Wall clock time and date at job start Tue Mar 31 2020 11:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.53002 * 109.46851 * 266.66339 * 3 2 1 5 5 C 1.52995 * 109.47597 * 300.00037 * 4 3 2 6 6 C 1.53005 * 109.46951 * 60.00664 * 4 3 2 7 7 C 1.50700 * 109.46894 * 180.02562 * 4 3 2 8 8 N 1.30299 * 126.34858 * 5.70763 * 7 4 3 9 9 N 1.28524 * 110.05338 * 179.81945 * 8 7 4 10 10 C 1.31217 * 109.86491 * 0.45558 * 9 8 7 11 11 N 1.38579 * 126.47729 * 179.69236 * 10 9 8 12 12 C 1.46842 * 110.99858 * 59.27643 * 11 10 9 13 13 C 1.53040 * 109.51964 * 174.16099 * 12 11 10 14 14 C 1.53113 * 109.28104 * 59.17829 * 13 12 11 15 15 C 1.50705 * 109.52364 * 182.43780 * 14 13 12 16 16 H 1.07996 * 119.99905 * 119.68749 * 15 14 13 17 17 C 1.37875 * 120.00010 * 299.68274 * 15 14 13 18 18 N 1.31513 * 119.99784 * 179.97438 * 17 15 14 19 19 Si 1.86803 * 120.00158 * 0.02562 * 17 15 14 20 20 H 1.48491 * 109.47129 * 89.99671 * 19 17 15 21 21 H 1.48497 * 109.47045 * 209.99877 * 19 17 15 22 22 H 1.48501 * 109.47008 * 329.99556 * 19 17 15 23 23 C 1.53113 * 109.16189 * 302.34535 * 14 13 12 24 24 C 1.46843 * 110.99983 * 295.06480 * 11 10 9 25 25 N 1.36461 * 107.04937 * 359.72768 * 10 9 8 26 26 C 1.46501 * 127.13679 * 180.02562 * 25 10 9 27 27 H 4.44644 * 5.63328 * 179.97438 * 4 1 2 28 28 H 1.09001 * 109.46890 * 146.66765 * 3 2 1 29 29 H 1.08995 * 109.47545 * 26.66395 * 3 2 1 30 30 H 1.08993 * 109.47376 * 174.93069 * 5 4 3 31 31 H 1.09006 * 109.46578 * 54.93608 * 5 4 3 32 32 H 1.08999 * 109.47337 * 294.93874 * 5 4 3 33 33 H 1.09000 * 109.46662 * 299.99405 * 6 4 3 34 34 H 1.08996 * 109.46969 * 59.99946 * 6 4 3 35 35 H 1.08995 * 109.46652 * 179.97438 * 6 4 3 36 36 H 1.09001 * 109.46315 * 294.17352 * 12 11 10 37 37 H 1.09002 * 109.46580 * 54.14491 * 12 11 10 38 38 H 1.09001 * 109.50474 * 299.23054 * 13 12 11 39 39 H 1.09011 * 109.50023 * 179.12176 * 13 12 11 40 40 H 1.09006 * 109.51938 * 62.25103 * 14 13 12 41 41 H 0.97003 * 119.99822 * 180.02562 * 18 17 15 42 42 H 1.09004 * 109.50021 * 297.71359 * 23 14 13 43 43 H 1.08998 * 109.50605 * 177.59683 * 23 14 13 44 44 H 1.09000 * 109.46523 * 305.85410 * 24 11 10 45 45 H 1.08994 * 109.46539 * 65.82276 * 24 11 10 46 46 H 1.09002 * 109.46876 * 274.95282 * 26 25 10 47 47 H 1.09006 * 109.46792 * 34.95130 * 26 25 10 48 48 H 1.08997 * 109.46856 * 154.95232 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 6 3.1560 0.0848 1.4401 5 6 2.6454 1.3736 2.0875 6 6 2.6466 -1.1207 2.2328 7 6 4.6630 0.0862 1.4401 8 7 5.4352 0.1304 0.3915 9 7 6.6688 0.1203 0.7519 10 6 6.7506 0.0588 2.0601 11 7 7.9141 0.0238 2.8121 12 6 8.7360 1.2154 2.5656 13 6 9.9359 1.2145 3.5155 14 6 10.7615 -0.0544 3.2860 15 6 11.9112 -0.0902 4.2597 16 1 11.9981 -0.9054 4.9627 17 6 12.8520 0.9176 4.2529 18 7 13.8550 0.8865 5.1030 19 14 12.7013 2.3279 3.0373 20 1 11.8983 3.4201 3.6433 21 1 14.0547 2.8373 2.6998 22 1 12.0311 1.8474 1.8023 23 6 9.8697 -1.2802 3.5018 24 6 8.6718 -1.2069 2.5523 25 7 5.4735 0.0351 2.5402 26 6 5.0571 -0.0307 3.9432 27 1 -1.0499 0.0002 0.0000 28 1 3.0090 0.8595 -0.5647 29 1 3.0099 -0.9175 -0.4611 30 1 2.9327 1.3907 3.1387 31 1 1.5591 1.4150 2.0070 32 1 3.0805 2.2333 1.5779 33 1 1.5566 -1.1211 2.2327 34 1 3.0104 -2.0388 1.7715 35 1 3.0102 -1.0609 3.2585 36 1 9.0892 1.2060 1.5344 37 1 8.1382 2.1107 2.7364 38 1 9.5836 1.2379 4.5468 39 1 10.5542 2.0911 3.3217 40 1 11.1464 -0.0590 2.2662 41 1 14.5167 1.5958 5.0985 42 1 9.5164 -1.2960 4.5329 43 1 10.4407 -2.1860 3.2982 44 1 8.0273 -2.0711 2.7135 45 1 9.0252 -1.2050 1.5212 46 1 5.0399 -1.0709 4.2687 47 1 5.7608 0.5308 4.5578 48 1 4.0607 0.3989 4.0470 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340124797.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:20 Heat of formation + Delta-G solvation = 136.478252 kcal Electronic energy + Delta-G solvation = -27075.479767 eV Core-core repulsion = 23554.489601 eV Total energy + Delta-G solvation = -3520.990166 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.06765 -38.78930 -37.86375 -35.05605 -34.12217 -32.81327 -31.66851 -30.41695 -29.09889 -28.06627 -27.78634 -27.56149 -25.87654 -22.99435 -22.81334 -22.35694 -20.79709 -20.10580 -18.83929 -18.02121 -17.23627 -16.76740 -16.37924 -16.12887 -15.71023 -14.94204 -14.75239 -14.50543 -14.34764 -13.74966 -13.62152 -13.48403 -13.19187 -13.11873 -13.07538 -12.87144 -12.38760 -12.31353 -12.26900 -11.96396 -11.87451 -11.60547 -11.58554 -11.42763 -10.97529 -10.68257 -10.64566 -10.37689 -10.32388 -10.24007 -10.10857 -9.99344 -9.71514 -9.21320 -9.02669 -8.91903 -8.55549 -8.49961 -6.08249 -4.07266 1.69220 2.14964 2.55272 2.57236 2.82885 3.25478 3.38452 3.39596 3.76791 3.90700 4.11266 4.40085 4.42465 4.46063 4.47253 4.69788 4.95254 5.12133 5.15313 5.17262 5.21998 5.24165 5.31381 5.43140 5.45533 5.49514 5.49905 5.62968 5.64938 5.72803 5.77773 5.82216 5.83648 5.86036 5.94776 5.98379 6.03371 6.23984 6.33860 6.51939 6.62824 6.70477 6.87308 7.04915 7.23562 7.32314 7.41542 7.55456 7.75435 8.51094 8.75203 8.95848 9.54450 11.05001 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.032291 B = 0.002874 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.896878 B = 9741.862063 C = 9940.327513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.172 4.172 3 C 0.006 3.994 4 C 0.037 3.963 5 C -0.147 4.147 6 C -0.150 4.150 7 C 0.178 3.822 8 N -0.285 5.285 9 N -0.312 5.312 10 C 0.360 3.640 11 N -0.464 5.464 12 C 0.069 3.931 13 C -0.116 4.116 14 C 0.012 3.988 15 C -0.510 4.510 16 H 0.074 0.926 17 C 0.069 3.931 18 N -0.901 5.901 19 Si 0.883 3.117 20 H -0.279 1.279 21 H -0.297 1.297 22 H -0.264 1.264 23 C -0.094 4.094 24 C 0.069 3.931 25 N -0.463 5.463 26 C 0.074 3.926 27 H 0.216 0.784 28 H 0.099 0.901 29 H 0.096 0.904 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.048 0.952 37 H 0.062 0.938 38 H 0.071 0.929 39 H 0.055 0.945 40 H 0.027 0.973 41 H 0.263 0.737 42 H 0.065 0.935 43 H 0.066 0.934 44 H 0.063 0.937 45 H 0.048 0.952 46 H 0.081 0.919 47 H 0.098 0.902 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.476 -1.564 -4.375 26.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.172 4.172 3 C -0.031 4.031 4 C 0.034 3.966 5 C -0.205 4.205 6 C -0.208 4.208 7 C -0.090 4.090 8 N -0.125 5.125 9 N -0.155 5.155 10 C 0.004 3.996 11 N -0.190 5.190 12 C -0.058 4.058 13 C -0.153 4.153 14 C -0.007 4.007 15 C -0.548 4.548 16 H 0.092 0.908 17 C -0.132 4.132 18 N -0.539 5.539 19 Si 0.713 3.287 20 H -0.206 1.206 21 H -0.224 1.224 22 H -0.189 1.189 23 C -0.132 4.132 24 C -0.057 4.057 25 N -0.155 5.155 26 C -0.069 4.069 27 H 0.233 0.767 28 H 0.117 0.883 29 H 0.114 0.886 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.066 0.934 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.073 0.927 40 H 0.045 0.955 41 H 0.073 0.927 42 H 0.084 0.916 43 H 0.085 0.915 44 H 0.081 0.919 45 H 0.066 0.934 46 H 0.099 0.901 47 H 0.116 0.884 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -25.958 -1.417 -5.226 26.517 hybrid contribution -0.263 0.856 0.137 0.906 sum -26.222 -0.561 -5.089 26.717 Atomic orbital electron populations 1.24850 0.95841 1.01907 1.00656 1.22908 0.94179 0.99839 1.00310 1.18593 0.84373 1.05115 0.95034 1.18830 0.83565 0.97525 0.96700 1.22032 1.02058 0.95891 1.00500 1.22074 1.02094 0.96775 0.99837 1.24398 0.95266 1.06414 0.82929 1.73973 0.96477 1.18128 1.23953 1.74678 1.11798 1.20447 1.08624 1.22615 0.85854 1.02677 0.88486 1.58820 1.02687 1.05790 1.51738 1.22269 0.94473 0.89087 0.99975 1.22088 0.93827 1.00638 0.98795 1.19217 0.93640 0.90155 0.97725 1.21007 1.06320 1.09406 1.18098 0.90763 1.25020 0.95033 0.97945 0.95213 1.69897 1.13554 1.33884 1.36606 0.86909 0.76258 0.82875 0.82641 1.20566 1.22444 1.18919 1.21537 0.93455 0.99925 0.98319 1.22278 0.95306 0.88278 0.99880 1.46109 1.06123 1.54586 1.08654 1.22214 1.02221 1.04213 0.78214 0.76732 0.88278 0.88557 0.92132 0.90804 0.91708 0.90858 0.91793 0.91972 0.93386 0.91941 0.91073 0.92666 0.95504 0.92688 0.91624 0.91507 0.91862 0.93405 0.90068 0.88375 0.89268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -1.54 19.25 29.55 0.57 -0.97 16 2 C -0.17 -1.46 10.72 -37.12 -0.40 -1.85 16 3 C 0.01 0.05 4.30 -29.52 -0.13 -0.07 16 4 C 0.04 0.33 0.52 -155.66 -0.08 0.24 16 5 C -0.15 -1.12 8.19 37.16 0.30 -0.82 16 6 C -0.15 -1.10 8.04 37.16 0.30 -0.80 16 7 C 0.18 2.24 6.35 -154.01 -0.98 1.26 16 8 N -0.28 -4.56 11.51 32.99 0.38 -4.18 16 9 N -0.31 -5.61 12.18 30.32 0.37 -5.25 16 10 C 0.36 5.82 6.42 -318.87 -2.05 3.78 16 11 N -0.46 -7.79 4.67 -174.55 -0.82 -8.60 16 12 C 0.07 1.25 5.36 -3.84 -0.02 1.23 16 13 C -0.12 -2.41 4.84 -26.65 -0.13 -2.54 16 14 C 0.01 0.26 1.75 -91.65 -0.16 0.10 16 15 C -0.51 -13.89 9.14 -34.44 -0.31 -14.21 16 16 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 17 C 0.07 1.96 5.45 -17.82 -0.10 1.87 16 18 N -0.90 -27.22 13.96 55.43 0.77 -26.45 16 19 Si 0.88 21.69 24.37 -169.99 -4.14 17.55 16 20 H -0.28 -6.63 6.89 56.52 0.39 -6.24 16 21 H -0.30 -7.38 7.11 56.52 0.40 -6.98 16 22 H -0.26 -6.27 6.53 56.52 0.37 -5.91 16 23 C -0.09 -1.79 5.32 -26.65 -0.14 -1.93 16 24 C 0.07 1.17 5.40 -3.83 -0.02 1.15 16 25 N -0.46 -5.91 3.21 -121.45 -0.39 -6.30 16 26 C 0.07 0.65 9.59 59.85 0.57 1.22 16 27 H 0.22 0.84 7.80 -54.09 -0.42 0.42 16 28 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.06 0.40 5.83 -51.93 -0.30 0.10 16 31 H 0.07 0.50 7.05 -51.93 -0.37 0.13 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.47 7.23 -51.93 -0.38 0.10 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.39 5.54 -51.93 -0.29 0.11 16 36 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.06 1.06 8.10 -51.93 -0.42 0.64 16 38 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 39 H 0.06 1.23 3.38 -51.92 -0.18 1.05 16 40 H 0.03 0.64 7.19 -51.93 -0.37 0.27 16 41 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 42 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 43 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 44 H 0.06 0.97 8.10 -51.93 -0.42 0.55 16 45 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.08 0.62 8.09 -51.93 -0.42 0.20 16 47 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 48 H 0.09 0.56 4.60 -51.93 -0.24 0.32 16 LS Contribution 371.68 15.07 5.60 5.60 Total: -1.00 -32.31 371.68 -8.62 -40.93 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -7.63 Total: -0.97 kcal Atomic # 6 Polarization: -9.57 SS G_CDS: -2.77 Total: -12.34 kcal Atomic # 7 Polarization: -51.09 SS G_CDS: 0.32 Total: -50.77 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.14 Total: 17.55 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.31 -8.62 -40.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340124797.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.408 kcal (2) G-P(sol) polarization free energy of solvation -32.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds