Wall clock time and date at job start Tue Mar 31 2020 11:45:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50708 * 119.99564 * 2 1 4 4 N 1.46500 * 109.46763 * 124.99967 * 3 2 1 5 5 C 1.36743 * 127.13489 * 269.46386 * 4 3 2 6 6 C 1.50700 * 126.34893 * 0.05561 * 5 4 3 7 7 H 1.08999 * 115.55073 * 25.58835 * 6 5 4 8 8 C 1.52998 * 117.49628 * 171.25497 * 6 5 4 9 9 C 1.53000 * 117.49967 * 239.91351 * 6 5 4 10 10 H 1.09004 * 117.49491 * 145.02190 * 9 6 5 11 11 C 1.52998 * 117.49798 * 0.02915 * 9 6 5 12 12 N 1.30299 * 107.30316 * 180.02562 * 5 4 3 13 13 N 1.28527 * 110.05456 * 359.72687 * 12 5 4 14 14 C 1.31223 * 109.85831 * 0.45037 * 13 12 5 15 15 N 1.38574 * 126.47102 * 179.82171 * 14 13 12 16 16 C 1.46844 * 110.99944 * 61.32105 * 15 14 13 17 17 C 1.53042 * 109.52360 * 174.16187 * 16 15 14 18 18 C 1.53117 * 109.28019 * 59.17682 * 17 16 15 19 19 C 1.50693 * 109.52226 * 182.37778 * 18 17 16 20 20 H 1.08010 * 120.00369 * 359.87926 * 19 18 17 21 21 C 1.37879 * 120.00237 * 179.87330 * 19 18 17 22 22 N 1.31519 * 119.99823 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00307 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.46947 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47175 * 120.00207 * 23 21 19 26 26 H 1.48504 * 109.47057 * 240.00249 * 23 21 19 27 27 C 1.53114 * 109.21277 * 302.31518 * 18 17 16 28 28 C 1.46845 * 111.00225 * 297.10973 * 15 14 13 29 29 H 1.07999 * 119.99754 * 179.97438 * 1 2 3 30 30 H 1.08000 * 120.00221 * 0.02562 * 1 2 3 31 31 H 1.07993 * 120.00030 * 179.97438 * 2 1 3 32 32 H 1.09004 * 109.47125 * 4.99963 * 3 2 1 33 33 H 1.08993 * 109.46805 * 244.99910 * 3 2 1 34 34 H 1.09004 * 117.49715 * 214.97785 * 8 6 5 35 35 H 1.08990 * 117.50154 * 0.02562 * 8 6 5 36 36 H 1.08992 * 109.47481 * 59.99486 * 11 9 6 37 37 H 1.09007 * 109.46734 * 179.97438 * 11 9 6 38 38 H 1.08999 * 109.47117 * 299.99066 * 11 9 6 39 39 H 1.08998 * 109.46386 * 54.14806 * 16 15 14 40 40 H 1.08998 * 109.46639 * 294.17156 * 16 15 14 41 41 H 1.09004 * 109.49976 * 299.23821 * 17 16 15 42 42 H 1.08999 * 109.53628 * 179.14440 * 17 16 15 43 43 H 1.09001 * 109.51882 * 62.25205 * 18 17 16 44 44 H 0.96998 * 120.00235 * 180.02562 * 22 21 19 45 45 H 1.09002 * 109.50546 * 177.62946 * 27 18 17 46 46 H 1.09002 * 109.50576 * 297.74669 * 27 18 17 47 47 H 1.09004 * 109.46421 * 305.85489 * 28 15 14 48 48 H 1.09006 * 109.46255 * 65.83126 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9937 1.3320 1.1315 5 6 2.7476 1.8028 2.3915 6 6 1.4544 2.3979 2.8859 7 1 0.5567 2.0763 2.3579 8 6 1.3313 2.6730 4.3859 9 6 1.4916 3.8368 3.4046 10 1 0.6181 4.4617 3.2181 11 6 2.8388 4.5617 3.3810 12 7 3.8384 1.6409 3.0856 13 7 4.7480 1.0988 2.3571 14 6 4.2855 0.8928 1.1464 15 7 4.9766 0.3301 0.0853 16 6 5.3894 -1.0445 0.3959 17 6 6.0188 -1.6822 -0.8448 18 6 7.2292 -0.8521 -1.2811 19 6 7.8182 -1.4420 -2.5364 20 1 7.3757 -2.3224 -2.9788 21 6 8.9221 -0.8578 -3.1206 22 7 9.4613 0.2140 -2.5818 23 14 9.6519 -1.5886 -4.6771 24 1 8.8671 -2.7839 -5.0779 25 1 9.6083 -0.5793 -5.7655 26 1 11.0610 -1.9840 -4.4249 27 6 6.7818 0.5868 -1.5529 28 6 6.1292 1.1586 -0.2906 29 1 -0.5400 -0.9353 -0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8500 -0.9352 0.0004 32 1 1.3584 2.1317 0.0896 33 1 2.6212 1.4027 -0.9313 34 1 0.3525 2.5328 4.8447 35 1 2.1858 2.4240 5.0150 36 1 3.2045 4.6155 2.3557 37 1 2.7157 5.5702 3.7760 38 1 3.5558 4.0159 3.9943 39 1 4.5187 -1.6251 0.7006 40 1 6.1183 -1.0305 1.2063 41 1 5.2861 -1.7091 -1.6514 42 1 6.3391 -2.6973 -0.6102 43 1 7.9787 -0.8572 -0.4897 44 1 10.2377 0.6252 -2.9929 45 1 7.6471 1.1920 -1.8232 46 1 6.0611 0.5955 -2.3707 47 1 5.7959 2.1782 -0.4845 48 1 6.8547 1.1622 0.5230 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340420163.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:32 Heat of formation + Delta-G solvation = 125.338098 kcal Electronic energy + Delta-G solvation = -27168.327970 eV Core-core repulsion = 23646.854731 eV Total energy + Delta-G solvation = -3521.473239 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.84664 -38.49271 -37.76531 -36.23540 -34.00854 -32.78647 -31.49185 -29.97355 -29.31217 -28.38124 -26.94173 -25.67178 -23.94956 -22.65103 -22.21709 -21.39569 -20.92092 -20.12716 -19.70516 -18.50758 -17.23929 -16.62960 -16.25630 -16.02974 -15.65733 -15.00123 -14.60619 -14.54182 -14.13021 -13.80571 -13.41688 -13.26038 -12.93838 -12.78971 -12.59703 -12.47964 -12.35657 -12.14291 -11.76909 -11.71952 -11.59365 -11.30854 -11.05333 -10.91728 -10.81488 -10.54131 -10.37865 -10.30054 -10.28712 -10.15882 -9.97005 -9.83194 -9.54635 -9.08473 -8.80102 -8.60181 -8.32608 -8.27836 -5.99576 -4.05160 1.66353 1.85027 2.54370 2.92223 3.29300 3.37789 3.41250 3.64763 4.06306 4.18031 4.41317 4.43655 4.50115 4.53183 4.62952 4.77611 5.01628 5.12540 5.26726 5.30524 5.33231 5.38822 5.55282 5.56039 5.63293 5.67149 5.76274 5.82589 5.90030 5.97545 5.98795 6.11336 6.16814 6.19910 6.24639 6.25816 6.33456 6.43507 6.52345 6.72860 6.78068 6.93391 7.06218 7.35507 7.39201 7.66940 7.75399 7.98788 8.09247 8.43705 8.93760 8.98567 9.59621 11.06748 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.021042 B = 0.003209 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.374615 B = 8724.718826 C = 9375.197025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.166 4.166 3 C 0.141 3.859 4 N -0.461 5.461 5 C 0.204 3.796 6 C -0.082 4.082 7 H 0.119 0.881 8 C -0.146 4.146 9 C -0.132 4.132 10 H 0.111 0.889 11 C -0.125 4.125 12 N -0.286 5.286 13 N -0.314 5.314 14 C 0.363 3.637 15 N -0.465 5.465 16 C 0.074 3.926 17 C -0.105 4.105 18 C 0.046 3.954 19 C -0.510 4.510 20 H 0.055 0.945 21 C 0.061 3.939 22 N -0.890 5.890 23 Si 0.890 3.110 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.285 1.285 27 C -0.102 4.102 28 C 0.070 3.930 29 H 0.104 0.896 30 H 0.099 0.901 31 H 0.118 0.882 32 H 0.093 0.907 33 H 0.112 0.888 34 H 0.101 0.899 35 H 0.110 0.890 36 H 0.053 0.947 37 H 0.059 0.941 38 H 0.071 0.929 39 H 0.056 0.944 40 H 0.046 0.954 41 H 0.058 0.942 42 H 0.058 0.942 43 H 0.026 0.974 44 H 0.259 0.741 45 H 0.100 0.900 46 H 0.044 0.956 47 H 0.054 0.946 48 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.083 5.828 8.256 22.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.185 4.185 3 C 0.018 3.982 4 N -0.154 5.154 5 C -0.062 4.062 6 C -0.102 4.102 7 H 0.137 0.863 8 C -0.184 4.184 9 C -0.151 4.151 10 H 0.129 0.871 11 C -0.182 4.182 12 N -0.127 5.127 13 N -0.157 5.157 14 C 0.007 3.993 15 N -0.192 5.192 16 C -0.053 4.053 17 C -0.143 4.143 18 C 0.028 3.972 19 C -0.548 4.548 20 H 0.074 0.926 21 C -0.140 4.140 22 N -0.530 5.530 23 Si 0.718 3.282 24 H -0.198 1.198 25 H -0.211 1.211 26 H -0.211 1.211 27 C -0.141 4.141 28 C -0.056 4.056 29 H 0.123 0.877 30 H 0.117 0.883 31 H 0.136 0.864 32 H 0.112 0.888 33 H 0.130 0.870 34 H 0.119 0.881 35 H 0.129 0.871 36 H 0.072 0.928 37 H 0.078 0.922 38 H 0.090 0.910 39 H 0.074 0.926 40 H 0.064 0.936 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.044 0.956 44 H 0.069 0.931 45 H 0.118 0.882 46 H 0.063 0.937 47 H 0.073 0.927 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -19.244 5.940 8.953 22.040 hybrid contribution -0.033 -0.465 -1.558 1.626 sum -19.276 5.476 7.395 21.360 Atomic orbital electron populations 1.23895 0.95425 1.02343 0.99298 1.23139 0.96133 0.98460 1.00789 1.20908 0.91643 0.96705 0.88923 1.46262 1.11373 1.46660 1.11066 1.23498 0.97807 1.02926 0.82014 1.20154 0.91604 0.99522 0.98951 0.86298 1.23195 1.03955 1.00819 0.90455 1.22488 1.00284 0.89283 1.03059 0.87143 1.21378 0.94845 0.99743 1.02223 1.73923 0.97215 1.15820 1.25699 1.74698 1.23002 1.17240 1.00738 1.22699 0.84024 1.00045 0.92540 1.58936 1.27046 1.03864 1.29363 1.22181 0.98485 0.85275 0.99321 1.21723 0.99186 0.98671 0.94695 1.18711 0.91207 0.90827 0.96474 1.21204 1.12141 1.11953 1.09544 0.92625 1.24973 0.96717 0.95006 0.97317 1.69872 1.22651 1.20519 1.39918 0.86574 0.79025 0.79162 0.83446 1.19847 1.21105 1.21112 1.21761 0.99495 1.00365 0.92457 1.22410 0.88557 0.94490 1.00167 0.87722 0.88293 0.86419 0.88839 0.86958 0.88066 0.87145 0.92825 0.92156 0.90984 0.92569 0.93594 0.92357 0.92373 0.95616 0.93061 0.88197 0.93671 0.92725 0.93742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.31 14.32 29.01 0.42 -0.89 16 2 C -0.17 -1.67 9.85 -36.02 -0.35 -2.03 16 3 C 0.14 1.53 6.46 -5.19 -0.03 1.50 16 4 N -0.46 -6.64 2.79 -115.36 -0.32 -6.97 16 5 C 0.20 2.90 6.73 -154.01 -1.04 1.86 16 6 C -0.08 -0.82 5.86 -91.77 -0.54 -1.35 16 7 H 0.12 0.94 8.14 -51.93 -0.42 0.52 16 8 C -0.15 -1.29 9.80 -26.70 -0.26 -1.55 16 9 C -0.13 -1.14 6.41 -90.58 -0.58 -1.72 16 10 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 11 C -0.12 -1.30 9.13 37.16 0.34 -0.96 16 12 N -0.29 -4.97 10.95 32.99 0.36 -4.61 16 13 N -0.31 -6.12 12.19 30.31 0.37 -5.75 16 14 C 0.36 6.43 6.41 -318.88 -2.04 4.39 16 15 N -0.47 -8.53 4.67 -174.47 -0.81 -9.35 16 16 C 0.07 1.38 5.37 -3.83 -0.02 1.36 16 17 C -0.10 -2.13 5.32 -26.65 -0.14 -2.27 16 18 C 0.05 1.12 2.16 -91.66 -0.20 0.92 16 19 C -0.51 -13.64 8.56 -34.44 -0.29 -13.94 16 20 H 0.06 1.47 7.75 -52.48 -0.41 1.07 16 21 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 22 N -0.89 -24.98 11.36 55.43 0.63 -24.35 16 23 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 24 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 25 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 26 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 27 C -0.10 -2.34 5.13 -26.58 -0.14 -2.48 16 28 C 0.07 1.41 5.39 -3.76 -0.02 1.39 16 29 H 0.10 0.71 8.06 -52.49 -0.42 0.29 16 30 H 0.10 0.58 7.84 -52.49 -0.41 0.17 16 31 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 32 H 0.09 0.77 7.57 -51.93 -0.39 0.38 16 33 H 0.11 1.30 8.14 -51.93 -0.42 0.88 16 34 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.11 1.17 7.83 -51.93 -0.41 0.76 16 36 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 38 H 0.07 0.90 7.22 -51.93 -0.37 0.52 16 39 H 0.06 0.96 8.10 -51.93 -0.42 0.54 16 40 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 45 H 0.10 2.56 6.16 -51.93 -0.32 2.24 16 46 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.05 1.04 8.10 -51.93 -0.42 0.62 16 48 H 0.04 0.97 8.14 -51.93 -0.42 0.54 16 LS Contribution 387.72 15.07 5.84 5.84 Total: -1.00 -30.10 387.72 -12.16 -42.26 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -8.21 Total: 1.18 kcal Atomic # 6 Polarization: -9.22 SS G_CDS: -5.00 Total: -14.22 kcal Atomic # 7 Polarization: -51.25 SS G_CDS: 0.22 Total: -51.03 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -30.10 -12.16 -42.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340420163.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.601 kcal (2) G-P(sol) polarization free energy of solvation -30.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds