Wall clock time and date at job start Tue Mar 31 2020 11:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50695 * 119.99761 * 2 1 4 4 N 1.46501 * 109.46996 * 125.19994 * 3 2 1 5 5 C 1.36734 * 127.13778 * 270.82594 * 4 3 2 6 6 C 1.50703 * 126.34776 * 0.02562 * 5 4 3 7 7 H 1.09004 * 115.54792 * 334.32349 * 6 5 4 8 8 C 1.52999 * 117.49779 * 188.62067 * 6 5 4 9 9 C 1.52996 * 117.50017 * 119.99881 * 6 5 4 10 10 H 1.08999 * 117.50005 * 359.97438 * 9 6 5 11 11 C 1.53000 * 117.49470 * 215.00193 * 9 6 5 12 12 N 1.30295 * 107.30711 * 179.97438 * 5 4 3 13 13 N 1.28527 * 110.05283 * 359.73306 * 12 5 4 14 14 C 1.31216 * 109.85843 * 0.44957 * 13 12 5 15 15 N 1.38576 * 126.47375 * 179.82658 * 14 13 12 16 16 C 1.46856 * 110.99977 * 296.84992 * 15 14 13 17 17 C 1.53033 * 109.52466 * 185.83962 * 16 15 14 18 18 C 1.53121 * 109.27938 * 300.81710 * 17 16 15 19 19 C 1.50696 * 109.52423 * 177.55684 * 18 17 16 20 20 H 1.08000 * 119.99852 * 359.73234 * 19 18 17 21 21 C 1.37880 * 119.99899 * 179.97438 * 19 18 17 22 22 N 1.31507 * 120.00237 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 119.99796 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.46970 * 60.00285 * 23 21 19 25 25 H 1.48498 * 109.46994 * 180.02562 * 23 21 19 26 26 H 1.48491 * 109.47201 * 300.00433 * 23 21 19 27 27 C 1.53123 * 109.15711 * 57.65592 * 18 17 16 28 28 C 1.46852 * 111.00116 * 61.05639 * 15 14 13 29 29 H 1.08003 * 120.00113 * 180.02562 * 1 2 3 30 30 H 1.08002 * 119.99765 * 359.97438 * 1 2 3 31 31 H 1.07998 * 119.99623 * 179.97438 * 2 1 3 32 32 H 1.08999 * 109.47674 * 5.19670 * 3 2 1 33 33 H 1.09004 * 109.46753 * 245.19549 * 3 2 1 34 34 H 1.09000 * 117.49994 * 359.97438 * 8 6 5 35 35 H 1.09001 * 117.49652 * 145.02086 * 8 6 5 36 36 H 1.08999 * 109.47403 * 60.00283 * 11 9 6 37 37 H 1.09007 * 109.47056 * 179.97438 * 11 9 6 38 38 H 1.08998 * 109.47333 * 299.99725 * 11 9 6 39 39 H 1.09000 * 109.46371 * 65.82180 * 16 15 14 40 40 H 1.08998 * 109.45807 * 305.85269 * 16 15 14 41 41 H 1.08998 * 109.50664 * 180.88038 * 17 16 15 42 42 H 1.09002 * 109.50490 * 60.75899 * 17 16 15 43 43 H 1.08991 * 109.52360 * 297.69155 * 18 17 16 44 44 H 0.96996 * 120.00045 * 180.02562 * 22 21 19 45 45 H 1.08997 * 109.50599 * 62.29044 * 27 18 17 46 46 H 1.09004 * 109.50124 * 182.40557 * 27 18 17 47 47 H 1.08996 * 109.46268 * 294.17903 * 28 15 14 48 48 H 1.08997 * 109.46209 * 54.14769 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9971 1.3299 1.1287 5 6 2.7472 1.7748 2.3972 6 6 1.4452 2.3383 2.9058 7 1 0.8023 2.7912 2.1510 8 6 1.4432 2.9622 4.3028 9 6 0.7663 1.6104 4.0677 10 1 1.2611 0.7237 4.4640 11 6 -0.7632 1.5739 4.0812 12 7 3.8429 1.6204 3.0851 13 7 4.7594 1.1068 2.3447 14 6 4.2966 0.9134 1.1322 15 7 4.9938 0.3810 0.0595 16 6 6.1270 1.2391 -0.3096 17 6 6.7838 0.6997 -1.5823 18 6 7.2638 -0.7332 -1.3351 19 6 7.8577 -1.2911 -2.6028 20 1 7.8861 -0.6866 -3.4974 21 6 8.3602 -2.5749 -2.6219 22 7 8.3207 -3.3127 -1.5341 23 14 9.0970 -3.2662 -4.1932 24 1 10.2464 -2.4248 -4.6129 25 1 9.5620 -4.6557 -3.9523 26 1 8.0678 -3.2677 -5.2636 27 6 6.0733 -1.5949 -0.9054 28 6 5.4371 -0.9890 0.3477 29 1 -0.5400 -0.9353 0.0004 30 1 -0.5400 0.9353 0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3589 2.1315 0.0931 33 1 2.6185 1.4041 -0.9329 34 1 2.3834 2.9647 4.8542 35 1 0.7989 3.8258 4.4673 36 1 -1.1228 1.0767 3.1803 37 1 -1.1058 1.0264 4.9593 38 1 -1.1507 2.5922 4.1135 39 1 6.8563 1.2461 0.5005 40 1 5.7713 2.2541 -0.4867 41 1 7.6343 1.3277 -1.8472 42 1 6.0589 0.7053 -2.3963 43 1 8.0180 -0.7340 -0.5483 44 1 8.6746 -4.2158 -1.5475 45 1 5.3373 -1.6254 -1.7088 46 1 6.4162 -2.6062 -0.6867 47 1 6.1695 -0.9716 1.1547 48 1 4.5804 -1.5923 0.6480 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001340420164.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:34 Heat of formation + Delta-G solvation = 109.642617 kcal Electronic energy + Delta-G solvation = -26999.781381 eV Core-core repulsion = 23477.627535 eV Total energy + Delta-G solvation = -3522.153846 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.09203 -40.00033 -38.66729 -37.16526 -35.84433 -33.77523 -33.34474 -31.71189 -30.89508 -28.98639 -27.92846 -27.39774 -24.96067 -24.33279 -23.93372 -22.32685 -21.86630 -21.29637 -20.76433 -20.23017 -18.61198 -18.38598 -17.48823 -17.26783 -16.71886 -16.52139 -15.90649 -15.61670 -15.15012 -15.05070 -14.68494 -14.60042 -14.45415 -14.23560 -14.06310 -13.74798 -13.34828 -13.25462 -12.95746 -12.82012 -12.73250 -12.66016 -12.48389 -12.45943 -12.31119 -12.16431 -12.01953 -11.78896 -11.59476 -11.39206 -11.08772 -11.05130 -10.92554 -10.76992 -10.51661 -10.40795 -9.88062 -9.83366 -8.07528 -6.21069 0.57024 0.91633 1.43762 1.44643 1.52238 1.54848 1.64240 2.44841 2.70060 2.87189 3.20060 3.23400 3.57505 3.77730 3.83699 3.84930 3.90090 3.96110 4.09176 4.13821 4.26614 4.37083 4.42761 4.44853 4.52566 4.54469 4.60892 4.64827 4.84337 4.84790 4.90216 4.96501 4.97560 5.00815 5.02607 5.16510 5.19867 5.21449 5.24596 5.44754 5.46650 5.54786 5.58139 5.62165 5.70376 5.73201 5.97727 6.11121 6.26679 6.37485 6.89997 7.47149 7.63814 8.97502 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.023905 B = 0.003035 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.033495 B = 9224.220101 C = 9678.522797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.201 4.201 3 C 0.139 3.861 4 N -0.454 5.454 5 C 0.220 3.780 6 C -0.088 4.088 7 H 0.154 0.846 8 C -0.140 4.140 9 C -0.125 4.125 10 H 0.081 0.919 11 C -0.117 4.117 12 N -0.328 5.328 13 N -0.352 5.352 14 C 0.345 3.655 15 N -0.453 5.453 16 C 0.080 3.920 17 C -0.093 4.093 18 C 0.043 3.957 19 C -0.529 4.529 20 H 0.057 0.943 21 C 0.012 3.988 22 N -0.919 5.919 23 Si 0.954 3.046 24 H -0.272 1.272 25 H -0.287 1.287 26 H -0.269 1.269 27 C -0.088 4.088 28 C 0.088 3.912 29 H 0.112 0.888 30 H 0.129 0.871 31 H 0.086 0.914 32 H 0.131 0.869 33 H 0.104 0.896 34 H 0.085 0.915 35 H 0.135 0.865 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.077 0.923 39 H 0.026 0.974 40 H 0.082 0.918 41 H 0.065 0.935 42 H 0.066 0.934 43 H -0.012 1.012 44 H 0.260 0.740 45 H 0.044 0.956 46 H 0.068 0.932 47 H 0.020 0.980 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.114 12.256 5.781 26.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.220 4.220 3 C 0.018 3.982 4 N -0.145 5.145 5 C -0.048 4.048 6 C -0.108 4.108 7 H 0.171 0.829 8 C -0.178 4.178 9 C -0.145 4.145 10 H 0.100 0.900 11 C -0.174 4.174 12 N -0.168 5.168 13 N -0.196 5.196 14 C -0.013 4.013 15 N -0.179 5.179 16 C -0.047 4.047 17 C -0.131 4.131 18 C 0.025 3.975 19 C -0.567 4.567 20 H 0.076 0.924 21 C -0.187 4.187 22 N -0.559 5.559 23 Si 0.780 3.220 24 H -0.198 1.198 25 H -0.213 1.213 26 H -0.194 1.194 27 C -0.126 4.126 28 C -0.039 4.039 29 H 0.130 0.870 30 H 0.147 0.853 31 H 0.105 0.895 32 H 0.149 0.851 33 H 0.122 0.878 34 H 0.103 0.897 35 H 0.153 0.847 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.096 0.904 39 H 0.045 0.955 40 H 0.100 0.900 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.006 0.994 44 H 0.069 0.931 45 H 0.063 0.937 46 H 0.087 0.913 47 H 0.038 0.962 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -22.393 12.083 6.557 26.276 hybrid contribution 1.047 -1.126 -1.112 1.898 sum -21.346 10.957 5.445 24.604 Atomic orbital electron populations 1.24159 0.94266 1.04105 0.94670 1.22888 0.97069 0.96989 1.05041 1.21221 0.91338 0.98441 0.87188 1.46480 1.10026 1.46194 1.11814 1.24476 0.98226 1.00791 0.81321 1.20486 0.89993 1.06304 0.94014 0.82854 1.23260 1.02936 0.97247 0.94366 1.22487 0.97161 0.96225 0.98580 0.90026 1.21405 0.89619 1.03480 1.02848 1.73853 0.98165 1.18155 1.26657 1.74572 1.24875 1.18659 1.01468 1.22547 0.85369 1.01482 0.91901 1.58874 1.26201 1.03285 1.29548 1.22101 0.89556 0.95335 0.97689 1.21553 0.99004 0.97171 0.95336 1.18668 0.92509 0.91434 0.94907 1.21496 1.38901 0.99015 0.97327 0.92433 1.25757 0.96317 0.97526 0.99056 1.70007 1.47068 1.09726 1.29090 0.85671 0.78966 0.77150 0.80215 1.19764 1.21314 1.19409 1.21445 0.96723 1.00761 0.93702 1.22029 0.97617 0.85866 0.98377 0.86985 0.85258 0.89544 0.85092 0.87762 0.89658 0.84720 0.91248 0.91439 0.90370 0.95524 0.89954 0.91614 0.91549 0.99395 0.93092 0.93696 0.91331 0.96152 0.92023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.61 14.32 67.77 0.97 -0.64 16 2 C -0.20 -3.83 9.85 25.64 0.25 -3.58 16 3 C 0.14 2.69 6.45 85.63 0.55 3.24 16 4 N -0.45 -12.77 2.79 -518.92 -1.45 -14.22 16 5 C 0.22 6.12 7.59 137.64 1.04 7.17 16 6 C -0.09 -1.49 5.72 -11.54 -0.07 -1.55 16 7 H 0.15 1.55 7.56 -2.39 -0.02 1.53 16 8 C -0.14 -2.13 9.79 30.59 0.30 -1.83 16 9 C -0.12 -1.91 6.11 -10.80 -0.07 -1.97 16 10 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 11 C -0.12 -0.99 10.19 71.98 0.73 -0.26 16 12 N -0.33 -12.01 11.79 -49.54 -0.58 -12.59 16 13 N -0.35 -14.54 12.19 -58.01 -0.71 -15.25 16 14 C 0.34 12.57 6.41 260.11 1.67 14.24 16 15 N -0.45 -17.13 4.67 -706.14 -3.30 -20.43 16 16 C 0.08 3.04 5.39 86.32 0.47 3.50 16 17 C -0.09 -3.81 5.32 30.65 0.16 -3.65 16 18 C 0.04 2.19 2.16 -11.46 -0.02 2.17 16 19 C -0.53 -28.93 8.56 25.60 0.22 -28.71 16 20 H 0.06 3.04 7.74 -2.91 -0.02 3.02 16 21 C 0.01 0.66 5.31 84.66 0.45 1.11 16 22 N -0.92 -53.57 11.37 21.45 0.24 -53.33 16 23 Si 0.95 43.52 29.54 68.60 2.03 45.54 16 24 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 25 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 26 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 27 C -0.09 -4.23 5.12 30.65 0.16 -4.07 16 28 C 0.09 3.78 5.37 86.33 0.46 4.24 16 29 H 0.11 1.20 8.06 -2.91 -0.02 1.18 16 30 H 0.13 0.78 7.84 -2.91 -0.02 0.76 16 31 H 0.09 2.19 8.06 -2.91 -0.02 2.16 16 32 H 0.13 1.47 7.12 -2.39 -0.02 1.46 16 33 H 0.10 2.18 8.14 -2.38 -0.02 2.16 16 34 H 0.08 1.76 7.92 -2.39 -0.02 1.74 16 35 H 0.13 1.17 8.05 -2.39 -0.02 1.15 16 36 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 37 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 38 H 0.08 0.40 7.90 -2.39 -0.02 0.38 16 39 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.08 2.73 8.10 -2.39 -0.02 2.71 16 41 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 42 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 43 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 44 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 45 H 0.04 2.12 8.14 -2.39 -0.02 2.10 16 46 H 0.07 3.74 6.18 -2.38 -0.01 3.72 16 47 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 48 H 0.06 2.51 8.10 -2.39 -0.02 2.49 16 Total: -1.00 -70.59 389.69 4.43 -66.15 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: 0.92 Total: 14.71 kcal Atomic # 6 Polarization: -17.88 SS G_CDS: 7.28 Total: -10.60 kcal Atomic # 7 Polarization: -110.02 SS G_CDS: -5.79 Total: -115.81 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.54 kcal Total: -70.59 4.43 -66.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340420164.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.797 kcal (2) G-P(sol) polarization free energy of solvation -70.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds