.60918 1.20222 0.95401 1.39593 1.23292 0.98357 0.97851 0.88645 1.21408 0.95121 0.94330 0.99184 0.87167 1.19678 0.99155 1.02158 0.90391 1.22121 0.95369 0.99021 1.00393 1.21554 0.98375 1.01852 0.97389 1.20120 1.00428 0.98689 0.93403 1.22670 0.96049 0.99529 0.92444 0.85294 1.23545 0.91095 0.94075 0.99874 1.74216 1.17309 1.03782 1.25154 1.73846 1.19338 1.02830 1.22265 1.25755 0.85681 0.93147 0.99915 1.16834 0.93770 0.79683 0.95816 1.21686 0.97852 1.03471 0.94283 1.21462 0.95604 1.01928 0.97263 1.20861 1.31668 0.95966 1.07542 0.93752 1.25414 0.96877 0.95574 0.98403 1.69898 1.44593 1.02295 1.36426 0.85767 0.79395 0.77476 0.79915 1.21146 1.20666 1.18950 0.89517 0.87980 0.88440 0.94992 0.87633 0.89525 0.87818 0.86524 0.88735 0.90936 0.94578 0.87649 0.91181 0.93896 0.96688 0.90496 0.90546 0.96459 0.96164 0.92459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.28 9.64 127.77 1.23 3.51 16 2 N -0.48 -19.18 3.21 -538.18 -1.73 -20.90 16 3 C 0.33 12.96 6.41 260.11 1.67 14.63 16 4 N -0.44 -12.63 5.23 -691.92 -3.62 -16.25 16 5 C 0.04 1.05 4.37 86.23 0.38 1.42 16 6 C -0.08 -1.33 2.75 -10.93 -0.03 -1.36 16 7 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 8 C -0.08 -1.03 5.55 28.60 0.16 -0.87 16 9 C -0.15 -2.71 9.76 27.13 0.26 -2.45 16 10 C -0.17 -3.90 9.54 26.66 0.25 -3.65 16 11 C -0.09 -2.21 4.54 29.09 0.13 -2.08 16 12 C -0.09 -1.67 3.97 -9.21 -0.04 -1.71 16 13 H 0.13 1.75 8.14 -2.39 -0.02 1.73 16 14 C 0.04 1.02 5.96 87.11 0.52 1.54 16 15 N -0.36 -16.38 10.28 -58.00 -0.60 -16.98 16 16 N -0.35 -17.47 11.50 -49.54 -0.57 -18.04 16 17 C 0.22 10.75 6.28 137.64 0.86 11.61 16 18 C 0.14 7.00 0.52 -53.67 -0.03 6.97 16 19 C -0.11 -5.27 7.99 71.98 0.58 -4.69 16 20 C -0.10 -5.34 7.75 71.98 0.56 -4.79 16 21 C -0.52 -26.58 6.37 25.60 0.16 -26.42 16 22 H 0.04 2.30 7.33 -2.91 -0.02 2.28 16 23 C 0.04 1.95 5.15 84.65 0.44 2.39 16 24 N -0.89 -46.26 9.43 21.45 0.20 -46.06 16 25 Si 0.95 40.40 29.54 68.60 2.03 42.43 16 26 H -0.29 -12.50 7.11 99.48 0.71 -11.79 16 27 H -0.28 -11.78 7.11 99.48 0.71 -11.08 16 28 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 29 H 0.09 2.45 8.13 -2.39 -0.02 2.43 16 30 H 0.10 2.57 5.49 -2.39 -0.01 2.56 16 31 H 0.10 3.48 5.71 -2.38 -0.01 3.46 16 32 H 0.03 0.95 6.84 -2.39 -0.02 0.93 16 33 H 0.11 2.05 6.74 -2.38 -0.02 2.04 16 34 H 0.09 1.02 8.11 -2.39 -0.02 1.00 16 35 H 0.10 0.94 8.14 -2.39 -0.02 0.93 16 36 H 0.12 1.79 8.06 -2.91 -0.02 1.76 16 37 H 0.09 2.14 8.06 -2.91 -0.02 2.11 16 38 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 39 H 0.04 1.22 6.07 -2.39 -0.01 1.20 16 40 H 0.11 2.16 8.14 -2.38 -0.02 2.14 16 41 H 0.07 2.21 5.93 -2.39 -0.01 2.19 16 42 H 0.04 1.81 6.67 -2.39 -0.02 1.80 16 43 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 44 H 0.08 3.78 6.27 -2.39 -0.01 3.77 16 45 H 0.08 4.06 6.07 -2.39 -0.01 4.04 16 46 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 47 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 48 H 0.27 13.18 8.31 -92.71 -0.77 12.40 16 Total: -1.00 -64.14 356.00 3.78 -60.37 By element: Atomic # 1 Polarization: 20.42 SS G_CDS: 0.95 Total: 21.38 kcal Atomic # 6 Polarization: -13.05 SS G_CDS: 7.11 Total: -5.94 kcal Atomic # 7 Polarization: -111.92 SS G_CDS: -6.31 Total: -118.23 kcal Atomic # 14 Polarization: 40.40 SS G_CDS: 2.03 Total: 42.43 kcal Total: -64.14 3.78 -60.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339866191.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.917 kcal (2) G-P(sol) polarization free energy of solvation -64.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds