Wall clock time and date at job start Tue Mar 31 2020 11:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.53002 * 109.46851 * 266.66339 * 3 2 1 5 5 C 1.52995 * 109.47597 * 300.00037 * 4 3 2 6 6 C 1.53005 * 109.46951 * 60.00664 * 4 3 2 7 7 C 1.50700 * 109.46894 * 180.02562 * 4 3 2 8 8 N 1.30299 * 126.34858 * 5.70763 * 7 4 3 9 9 N 1.28524 * 110.05338 * 179.81945 * 8 7 4 10 10 C 1.31217 * 109.86491 * 0.45558 * 9 8 7 11 11 N 1.38579 * 126.47729 * 179.69236 * 10 9 8 12 12 C 1.46842 * 110.99858 * 59.27643 * 11 10 9 13 13 C 1.53040 * 109.51964 * 174.16099 * 12 11 10 14 14 C 1.53113 * 109.28104 * 59.17829 * 13 12 11 15 15 C 1.50705 * 109.52364 * 182.43780 * 14 13 12 16 16 H 1.07996 * 119.99905 * 119.68749 * 15 14 13 17 17 C 1.37875 * 120.00010 * 299.68274 * 15 14 13 18 18 N 1.31513 * 119.99784 * 179.97438 * 17 15 14 19 19 Si 1.86803 * 120.00158 * 0.02562 * 17 15 14 20 20 H 1.48491 * 109.47129 * 89.99671 * 19 17 15 21 21 H 1.48497 * 109.47045 * 209.99877 * 19 17 15 22 22 H 1.48501 * 109.47008 * 329.99556 * 19 17 15 23 23 C 1.53113 * 109.16189 * 302.34535 * 14 13 12 24 24 C 1.46843 * 110.99983 * 295.06480 * 11 10 9 25 25 N 1.36461 * 107.04937 * 359.72768 * 10 9 8 26 26 C 1.46501 * 127.13679 * 180.02562 * 25 10 9 27 27 H 4.44644 * 5.63328 * 179.97438 * 4 1 2 28 28 H 1.09001 * 109.46890 * 146.66765 * 3 2 1 29 29 H 1.08995 * 109.47545 * 26.66395 * 3 2 1 30 30 H 1.08993 * 109.47376 * 174.93069 * 5 4 3 31 31 H 1.09006 * 109.46578 * 54.93608 * 5 4 3 32 32 H 1.08999 * 109.47337 * 294.93874 * 5 4 3 33 33 H 1.09000 * 109.46662 * 299.99405 * 6 4 3 34 34 H 1.08996 * 109.46969 * 59.99946 * 6 4 3 35 35 H 1.08995 * 109.46652 * 179.97438 * 6 4 3 36 36 H 1.09001 * 109.46315 * 294.17352 * 12 11 10 37 37 H 1.09002 * 109.46580 * 54.14491 * 12 11 10 38 38 H 1.09001 * 109.50474 * 299.23054 * 13 12 11 39 39 H 1.09011 * 109.50023 * 179.12176 * 13 12 11 40 40 H 1.09006 * 109.51938 * 62.25103 * 14 13 12 41 41 H 0.97003 * 119.99822 * 180.02562 * 18 17 15 42 42 H 1.09004 * 109.50021 * 297.71359 * 23 14 13 43 43 H 1.08998 * 109.50605 * 177.59683 * 23 14 13 44 44 H 1.09000 * 109.46523 * 305.85410 * 24 11 10 45 45 H 1.08994 * 109.46539 * 65.82276 * 24 11 10 46 46 H 1.09002 * 109.46876 * 274.95282 * 26 25 10 47 47 H 1.09006 * 109.46792 * 34.95130 * 26 25 10 48 48 H 1.08997 * 109.46856 * 154.95232 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 6 3.1560 0.0848 1.4401 5 6 2.6454 1.3736 2.0875 6 6 2.6466 -1.1207 2.2328 7 6 4.6630 0.0862 1.4401 8 7 5.4352 0.1304 0.3915 9 7 6.6688 0.1203 0.7519 10 6 6.7506 0.0588 2.0601 11 7 7.9141 0.0238 2.8121 12 6 8.7360 1.2154 2.5656 13 6 9.9359 1.2145 3.5155 14 6 10.7615 -0.0544 3.2860 15 6 11.9112 -0.0902 4.2597 16 1 11.9981 -0.9054 4.9627 17 6 12.8520 0.9176 4.2529 18 7 13.8550 0.8865 5.1030 19 14 12.7013 2.3279 3.0373 20 1 11.8983 3.4201 3.6433 21 1 14.0547 2.8373 2.6998 22 1 12.0311 1.8474 1.8023 23 6 9.8697 -1.2802 3.5018 24 6 8.6718 -1.2069 2.5523 25 7 5.4735 0.0351 2.5402 26 6 5.0571 -0.0307 3.9432 27 1 -1.0499 0.0002 0.0000 28 1 3.0090 0.8595 -0.5647 29 1 3.0099 -0.9175 -0.4611 30 1 2.9327 1.3907 3.1387 31 1 1.5591 1.4150 2.0070 32 1 3.0805 2.2333 1.5779 33 1 1.5566 -1.1211 2.2327 34 1 3.0104 -2.0388 1.7715 35 1 3.0102 -1.0609 3.2585 36 1 9.0892 1.2060 1.5344 37 1 8.1382 2.1107 2.7364 38 1 9.5836 1.2379 4.5468 39 1 10.5542 2.0911 3.3217 40 1 11.1464 -0.0590 2.2662 41 1 14.5167 1.5958 5.0985 42 1 9.5164 -1.2960 4.5329 43 1 10.4407 -2.1860 3.2982 44 1 8.0273 -2.0711 2.7135 45 1 9.0252 -1.2050 1.5212 46 1 5.0399 -1.0709 4.2687 47 1 5.7608 0.5308 4.5578 48 1 4.0607 0.3989 4.0470 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001340124797.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:20 Heat of formation + Delta-G solvation = 118.502559 kcal Electronic energy + Delta-G solvation = -27076.259252 eV Core-core repulsion = 23554.489601 eV Total energy + Delta-G solvation = -3521.769650 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.16379 -40.18206 -38.68527 -36.16747 -35.67484 -33.84099 -33.26549 -31.95188 -30.29450 -28.92409 -28.39001 -28.27642 -27.57937 -24.37343 -24.06248 -23.82895 -22.12712 -21.00943 -20.37400 -18.84329 -18.63885 -18.36001 -17.46936 -17.24767 -16.59546 -16.37673 -15.89449 -15.53067 -15.34319 -15.23837 -14.88204 -14.77613 -14.38576 -14.25652 -14.10302 -13.82674 -13.71583 -13.59513 -13.42926 -13.00474 -12.87742 -12.83121 -12.55529 -12.30589 -12.24108 -12.17421 -12.15111 -11.76869 -11.70873 -11.45967 -11.13147 -11.03588 -11.01874 -10.94858 -10.94164 -10.65761 -10.10845 -9.87959 -8.28563 -6.31122 0.61957 1.15534 1.28921 1.36868 1.45469 1.68736 1.94444 2.00018 2.32378 2.64111 3.03935 3.06689 3.44328 3.71776 3.79719 3.81779 3.83245 3.98691 4.01725 4.08271 4.24772 4.33239 4.34528 4.41603 4.47495 4.54049 4.57753 4.62635 4.69227 4.70851 4.74610 4.79261 4.85779 4.89859 4.93902 4.96641 5.00294 5.03862 5.16525 5.20224 5.24297 5.25181 5.45618 5.55974 5.66985 5.68525 5.76713 6.22530 6.33082 6.75875 6.76866 7.34149 7.62313 8.88061 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.032291 B = 0.002874 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.896878 B = 9741.862063 C = 9940.327513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.207 4.207 3 C 0.010 3.990 4 C 0.039 3.961 5 C -0.143 4.143 6 C -0.146 4.146 7 C 0.198 3.802 8 N -0.320 5.320 9 N -0.347 5.347 10 C 0.344 3.656 11 N -0.455 5.455 12 C 0.079 3.921 13 C -0.109 4.109 14 C 0.009 3.991 15 C -0.510 4.510 16 H 0.040 0.960 17 C 0.014 3.986 18 N -0.948 5.948 19 Si 0.941 3.059 20 H -0.263 1.263 21 H -0.301 1.301 22 H -0.253 1.253 23 C -0.086 4.086 24 C 0.079 3.921 25 N -0.456 5.456 26 C 0.064 3.936 27 H 0.246 0.754 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.051 0.949 33 H 0.086 0.914 34 H 0.053 0.947 35 H 0.076 0.924 36 H 0.035 0.965 37 H 0.078 0.922 38 H 0.071 0.929 39 H 0.044 0.956 40 H 0.016 0.984 41 H 0.265 0.735 42 H 0.066 0.934 43 H 0.067 0.933 44 H 0.085 0.915 45 H 0.036 0.964 46 H 0.097 0.903 47 H 0.095 0.905 48 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.295 -1.157 -4.319 30.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.207 4.207 3 C -0.028 4.028 4 C 0.036 3.964 5 C -0.201 4.201 6 C -0.203 4.203 7 C -0.071 4.071 8 N -0.160 5.160 9 N -0.191 5.191 10 C -0.014 4.014 11 N -0.181 5.181 12 C -0.048 4.048 13 C -0.147 4.147 14 C -0.010 4.010 15 C -0.548 4.548 16 H 0.058 0.942 17 C -0.183 4.183 18 N -0.589 5.589 19 Si 0.768 3.232 20 H -0.188 1.188 21 H -0.229 1.229 22 H -0.177 1.177 23 C -0.124 4.124 24 C -0.048 4.048 25 N -0.147 5.147 26 C -0.077 4.077 27 H 0.262 0.738 28 H 0.104 0.896 29 H 0.103 0.897 30 H 0.093 0.907 31 H 0.106 0.894 32 H 0.070 0.930 33 H 0.105 0.895 34 H 0.073 0.927 35 H 0.095 0.905 36 H 0.053 0.947 37 H 0.097 0.903 38 H 0.090 0.910 39 H 0.062 0.938 40 H 0.034 0.966 41 H 0.074 0.926 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.103 0.897 45 H 0.054 0.946 46 H 0.116 0.884 47 H 0.114 0.886 48 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -29.814 -1.020 -5.161 30.274 hybrid contribution 0.815 0.637 0.144 1.045 sum -28.998 -0.383 -5.017 29.431 Atomic orbital electron populations 1.25603 0.96533 1.00016 0.98814 1.22873 0.94255 1.01546 1.02026 1.18434 0.85334 1.04008 0.94988 1.19037 0.80973 0.99228 0.97183 1.22016 1.02783 0.94324 1.00944 1.22063 1.02927 0.95264 1.00095 1.25104 0.96536 1.03298 0.82117 1.73913 0.96269 1.20227 1.25556 1.74574 1.13161 1.21427 1.09903 1.22449 0.86465 1.04156 0.88284 1.58757 1.02703 1.04955 1.51708 1.22063 0.93889 0.90614 0.98264 1.21892 0.94438 0.98771 0.99549 1.19183 0.93155 0.93071 0.95566 1.21307 1.07753 1.07938 1.17826 0.94203 1.25803 0.94746 1.00731 0.96982 1.70036 1.14816 1.35178 1.38856 0.85962 0.76204 0.80159 0.80846 1.18840 1.22858 1.17738 1.21394 0.93742 0.98231 0.99000 1.22128 0.94821 0.89429 0.98373 1.46278 1.04808 1.53486 1.10151 1.22587 1.03643 1.05647 0.75786 0.73804 0.89624 0.89689 0.90651 0.89433 0.93012 0.89477 0.92744 0.90494 0.94668 0.90312 0.91008 0.93789 0.96571 0.92644 0.91504 0.91408 0.89672 0.94568 0.88411 0.88584 0.86361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.13 19.25 74.32 1.43 -0.70 16 2 C -0.21 -3.06 10.72 31.13 0.33 -2.73 16 3 C 0.01 0.16 4.30 28.79 0.12 0.29 16 4 C 0.04 0.60 0.52 -52.93 -0.03 0.58 16 5 C -0.14 -1.76 8.19 71.98 0.59 -1.17 16 6 C -0.15 -1.69 8.04 71.98 0.58 -1.11 16 7 C 0.20 4.67 6.35 137.64 0.87 5.55 16 8 N -0.32 -10.10 11.51 -49.53 -0.57 -10.67 16 9 N -0.35 -12.33 12.18 -58.00 -0.71 -13.03 16 10 C 0.34 10.63 6.42 260.11 1.67 12.31 16 11 N -0.46 -14.59 4.67 -706.17 -3.30 -17.89 16 12 C 0.08 2.78 5.36 86.33 0.46 3.24 16 13 C -0.11 -4.43 4.84 30.65 0.15 -4.28 16 14 C 0.01 0.42 1.75 -11.46 -0.02 0.40 16 15 C -0.51 -28.40 9.14 25.60 0.23 -28.17 16 16 H 0.04 2.43 7.99 -2.91 -0.02 2.41 16 17 C 0.01 0.83 5.45 84.65 0.46 1.29 16 18 N -0.95 -58.87 13.96 21.45 0.30 -58.57 16 19 Si 0.94 45.06 24.37 68.60 1.67 46.73 16 20 H -0.26 -11.82 6.89 99.48 0.69 -11.13 16 21 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 22 H -0.25 -11.55 6.53 99.48 0.65 -10.90 16 23 C -0.09 -3.21 5.32 30.65 0.16 -3.05 16 24 C 0.08 2.59 5.40 86.33 0.47 3.06 16 25 N -0.46 -10.60 3.21 -538.16 -1.73 -12.33 16 26 C 0.06 0.90 9.59 127.77 1.23 2.13 16 27 H 0.25 0.87 7.80 -4.42 -0.03 0.83 16 28 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.07 0.69 5.83 -2.39 -0.01 0.68 16 31 H 0.09 0.88 7.05 -2.38 -0.02 0.86 16 32 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.09 0.81 7.23 -2.39 -0.02 0.79 16 34 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.08 0.66 5.54 -2.39 -0.01 0.64 16 36 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.08 2.53 8.10 -2.39 -0.02 2.51 16 38 H 0.07 2.90 8.14 -2.39 -0.02 2.88 16 39 H 0.04 1.89 3.38 -2.38 -0.01 1.88 16 40 H 0.02 0.77 7.19 -2.38 -0.02 0.75 16 41 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 42 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 43 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 44 H 0.08 2.44 8.10 -2.39 -0.02 2.42 16 45 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 46 H 0.10 1.10 8.09 -2.39 -0.02 1.08 16 47 H 0.10 1.46 8.14 -2.38 -0.02 1.44 16 48 H 0.12 0.95 4.60 -2.39 -0.01 0.94 16 Total: -1.00 -72.16 371.68 5.25 -66.91 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: 0.86 Total: 11.22 kcal Atomic # 6 Polarization: -21.09 SS G_CDS: 8.71 Total: -12.37 kcal Atomic # 7 Polarization: -106.49 SS G_CDS: -6.00 Total: -112.49 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 1.67 Total: 46.73 kcal Total: -72.16 5.25 -66.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340124797.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.412 kcal (2) G-P(sol) polarization free energy of solvation -72.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds