Wall clock time and date at job start Tue Mar 31 2020 11:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50708 * 119.99564 * 2 1 4 4 N 1.46500 * 109.46763 * 124.99967 * 3 2 1 5 5 C 1.36743 * 127.13489 * 269.46386 * 4 3 2 6 6 C 1.50700 * 126.34893 * 0.05561 * 5 4 3 7 7 H 1.08999 * 115.55073 * 25.58835 * 6 5 4 8 8 C 1.52998 * 117.49628 * 171.25497 * 6 5 4 9 9 C 1.53000 * 117.49967 * 239.91351 * 6 5 4 10 10 H 1.09004 * 117.49491 * 145.02190 * 9 6 5 11 11 C 1.52998 * 117.49798 * 0.02915 * 9 6 5 12 12 N 1.30299 * 107.30316 * 180.02562 * 5 4 3 13 13 N 1.28527 * 110.05456 * 359.72687 * 12 5 4 14 14 C 1.31223 * 109.85831 * 0.45037 * 13 12 5 15 15 N 1.38574 * 126.47102 * 179.82171 * 14 13 12 16 16 C 1.46844 * 110.99944 * 61.32105 * 15 14 13 17 17 C 1.53042 * 109.52360 * 174.16187 * 16 15 14 18 18 C 1.53117 * 109.28019 * 59.17682 * 17 16 15 19 19 C 1.50693 * 109.52226 * 182.37778 * 18 17 16 20 20 H 1.08010 * 120.00369 * 359.87926 * 19 18 17 21 21 C 1.37879 * 120.00237 * 179.87330 * 19 18 17 22 22 N 1.31519 * 119.99823 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00307 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.46947 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47175 * 120.00207 * 23 21 19 26 26 H 1.48504 * 109.47057 * 240.00249 * 23 21 19 27 27 C 1.53114 * 109.21277 * 302.31518 * 18 17 16 28 28 C 1.46845 * 111.00225 * 297.10973 * 15 14 13 29 29 H 1.07999 * 119.99754 * 179.97438 * 1 2 3 30 30 H 1.08000 * 120.00221 * 0.02562 * 1 2 3 31 31 H 1.07993 * 120.00030 * 179.97438 * 2 1 3 32 32 H 1.09004 * 109.47125 * 4.99963 * 3 2 1 33 33 H 1.08993 * 109.46805 * 244.99910 * 3 2 1 34 34 H 1.09004 * 117.49715 * 214.97785 * 8 6 5 35 35 H 1.08990 * 117.50154 * 0.02562 * 8 6 5 36 36 H 1.08992 * 109.47481 * 59.99486 * 11 9 6 37 37 H 1.09007 * 109.46734 * 179.97438 * 11 9 6 38 38 H 1.08999 * 109.47117 * 299.99066 * 11 9 6 39 39 H 1.08998 * 109.46386 * 54.14806 * 16 15 14 40 40 H 1.08998 * 109.46639 * 294.17156 * 16 15 14 41 41 H 1.09004 * 109.49976 * 299.23821 * 17 16 15 42 42 H 1.08999 * 109.53628 * 179.14440 * 17 16 15 43 43 H 1.09001 * 109.51882 * 62.25205 * 18 17 16 44 44 H 0.96998 * 120.00235 * 180.02562 * 22 21 19 45 45 H 1.09002 * 109.50546 * 177.62946 * 27 18 17 46 46 H 1.09002 * 109.50576 * 297.74669 * 27 18 17 47 47 H 1.09004 * 109.46421 * 305.85489 * 28 15 14 48 48 H 1.09006 * 109.46255 * 65.83126 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9937 1.3320 1.1315 5 6 2.7476 1.8028 2.3915 6 6 1.4544 2.3979 2.8859 7 1 0.5567 2.0763 2.3579 8 6 1.3313 2.6730 4.3859 9 6 1.4916 3.8368 3.4046 10 1 0.6181 4.4617 3.2181 11 6 2.8388 4.5617 3.3810 12 7 3.8384 1.6409 3.0856 13 7 4.7480 1.0988 2.3571 14 6 4.2855 0.8928 1.1464 15 7 4.9766 0.3301 0.0853 16 6 5.3894 -1.0445 0.3959 17 6 6.0188 -1.6822 -0.8448 18 6 7.2292 -0.8521 -1.2811 19 6 7.8182 -1.4420 -2.5364 20 1 7.3757 -2.3224 -2.9788 21 6 8.9221 -0.8578 -3.1206 22 7 9.4613 0.2140 -2.5818 23 14 9.6519 -1.5886 -4.6771 24 1 8.8671 -2.7839 -5.0779 25 1 9.6083 -0.5793 -5.7655 26 1 11.0610 -1.9840 -4.4249 27 6 6.7818 0.5868 -1.5529 28 6 6.1292 1.1586 -0.2906 29 1 -0.5400 -0.9353 -0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8500 -0.9352 0.0004 32 1 1.3584 2.1317 0.0896 33 1 2.6212 1.4027 -0.9313 34 1 0.3525 2.5328 4.8447 35 1 2.1858 2.4240 5.0150 36 1 3.2045 4.6155 2.3557 37 1 2.7157 5.5702 3.7760 38 1 3.5558 4.0159 3.9943 39 1 4.5187 -1.6251 0.7006 40 1 6.1183 -1.0305 1.2063 41 1 5.2861 -1.7091 -1.6514 42 1 6.3391 -2.6973 -0.6102 43 1 7.9787 -0.8572 -0.4897 44 1 10.2377 0.6252 -2.9929 45 1 7.6471 1.1920 -1.8232 46 1 6.0611 0.5955 -2.3707 47 1 5.7959 2.1782 -0.4845 48 1 6.8547 1.1622 0.5230 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001340420163.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:31 Heat of formation + Delta-G solvation = 111.654409 kcal Electronic energy + Delta-G solvation = -27168.921340 eV Core-core repulsion = 23646.854731 eV Total energy + Delta-G solvation = -3522.066608 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.07235 -39.99991 -38.66941 -37.16203 -35.83085 -33.76397 -33.30347 -31.69526 -30.55718 -29.35775 -27.97104 -27.41144 -24.94081 -24.35238 -23.93508 -22.41521 -21.93783 -21.12723 -20.64756 -20.16926 -18.54128 -18.25398 -17.57847 -17.33384 -16.55166 -16.47277 -15.93910 -15.75716 -15.34978 -15.09642 -14.65491 -14.60185 -14.42138 -14.24388 -14.04733 -13.71682 -13.29543 -13.24567 -13.07907 -12.89392 -12.76888 -12.67413 -12.47161 -12.39477 -12.26658 -12.16029 -12.01677 -11.75078 -11.56278 -11.38633 -11.09128 -11.00178 -10.92892 -10.75233 -10.52046 -10.41384 -9.84211 -9.83598 -8.07716 -6.21086 0.60593 0.92059 1.41698 1.44027 1.54979 1.55742 1.68166 2.44757 2.71766 2.87511 3.19915 3.26916 3.58590 3.77653 3.80119 3.84971 3.87727 4.05655 4.09431 4.14838 4.27379 4.37184 4.45362 4.47529 4.51623 4.55807 4.59741 4.65368 4.82461 4.83920 4.87255 4.91625 4.96295 4.97946 5.03015 5.10145 5.17392 5.19828 5.21306 5.42371 5.47828 5.56059 5.59166 5.62264 5.71006 5.74131 5.97907 6.11906 6.28630 6.37724 6.90089 7.47159 7.67715 8.97552 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.021042 B = 0.003209 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.374615 B = 8724.718826 C = 9375.197025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.198 4.198 3 C 0.137 3.863 4 N -0.455 5.455 5 C 0.223 3.777 6 C -0.096 4.096 7 H 0.152 0.848 8 C -0.141 4.141 9 C -0.118 4.118 10 H 0.148 0.852 11 C -0.126 4.126 12 N -0.322 5.322 13 N -0.352 5.352 14 C 0.343 3.657 15 N -0.453 5.453 16 C 0.083 3.917 17 C -0.093 4.093 18 C 0.043 3.957 19 C -0.528 4.528 20 H 0.056 0.944 21 C 0.012 3.988 22 N -0.918 5.918 23 Si 0.954 3.046 24 H -0.266 1.266 25 H -0.280 1.280 26 H -0.284 1.284 27 C -0.088 4.088 28 C 0.086 3.914 29 H 0.115 0.885 30 H 0.127 0.873 31 H 0.093 0.907 32 H 0.128 0.872 33 H 0.100 0.900 34 H 0.135 0.865 35 H 0.085 0.915 36 H 0.034 0.966 37 H 0.080 0.920 38 H 0.043 0.957 39 H 0.077 0.923 40 H 0.026 0.974 41 H 0.065 0.935 42 H 0.064 0.936 43 H -0.012 1.012 44 H 0.260 0.740 45 H 0.070 0.930 46 H 0.045 0.955 47 H 0.065 0.935 48 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.159 6.286 7.857 26.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.217 4.217 3 C 0.017 3.983 4 N -0.146 5.146 5 C -0.045 4.045 6 C -0.116 4.116 7 H 0.170 0.830 8 C -0.179 4.179 9 C -0.137 4.137 10 H 0.166 0.834 11 C -0.184 4.184 12 N -0.161 5.161 13 N -0.196 5.196 14 C -0.014 4.014 15 N -0.179 5.179 16 C -0.044 4.044 17 C -0.130 4.130 18 C 0.025 3.975 19 C -0.566 4.566 20 H 0.074 0.926 21 C -0.187 4.187 22 N -0.558 5.558 23 Si 0.780 3.220 24 H -0.190 1.190 25 H -0.206 1.206 26 H -0.211 1.211 27 C -0.127 4.127 28 C -0.041 4.041 29 H 0.133 0.867 30 H 0.145 0.855 31 H 0.112 0.888 32 H 0.146 0.854 33 H 0.118 0.882 34 H 0.153 0.847 35 H 0.103 0.897 36 H 0.053 0.947 37 H 0.098 0.902 38 H 0.062 0.938 39 H 0.096 0.904 40 H 0.045 0.955 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.006 0.994 44 H 0.069 0.931 45 H 0.088 0.912 46 H 0.063 0.937 47 H 0.084 0.916 48 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -23.346 6.391 8.549 25.671 hybrid contribution 1.146 -0.565 -1.356 1.863 sum -22.201 5.826 7.193 24.053 Atomic orbital electron populations 1.24184 0.94335 1.04147 0.94884 1.22913 0.96980 0.96999 1.04832 1.21202 0.91437 0.98613 0.87084 1.46465 1.10525 1.45505 1.12097 1.24373 0.98321 1.00391 0.81383 1.20550 0.90316 1.00604 1.00153 0.83002 1.23265 1.04703 1.00415 0.89503 1.22604 1.00228 0.88770 1.02115 0.83444 1.21365 0.95549 1.00918 1.00521 1.73860 0.98285 1.17515 1.26481 1.74580 1.24802 1.18315 1.01861 1.22516 0.85450 1.01526 0.91941 1.58842 1.25808 1.03309 1.29971 1.22043 0.98683 0.85891 0.97737 1.21549 0.97629 0.98363 0.95505 1.18671 0.91894 0.92318 0.94649 1.21544 1.12594 1.12082 1.10349 0.92552 1.25751 0.97202 0.95368 1.00331 1.70021 1.22963 1.21600 1.41242 0.85560 0.78041 0.78618 0.79744 1.18974 1.20618 1.21060 1.21473 0.98404 0.99212 0.93600 1.22086 0.88826 0.95229 0.97988 0.86713 0.85533 0.88837 0.85392 0.88185 0.84734 0.89677 0.94668 0.90160 0.93827 0.90435 0.95549 0.91674 0.91772 0.99390 0.93091 0.91207 0.93658 0.91643 0.96134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 14.32 67.78 0.97 -0.54 16 2 C -0.20 -3.52 9.85 25.65 0.25 -3.27 16 3 C 0.14 2.69 6.46 85.64 0.55 3.24 16 4 N -0.45 -12.70 2.79 -518.90 -1.45 -14.15 16 5 C 0.22 6.09 6.73 137.64 0.93 7.01 16 6 C -0.10 -1.59 5.86 -11.54 -0.07 -1.65 16 7 H 0.15 1.54 8.14 -2.39 -0.02 1.52 16 8 C -0.14 -2.05 9.80 30.62 0.30 -1.75 16 9 C -0.12 -1.62 6.41 -10.77 -0.07 -1.69 16 10 H 0.15 1.05 8.14 -2.38 -0.02 1.03 16 11 C -0.13 -2.48 9.13 71.98 0.66 -1.82 16 12 N -0.32 -11.43 10.95 -49.53 -0.54 -11.98 16 13 N -0.35 -14.31 12.19 -58.01 -0.71 -15.02 16 14 C 0.34 12.42 6.41 260.11 1.67 14.08 16 15 N -0.45 -17.10 4.67 -705.89 -3.30 -20.39 16 16 C 0.08 3.20 5.37 86.33 0.46 3.66 16 17 C -0.09 -3.84 5.32 30.65 0.16 -3.68 16 18 C 0.04 2.19 2.16 -11.46 -0.02 2.16 16 19 C -0.53 -28.87 8.56 25.60 0.22 -28.65 16 20 H 0.06 3.01 7.75 -2.91 -0.02 2.98 16 21 C 0.01 0.66 5.30 84.65 0.45 1.11 16 22 N -0.92 -53.29 11.36 21.45 0.24 -53.05 16 23 Si 0.95 43.53 29.54 68.60 2.03 45.56 16 24 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 25 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 26 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 27 C -0.09 -4.23 5.13 30.69 0.16 -4.07 16 28 C 0.09 3.63 5.39 86.37 0.47 4.10 16 29 H 0.11 1.07 8.06 -2.91 -0.02 1.05 16 30 H 0.13 0.72 7.84 -2.91 -0.02 0.70 16 31 H 0.09 2.11 8.06 -2.91 -0.02 2.09 16 32 H 0.13 1.58 7.57 -2.38 -0.02 1.56 16 33 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.13 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.08 1.72 7.83 -2.39 -0.02 1.70 16 36 H 0.03 0.80 8.14 -2.39 -0.02 0.79 16 37 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 38 H 0.04 1.10 7.22 -2.39 -0.02 1.08 16 39 H 0.08 2.65 8.10 -2.39 -0.02 2.63 16 40 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.06 2.61 8.14 -2.38 -0.02 2.59 16 42 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 43 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 44 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 45 H 0.07 3.78 6.16 -2.39 -0.01 3.76 16 46 H 0.04 2.12 8.14 -2.39 -0.02 2.11 16 47 H 0.07 2.60 8.10 -2.38 -0.02 2.58 16 48 H 0.02 0.95 8.14 -2.38 -0.02 0.93 16 Total: -1.00 -69.94 387.72 4.28 -65.66 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: 0.92 Total: 15.12 kcal Atomic # 6 Polarization: -18.84 SS G_CDS: 7.08 Total: -11.76 kcal Atomic # 7 Polarization: -108.83 SS G_CDS: -5.75 Total: -114.58 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -69.94 4.28 -65.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340420163.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.316 kcal (2) G-P(sol) polarization free energy of solvation -69.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds