Wall clock time and date at job start Tue Mar 31 2020 11:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50695 * 119.99761 * 2 1 4 4 N 1.46501 * 109.46996 * 125.19994 * 3 2 1 5 5 C 1.36734 * 127.13778 * 270.82594 * 4 3 2 6 6 C 1.50703 * 126.34776 * 0.02562 * 5 4 3 7 7 H 1.09004 * 115.54792 * 334.32349 * 6 5 4 8 8 C 1.52999 * 117.49779 * 188.62067 * 6 5 4 9 9 C 1.52996 * 117.50017 * 119.99881 * 6 5 4 10 10 H 1.08999 * 117.50005 * 359.97438 * 9 6 5 11 11 C 1.53000 * 117.49470 * 215.00193 * 9 6 5 12 12 N 1.30295 * 107.30711 * 179.97438 * 5 4 3 13 13 N 1.28527 * 110.05283 * 359.73306 * 12 5 4 14 14 C 1.31216 * 109.85843 * 0.44957 * 13 12 5 15 15 N 1.38576 * 126.47375 * 179.82658 * 14 13 12 16 16 C 1.46856 * 110.99977 * 296.84992 * 15 14 13 17 17 C 1.53033 * 109.52466 * 185.83962 * 16 15 14 18 18 C 1.53121 * 109.27938 * 300.81710 * 17 16 15 19 19 C 1.50696 * 109.52423 * 177.55684 * 18 17 16 20 20 H 1.08000 * 119.99852 * 359.73234 * 19 18 17 21 21 C 1.37880 * 119.99899 * 179.97438 * 19 18 17 22 22 N 1.31507 * 120.00237 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 119.99796 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.46970 * 60.00285 * 23 21 19 25 25 H 1.48498 * 109.46994 * 180.02562 * 23 21 19 26 26 H 1.48491 * 109.47201 * 300.00433 * 23 21 19 27 27 C 1.53123 * 109.15711 * 57.65592 * 18 17 16 28 28 C 1.46852 * 111.00116 * 61.05639 * 15 14 13 29 29 H 1.08003 * 120.00113 * 180.02562 * 1 2 3 30 30 H 1.08002 * 119.99765 * 359.97438 * 1 2 3 31 31 H 1.07998 * 119.99623 * 179.97438 * 2 1 3 32 32 H 1.08999 * 109.47674 * 5.19670 * 3 2 1 33 33 H 1.09004 * 109.46753 * 245.19549 * 3 2 1 34 34 H 1.09000 * 117.49994 * 359.97438 * 8 6 5 35 35 H 1.09001 * 117.49652 * 145.02086 * 8 6 5 36 36 H 1.08999 * 109.47403 * 60.00283 * 11 9 6 37 37 H 1.09007 * 109.47056 * 179.97438 * 11 9 6 38 38 H 1.08998 * 109.47333 * 299.99725 * 11 9 6 39 39 H 1.09000 * 109.46371 * 65.82180 * 16 15 14 40 40 H 1.08998 * 109.45807 * 305.85269 * 16 15 14 41 41 H 1.08998 * 109.50664 * 180.88038 * 17 16 15 42 42 H 1.09002 * 109.50490 * 60.75899 * 17 16 15 43 43 H 1.08991 * 109.52360 * 297.69155 * 18 17 16 44 44 H 0.96996 * 120.00045 * 180.02562 * 22 21 19 45 45 H 1.08997 * 109.50599 * 62.29044 * 27 18 17 46 46 H 1.09004 * 109.50124 * 182.40557 * 27 18 17 47 47 H 1.08996 * 109.46268 * 294.17903 * 28 15 14 48 48 H 1.08997 * 109.46209 * 54.14769 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9971 1.3299 1.1287 5 6 2.7472 1.7748 2.3972 6 6 1.4452 2.3383 2.9058 7 1 0.8023 2.7912 2.1510 8 6 1.4432 2.9622 4.3028 9 6 0.7663 1.6104 4.0677 10 1 1.2611 0.7237 4.4640 11 6 -0.7632 1.5739 4.0812 12 7 3.8429 1.6204 3.0851 13 7 4.7594 1.1068 2.3447 14 6 4.2966 0.9134 1.1322 15 7 4.9938 0.3810 0.0595 16 6 6.1270 1.2391 -0.3096 17 6 6.7838 0.6997 -1.5823 18 6 7.2638 -0.7332 -1.3351 19 6 7.8577 -1.2911 -2.6028 20 1 7.8861 -0.6866 -3.4974 21 6 8.3602 -2.5749 -2.6219 22 7 8.3207 -3.3127 -1.5341 23 14 9.0970 -3.2662 -4.1932 24 1 10.2464 -2.4248 -4.6129 25 1 9.5620 -4.6557 -3.9523 26 1 8.0678 -3.2677 -5.2636 27 6 6.0733 -1.5949 -0.9054 28 6 5.4371 -0.9890 0.3477 29 1 -0.5400 -0.9353 0.0004 30 1 -0.5400 0.9353 0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3589 2.1315 0.0931 33 1 2.6185 1.4041 -0.9329 34 1 2.3834 2.9647 4.8542 35 1 0.7989 3.8258 4.4673 36 1 -1.1228 1.0767 3.1803 37 1 -1.1058 1.0264 4.9593 38 1 -1.1507 2.5922 4.1135 39 1 6.8563 1.2461 0.5005 40 1 5.7713 2.2541 -0.4867 41 1 7.6343 1.3277 -1.8472 42 1 6.0589 0.7053 -2.3963 43 1 8.0180 -0.7340 -0.5483 44 1 8.6746 -4.2158 -1.5475 45 1 5.3373 -1.6254 -1.7088 46 1 6.4162 -2.6062 -0.6867 47 1 6.1695 -0.9716 1.1547 48 1 4.5804 -1.5923 0.6480 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340420164.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:34 Heat of formation + Delta-G solvation = 123.476282 kcal Electronic energy + Delta-G solvation = -26999.181509 eV Core-core repulsion = 23477.627535 eV Total energy + Delta-G solvation = -3521.553974 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.84153 -38.47322 -37.79655 -36.21520 -34.02020 -32.77598 -31.54400 -30.02904 -29.73559 -28.05195 -26.93165 -25.64609 -23.95714 -22.63695 -22.20227 -21.13342 -21.09809 -20.19079 -19.90189 -18.52152 -17.44197 -16.51546 -16.14976 -15.98310 -15.73110 -14.95544 -14.54730 -14.43447 -14.14892 -13.79461 -13.54924 -13.40729 -13.12433 -12.79428 -12.66403 -12.50660 -12.42470 -12.04711 -11.75189 -11.71610 -11.57980 -11.40420 -11.04449 -10.89810 -10.86377 -10.60361 -10.41362 -10.35165 -10.29655 -10.15239 -9.98183 -9.79324 -9.53913 -9.07984 -8.81924 -8.60719 -8.32103 -8.28339 -5.99134 -4.04874 1.68141 1.85524 2.54859 2.91327 3.31862 3.36970 3.39217 3.63609 4.04539 4.15635 4.40988 4.43766 4.53944 4.60281 4.61013 4.65975 5.02252 5.03457 5.24332 5.29641 5.31496 5.35360 5.44662 5.51571 5.59390 5.61121 5.73174 5.73794 5.83280 5.97748 5.98499 6.04518 6.11954 6.17752 6.21625 6.28905 6.36640 6.44082 6.52289 6.72034 6.77650 6.93223 7.06175 7.35360 7.39199 7.66368 7.75053 7.99003 8.09126 8.43853 8.92418 8.98422 9.59762 11.07225 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.023905 B = 0.003035 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.033495 B = 9224.220101 C = 9678.522797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.166 4.166 3 C 0.142 3.858 4 N -0.461 5.461 5 C 0.201 3.799 6 C -0.077 4.077 7 H 0.118 0.882 8 C -0.146 4.146 9 C -0.132 4.132 10 H 0.109 0.891 11 C -0.122 4.122 12 N -0.288 5.288 13 N -0.313 5.313 14 C 0.363 3.637 15 N -0.465 5.465 16 C 0.072 3.928 17 C -0.105 4.105 18 C 0.047 3.953 19 C -0.512 4.512 20 H 0.055 0.945 21 C 0.062 3.938 22 N -0.891 5.891 23 Si 0.890 3.110 24 H -0.278 1.278 25 H -0.288 1.288 26 H -0.278 1.278 27 C -0.102 4.102 28 C 0.072 3.928 29 H 0.104 0.896 30 H 0.098 0.902 31 H 0.118 0.882 32 H 0.092 0.908 33 H 0.112 0.888 34 H 0.109 0.891 35 H 0.102 0.898 36 H 0.061 0.939 37 H 0.064 0.936 38 H 0.058 0.942 39 H 0.046 0.954 40 H 0.057 0.943 41 H 0.058 0.942 42 H 0.058 0.942 43 H 0.026 0.974 44 H 0.261 0.739 45 H 0.045 0.955 46 H 0.099 0.901 47 H 0.044 0.956 48 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.539 10.361 6.790 23.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.185 4.185 3 C 0.020 3.980 4 N -0.154 5.154 5 C -0.066 4.066 6 C -0.098 4.098 7 H 0.136 0.864 8 C -0.184 4.184 9 C -0.151 4.151 10 H 0.127 0.873 11 C -0.179 4.179 12 N -0.129 5.129 13 N -0.156 5.156 14 C 0.007 3.993 15 N -0.192 5.192 16 C -0.055 4.055 17 C -0.143 4.143 18 C 0.028 3.972 19 C -0.550 4.550 20 H 0.073 0.927 21 C -0.140 4.140 22 N -0.530 5.530 23 Si 0.718 3.282 24 H -0.203 1.203 25 H -0.214 1.214 26 H -0.204 1.204 27 C -0.141 4.141 28 C -0.055 4.055 29 H 0.123 0.877 30 H 0.116 0.884 31 H 0.136 0.864 32 H 0.110 0.890 33 H 0.130 0.870 34 H 0.128 0.872 35 H 0.120 0.880 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.077 0.923 39 H 0.064 0.936 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.044 0.956 44 H 0.071 0.929 45 H 0.064 0.936 46 H 0.117 0.883 47 H 0.063 0.937 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -18.797 10.174 7.577 22.677 hybrid contribution 0.041 -0.544 -1.508 1.603 sum -18.756 9.630 6.069 21.940 Atomic orbital electron populations 1.23868 0.95398 1.02262 0.99192 1.23116 0.96154 0.98392 1.00869 1.20894 0.91472 0.96772 0.88895 1.46274 1.10916 1.47384 1.10781 1.23590 0.97689 1.03418 0.81903 1.20092 0.91623 1.05364 0.92698 0.86365 1.23185 1.03383 0.96003 0.95799 1.22480 0.95437 0.97222 1.00002 0.87335 1.21396 0.92249 1.02034 1.02267 1.73929 0.96981 1.16184 1.25805 1.74694 1.23042 1.17572 1.00339 1.22718 0.83934 1.00083 0.92535 1.58960 1.26631 1.04426 1.29195 1.22207 0.89773 0.94185 0.99289 1.21723 0.98521 0.99707 0.94323 1.18703 0.93009 0.88627 0.96813 1.21126 1.38703 0.98648 0.96526 0.92718 1.24967 0.95834 0.97094 0.96056 1.69848 1.46360 1.09584 1.27184 0.86688 0.79594 0.78021 0.83853 1.20334 1.21368 1.20360 1.21738 0.97188 1.02395 0.92765 1.22373 0.98213 0.84216 1.00657 0.87741 0.88369 0.86390 0.89008 0.87005 0.87213 0.87984 0.92049 0.91745 0.92319 0.93580 0.92479 0.92337 0.92348 0.95595 0.92937 0.93650 0.88253 0.93729 0.92777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.34 14.32 29.01 0.42 -0.93 16 2 C -0.17 -1.74 9.85 -36.03 -0.35 -2.10 16 3 C 0.14 1.55 6.45 -5.20 -0.03 1.52 16 4 N -0.46 -6.72 2.79 -115.37 -0.32 -7.04 16 5 C 0.20 2.90 7.59 -154.02 -1.17 1.74 16 6 C -0.08 -0.77 5.72 -91.77 -0.52 -1.30 16 7 H 0.12 0.93 7.56 -51.93 -0.39 0.53 16 8 C -0.15 -1.29 9.79 -26.73 -0.26 -1.55 16 9 C -0.13 -1.17 6.11 -90.62 -0.55 -1.72 16 10 H 0.11 1.16 8.14 -51.93 -0.42 0.73 16 11 C -0.12 -0.77 10.19 37.16 0.38 -0.39 16 12 N -0.29 -5.16 11.79 32.99 0.39 -4.78 16 13 N -0.31 -6.22 12.19 30.31 0.37 -5.85 16 14 C 0.36 6.51 6.41 -318.88 -2.05 4.47 16 15 N -0.47 -8.59 4.67 -174.55 -0.82 -9.41 16 16 C 0.07 1.35 5.39 -3.83 -0.02 1.33 16 17 C -0.10 -2.13 5.32 -26.65 -0.14 -2.27 16 18 C 0.05 1.14 2.16 -91.65 -0.20 0.94 16 19 C -0.51 -13.70 8.56 -34.44 -0.29 -14.00 16 20 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 21 C 0.06 1.68 5.31 -17.82 -0.09 1.58 16 22 N -0.89 -25.05 11.37 55.43 0.63 -24.42 16 23 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 26 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 27 C -0.10 -2.35 5.12 -26.65 -0.14 -2.49 16 28 C 0.07 1.45 5.37 -3.83 -0.02 1.43 16 29 H 0.10 0.75 8.06 -52.48 -0.42 0.33 16 30 H 0.10 0.60 7.84 -52.49 -0.41 0.19 16 31 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 32 H 0.09 0.74 7.12 -51.93 -0.37 0.37 16 33 H 0.11 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.11 1.16 7.92 -51.93 -0.41 0.75 16 35 H 0.10 0.66 8.05 -51.93 -0.42 0.25 16 36 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.06 0.30 7.90 -51.93 -0.41 -0.11 16 39 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.06 0.97 8.10 -51.93 -0.42 0.55 16 41 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 45 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.10 2.55 6.18 -51.93 -0.32 2.23 16 47 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 48 H 0.05 1.04 8.10 -51.93 -0.42 0.62 16 LS Contribution 389.69 15.07 5.87 5.87 Total: -1.00 -30.40 389.69 -12.14 -42.54 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -8.19 Total: 0.84 kcal Atomic # 6 Polarization: -8.69 SS G_CDS: -5.06 Total: -13.74 kcal Atomic # 7 Polarization: -51.74 SS G_CDS: 0.25 Total: -51.49 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -30.40 -12.14 -42.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340420164.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.014 kcal (2) G-P(sol) polarization free energy of solvation -30.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds