Wall clock time and date at job start Tue Mar 31 2020 11:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 C 1.52999 * 109.47087 * 179.05541 * 3 2 1 5 5 H 1.08998 * 109.47253 * 305.00235 * 4 3 2 6 6 C 1.52999 * 109.46965 * 65.00128 * 4 3 2 7 7 C 1.53004 * 109.47257 * 185.00017 * 6 4 3 8 8 C 1.50702 * 109.47443 * 184.99842 * 4 3 2 9 9 N 1.30289 * 126.34487 * 300.03033 * 8 4 3 10 10 N 1.28537 * 110.05064 * 179.97438 * 9 8 4 11 11 C 1.31212 * 109.85706 * 359.97438 * 10 9 8 12 12 N 1.38582 * 126.47044 * 179.97438 * 11 10 9 13 13 C 1.46892 * 111.00508 * 260.14126 * 12 11 10 14 14 C 1.46902 * 110.99656 * 24.09594 * 12 11 10 15 15 H 1.08998 * 109.47422 * 299.99378 * 14 12 11 16 16 C 1.53005 * 109.47304 * 60.00038 * 14 12 11 17 17 C 1.50708 * 109.46989 * 179.97438 * 14 12 11 18 18 H 1.07994 * 119.99684 * 359.97438 * 17 14 12 19 19 C 1.37878 * 119.99835 * 180.02562 * 17 14 12 20 20 N 1.31517 * 120.00231 * 359.97438 * 19 17 14 21 21 Si 1.86799 * 119.99835 * 180.02562 * 19 17 14 22 22 H 1.48504 * 109.47016 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.46995 * 119.99493 * 21 19 17 24 24 H 1.48500 * 109.46875 * 239.99702 * 21 19 17 25 25 N 1.36451 * 107.05622 * 359.76543 * 11 10 9 26 26 C 1.46500 * 127.13362 * 180.24036 * 25 11 10 27 27 C 1.50700 * 109.47061 * 268.34139 * 26 25 11 28 28 C 1.31001 * 119.99766 * 122.07945 * 27 26 25 29 29 H 4.44651 * 5.63389 * 180.02562 * 4 1 2 30 30 H 1.09000 * 109.47098 * 299.05729 * 3 2 1 31 31 H 1.09001 * 109.46912 * 59.05848 * 3 2 1 32 32 H 1.09008 * 109.47100 * 304.99790 * 6 4 3 33 33 H 1.09002 * 109.47325 * 64.99868 * 6 4 3 34 34 H 1.09002 * 109.47243 * 179.97438 * 7 6 4 35 35 H 1.08998 * 109.46970 * 299.99869 * 7 6 4 36 36 H 1.09005 * 109.46917 * 60.00192 * 7 6 4 37 37 H 1.08998 * 109.47258 * 65.66170 * 13 12 11 38 38 H 1.09004 * 109.47445 * 185.66029 * 13 12 11 39 39 H 1.09005 * 109.47353 * 305.66154 * 13 12 11 40 40 H 1.08998 * 109.47420 * 59.99339 * 16 14 12 41 41 H 1.08999 * 109.46990 * 180.02562 * 16 14 12 42 42 H 1.09001 * 109.46677 * 299.99768 * 16 14 12 43 43 H 0.96991 * 120.00173 * 179.97438 * 20 19 17 44 44 H 1.09000 * 109.47548 * 28.34735 * 26 25 11 45 45 H 1.09006 * 109.46896 * 148.34240 * 26 25 11 46 46 H 1.07995 * 120.00251 * 302.07432 * 27 26 25 47 47 H 1.08000 * 120.00324 * 359.97438 * 28 27 26 48 48 H 1.08004 * 119.99948 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1553 1.4432 -0.0238 5 1 2.7204 1.9681 -0.8743 6 6 2.7503 2.1484 1.2721 7 6 3.1497 3.6235 1.1964 8 6 4.6572 1.4437 -0.1476 9 7 5.5011 0.9074 0.6878 10 7 6.7051 1.0918 0.2773 11 6 6.6936 1.7606 -0.8515 12 7 7.7998 2.1457 -1.5921 13 6 8.1351 3.5542 -1.3442 14 6 8.9491 1.2741 -1.3136 15 1 9.2004 1.3315 -0.2545 16 6 8.5943 -0.1694 -1.6762 17 6 10.1302 1.7222 -2.1355 18 1 10.0362 2.5693 -2.7987 19 6 11.3303 1.0499 -2.0415 20 7 11.4445 0.0180 -1.2342 21 14 12.7944 1.6058 -3.0598 22 1 12.4086 2.7814 -3.8809 23 1 13.9129 1.9778 -2.1565 24 1 13.2255 0.4995 -3.9518 25 7 5.3866 2.0012 -1.1609 26 6 4.8719 2.7125 -2.3336 27 6 4.7123 4.1744 -2.0044 28 6 5.3408 5.0781 -2.7146 29 1 -1.0503 -0.0004 0.0002 30 1 3.0095 -0.4983 0.8983 31 1 3.0095 -0.5276 -0.8814 32 1 1.6712 2.0707 1.4062 33 1 3.2560 1.6779 2.1153 34 1 2.8607 4.1260 2.1195 35 1 4.2286 3.7013 1.0624 36 1 2.6438 4.0940 0.3532 37 1 8.4539 3.6751 -0.3089 38 1 8.9421 3.8584 -2.0108 39 1 7.2579 4.1744 -1.5290 40 1 8.3430 -0.2267 -2.7352 41 1 9.4469 -0.8161 -1.4691 42 1 7.7400 -0.4936 -1.0820 43 1 12.2886 -0.4552 -1.1684 44 1 5.5711 2.6008 -3.1623 45 1 3.9048 2.2959 -2.6157 46 1 4.0797 4.4771 -1.1831 47 1 5.9737 4.7755 -3.5357 48 1 5.2262 6.1259 -2.4789 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340661851.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:10 Heat of formation + Delta-G solvation = 157.913026 kcal Electronic energy + Delta-G solvation = -27541.820769 eV Core-core repulsion = 24021.760085 eV Total energy + Delta-G solvation = -3520.060684 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.54843 -37.50568 -36.68010 -35.94107 -33.16850 -32.85235 -32.50420 -30.33712 -29.26179 -28.63218 -26.72553 -25.53046 -24.64838 -24.24137 -22.79378 -21.55865 -20.52990 -19.72312 -19.15269 -18.15594 -17.01116 -16.27863 -16.07023 -15.52995 -15.27547 -14.91846 -14.59525 -14.40187 -14.18508 -13.85791 -13.84283 -13.32773 -13.27198 -12.87405 -12.59564 -12.32778 -12.17346 -11.87462 -11.69628 -11.55427 -11.32024 -11.12324 -10.98527 -10.94372 -10.89947 -10.72058 -10.38950 -10.31937 -10.21478 -10.17595 -10.06761 -9.89833 -9.70052 -9.59276 -9.16292 -8.58442 -8.44283 -7.46872 -6.04192 -4.11374 1.85000 2.20986 2.64781 2.71319 2.89087 3.27471 3.35288 3.37961 3.41724 4.11727 4.33813 4.47220 4.55973 4.66204 4.71610 4.78404 4.91895 4.99725 5.05201 5.26219 5.27917 5.42058 5.47078 5.50887 5.65796 5.69945 5.72887 5.81838 5.84671 5.86569 5.94960 6.09564 6.11251 6.18977 6.30635 6.35541 6.36600 6.52733 6.55238 6.92428 6.96149 7.12149 7.23240 7.46762 7.46943 7.71136 7.75853 7.97957 8.25029 8.47772 8.91251 9.36029 9.53322 11.02369 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.018674 B = 0.003683 C = 0.003344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.068085 B = 7600.713422 C = 8370.332699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.173 4.173 3 C -0.006 4.006 4 C 0.018 3.982 5 H 0.084 0.916 6 C -0.112 4.112 7 C -0.151 4.151 8 C 0.155 3.845 9 N -0.281 5.281 10 N -0.316 5.316 11 C 0.387 3.613 12 N -0.463 5.463 13 C 0.041 3.959 14 C 0.229 3.771 15 H 0.025 0.975 16 C -0.132 4.132 17 C -0.514 4.514 18 H 0.065 0.935 19 C 0.063 3.937 20 N -0.884 5.884 21 Si 0.899 3.101 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 N -0.474 5.474 26 C 0.140 3.860 27 C -0.186 4.186 28 C -0.155 4.155 29 H 0.216 0.784 30 H 0.102 0.898 31 H 0.089 0.911 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.056 0.944 35 H 0.054 0.946 36 H 0.050 0.950 37 H 0.028 0.972 38 H 0.090 0.910 39 H 0.051 0.949 40 H 0.025 0.975 41 H 0.089 0.911 42 H 0.018 0.982 43 H 0.262 0.738 44 H 0.106 0.894 45 H 0.094 0.906 46 H 0.114 0.886 47 H 0.106 0.894 48 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.728 7.311 -0.948 21.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.173 4.173 3 C -0.044 4.044 4 C -0.003 4.003 5 H 0.102 0.898 6 C -0.151 4.151 7 C -0.208 4.208 8 C -0.112 4.112 9 N -0.121 5.121 10 N -0.159 5.159 11 C 0.032 3.968 12 N -0.189 5.189 13 C -0.106 4.106 14 C 0.125 3.875 15 H 0.043 0.957 16 C -0.191 4.191 17 C -0.553 4.553 18 H 0.083 0.917 19 C -0.139 4.139 20 N -0.522 5.522 21 Si 0.727 3.273 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.210 1.210 25 N -0.169 5.169 26 C 0.017 3.983 27 C -0.205 4.205 28 C -0.193 4.193 29 H 0.232 0.768 30 H 0.120 0.880 31 H 0.107 0.893 32 H 0.089 0.911 33 H 0.096 0.904 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.047 0.953 38 H 0.109 0.891 39 H 0.069 0.931 40 H 0.045 0.955 41 H 0.108 0.892 42 H 0.037 0.963 43 H 0.072 0.928 44 H 0.124 0.876 45 H 0.112 0.888 46 H 0.132 0.868 47 H 0.124 0.876 48 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -19.097 6.372 -0.194 20.133 hybrid contribution 0.395 0.980 -1.074 1.506 sum -18.702 7.352 -1.268 20.135 Atomic orbital electron populations 1.24833 0.95833 1.00817 1.01930 1.22998 0.94244 1.00285 0.99812 1.18743 0.84466 0.96372 1.04772 1.19406 0.84708 0.96064 1.00128 0.89793 1.21577 1.01207 0.95605 0.96683 1.21805 1.01639 0.95977 1.01371 1.24179 0.95988 1.02004 0.89052 1.73910 0.95846 1.18960 1.23348 1.74824 1.12797 1.20144 1.08144 1.23022 0.84587 0.98113 0.91112 1.59128 1.04518 1.05304 1.49948 1.22353 1.00985 0.86480 1.00820 1.19346 0.83295 0.88198 0.96709 0.95724 1.21807 1.00481 0.99012 0.97752 1.21099 0.94174 1.15045 1.24963 0.91725 1.24905 0.98667 0.94895 0.95466 1.69927 1.25618 1.19736 1.36929 0.86435 0.82370 0.78580 0.79951 1.19757 1.21023 1.20987 1.46264 1.06354 1.44062 1.20237 1.20853 1.01066 0.89504 0.86925 1.23177 1.01819 0.94236 1.01289 1.24018 0.97072 0.99046 0.99148 0.76750 0.88027 0.89303 0.91061 0.90351 0.92507 0.92710 0.93046 0.95291 0.89119 0.93052 0.95546 0.89227 0.96334 0.92809 0.87552 0.88772 0.86791 0.87584 0.87886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -1.94 19.25 29.55 0.57 -1.37 16 2 C -0.17 -1.81 12.23 -37.12 -0.45 -2.26 16 3 C -0.01 -0.07 5.17 -29.52 -0.15 -0.22 16 4 C 0.02 0.21 2.21 -91.77 -0.20 0.00 16 5 H 0.08 0.84 6.99 -51.93 -0.36 0.47 16 6 C -0.11 -1.20 5.28 -26.73 -0.14 -1.34 16 7 C -0.15 -1.55 9.13 37.16 0.34 -1.21 16 8 C 0.16 2.43 5.56 -154.03 -0.86 1.57 16 9 N -0.28 -5.53 12.18 32.99 0.40 -5.13 16 10 N -0.32 -7.17 10.23 30.31 0.31 -6.86 16 11 C 0.39 7.95 5.93 -318.88 -1.89 6.05 16 12 N -0.46 -9.99 4.66 -176.08 -0.82 -10.81 16 13 C 0.04 0.78 9.15 60.06 0.55 1.33 16 14 C 0.23 5.88 1.74 -68.86 -0.12 5.76 16 15 H 0.03 0.73 7.89 -51.93 -0.41 0.32 16 16 C -0.13 -3.43 8.80 37.16 0.33 -3.11 16 17 C -0.51 -13.72 7.94 -34.44 -0.27 -13.99 16 18 H 0.06 1.67 6.40 -52.49 -0.34 1.33 16 19 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 20 N -0.88 -25.28 11.32 55.43 0.63 -24.65 16 21 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 16 22 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 N -0.47 -7.64 2.79 -115.37 -0.32 -7.96 16 26 C 0.14 1.68 6.29 -5.19 -0.03 1.65 16 27 C -0.19 -1.94 9.12 -36.03 -0.33 -2.27 16 28 C -0.16 -1.47 12.66 29.01 0.37 -1.10 16 29 H 0.22 1.17 7.80 -54.08 -0.42 0.75 16 30 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.07 0.67 7.23 -51.92 -0.38 0.29 16 33 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.05 0.70 7.35 -51.93 -0.38 0.32 16 36 H 0.05 0.45 7.36 -51.93 -0.38 0.07 16 37 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.09 1.74 6.30 -51.93 -0.33 1.41 16 39 H 0.05 0.81 5.43 -51.93 -0.28 0.53 16 40 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.09 2.52 6.07 -51.93 -0.32 2.21 16 42 H 0.02 0.46 6.37 -51.93 -0.33 0.13 16 43 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 44 H 0.11 1.36 7.79 -51.93 -0.40 0.96 16 45 H 0.09 0.90 7.31 -51.93 -0.38 0.52 16 46 H 0.11 1.13 6.58 -52.49 -0.35 0.79 16 47 H 0.11 1.02 7.84 -52.49 -0.41 0.61 16 48 H 0.10 0.82 8.06 -52.48 -0.42 0.40 16 LS Contribution 387.74 15.07 5.84 5.84 Total: -1.00 -31.58 387.74 -8.93 -40.51 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -7.56 Total: 2.09 kcal Atomic # 6 Polarization: -6.48 SS G_CDS: -2.39 Total: -8.88 kcal Atomic # 7 Polarization: -55.61 SS G_CDS: 0.20 Total: -55.41 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.58 -8.93 -40.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340661851.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 198.427 kcal (2) G-P(sol) polarization free energy of solvation -31.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 166.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 157.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds