Wall clock time and date at job start Tue Mar 31 2020 11:35:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 C 1.52999 * 109.47087 * 179.05541 * 3 2 1 5 5 H 1.08998 * 109.47253 * 305.00235 * 4 3 2 6 6 C 1.52999 * 109.46965 * 65.00128 * 4 3 2 7 7 C 1.53004 * 109.47257 * 185.00017 * 6 4 3 8 8 C 1.50702 * 109.47443 * 184.99842 * 4 3 2 9 9 N 1.30289 * 126.34487 * 300.03033 * 8 4 3 10 10 N 1.28537 * 110.05064 * 179.97438 * 9 8 4 11 11 C 1.31212 * 109.85706 * 359.97438 * 10 9 8 12 12 N 1.38582 * 126.47044 * 179.97438 * 11 10 9 13 13 C 1.46892 * 111.00508 * 260.14126 * 12 11 10 14 14 C 1.46902 * 110.99656 * 24.09594 * 12 11 10 15 15 H 1.08998 * 109.47422 * 299.99378 * 14 12 11 16 16 C 1.53005 * 109.47304 * 60.00038 * 14 12 11 17 17 C 1.50708 * 109.46989 * 179.97438 * 14 12 11 18 18 H 1.07994 * 119.99684 * 359.97438 * 17 14 12 19 19 C 1.37878 * 119.99835 * 180.02562 * 17 14 12 20 20 N 1.31517 * 120.00231 * 359.97438 * 19 17 14 21 21 Si 1.86799 * 119.99835 * 180.02562 * 19 17 14 22 22 H 1.48504 * 109.47016 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.46995 * 119.99493 * 21 19 17 24 24 H 1.48500 * 109.46875 * 239.99702 * 21 19 17 25 25 N 1.36451 * 107.05622 * 359.76543 * 11 10 9 26 26 C 1.46500 * 127.13362 * 180.24036 * 25 11 10 27 27 C 1.50700 * 109.47061 * 268.34139 * 26 25 11 28 28 C 1.31001 * 119.99766 * 122.07945 * 27 26 25 29 29 H 4.44651 * 5.63389 * 180.02562 * 4 1 2 30 30 H 1.09000 * 109.47098 * 299.05729 * 3 2 1 31 31 H 1.09001 * 109.46912 * 59.05848 * 3 2 1 32 32 H 1.09008 * 109.47100 * 304.99790 * 6 4 3 33 33 H 1.09002 * 109.47325 * 64.99868 * 6 4 3 34 34 H 1.09002 * 109.47243 * 179.97438 * 7 6 4 35 35 H 1.08998 * 109.46970 * 299.99869 * 7 6 4 36 36 H 1.09005 * 109.46917 * 60.00192 * 7 6 4 37 37 H 1.08998 * 109.47258 * 65.66170 * 13 12 11 38 38 H 1.09004 * 109.47445 * 185.66029 * 13 12 11 39 39 H 1.09005 * 109.47353 * 305.66154 * 13 12 11 40 40 H 1.08998 * 109.47420 * 59.99339 * 16 14 12 41 41 H 1.08999 * 109.46990 * 180.02562 * 16 14 12 42 42 H 1.09001 * 109.46677 * 299.99768 * 16 14 12 43 43 H 0.96991 * 120.00173 * 179.97438 * 20 19 17 44 44 H 1.09000 * 109.47548 * 28.34735 * 26 25 11 45 45 H 1.09006 * 109.46896 * 148.34240 * 26 25 11 46 46 H 1.07995 * 120.00251 * 302.07432 * 27 26 25 47 47 H 1.08000 * 120.00324 * 359.97438 * 28 27 26 48 48 H 1.08004 * 119.99948 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1553 1.4432 -0.0238 5 1 2.7204 1.9681 -0.8743 6 6 2.7503 2.1484 1.2721 7 6 3.1497 3.6235 1.1964 8 6 4.6572 1.4437 -0.1476 9 7 5.5011 0.9074 0.6878 10 7 6.7051 1.0918 0.2773 11 6 6.6936 1.7606 -0.8515 12 7 7.7998 2.1457 -1.5921 13 6 8.1351 3.5542 -1.3442 14 6 8.9491 1.2741 -1.3136 15 1 9.2004 1.3315 -0.2545 16 6 8.5943 -0.1694 -1.6762 17 6 10.1302 1.7222 -2.1355 18 1 10.0362 2.5693 -2.7987 19 6 11.3303 1.0499 -2.0415 20 7 11.4445 0.0180 -1.2342 21 14 12.7944 1.6058 -3.0598 22 1 12.4086 2.7814 -3.8809 23 1 13.9129 1.9778 -2.1565 24 1 13.2255 0.4995 -3.9518 25 7 5.3866 2.0012 -1.1609 26 6 4.8719 2.7125 -2.3336 27 6 4.7123 4.1744 -2.0044 28 6 5.3408 5.0781 -2.7146 29 1 -1.0503 -0.0004 0.0002 30 1 3.0095 -0.4983 0.8983 31 1 3.0095 -0.5276 -0.8814 32 1 1.6712 2.0707 1.4062 33 1 3.2560 1.6779 2.1153 34 1 2.8607 4.1260 2.1195 35 1 4.2286 3.7013 1.0624 36 1 2.6438 4.0940 0.3532 37 1 8.4539 3.6751 -0.3089 38 1 8.9421 3.8584 -2.0108 39 1 7.2579 4.1744 -1.5290 40 1 8.3430 -0.2267 -2.7352 41 1 9.4469 -0.8161 -1.4691 42 1 7.7400 -0.4936 -1.0820 43 1 12.2886 -0.4552 -1.1684 44 1 5.5711 2.6008 -3.1623 45 1 3.9048 2.2959 -2.6157 46 1 4.0797 4.4771 -1.1831 47 1 5.9737 4.7755 -3.5357 48 1 5.2262 6.1259 -2.4789 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001340661851.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:09 Heat of formation + Delta-G solvation = 141.757325 kcal Electronic energy + Delta-G solvation = -27542.521333 eV Core-core repulsion = 24021.760085 eV Total energy + Delta-G solvation = -3520.761248 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.97799 -39.00470 -37.90088 -37.03111 -34.84962 -33.90944 -33.64351 -31.47005 -31.16353 -29.92270 -27.84263 -27.34003 -26.16675 -25.53642 -23.99019 -23.19952 -21.65840 -20.88011 -20.52857 -18.90752 -18.55806 -17.95700 -17.45977 -16.95563 -16.59427 -16.37843 -15.78360 -15.65321 -15.33194 -15.02102 -14.97138 -14.66579 -14.51911 -14.23205 -13.89826 -13.69315 -13.45769 -13.11387 -13.03262 -12.77154 -12.70742 -12.56160 -12.44837 -12.38449 -12.20970 -12.13877 -12.13444 -12.01616 -11.84201 -11.40357 -11.22103 -11.03375 -10.96418 -10.95743 -10.57894 -10.46632 -10.22774 -9.18076 -8.12669 -6.27726 0.81369 0.97426 1.44701 1.45299 1.57419 1.64604 1.86192 1.98464 2.02525 2.42323 3.01910 3.18248 3.23270 3.54055 3.68908 3.79702 3.87813 4.02263 4.07963 4.15204 4.21794 4.37131 4.45535 4.52952 4.55949 4.61283 4.64630 4.72369 4.80980 4.84967 4.92233 4.93580 4.96292 5.03210 5.05642 5.07930 5.16077 5.21151 5.25276 5.36610 5.43653 5.57811 5.60725 5.65627 5.69308 5.93505 6.01628 6.16778 6.63009 6.75844 6.83063 7.41254 7.88698 8.94639 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.018674 B = 0.003683 C = 0.003344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.068085 B = 7600.713422 C = 8370.332699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.214 4.214 3 C 0.000 4.000 4 C 0.022 3.978 5 H 0.111 0.889 6 C -0.107 4.107 7 C -0.147 4.147 8 C 0.186 3.814 9 N -0.321 5.321 10 N -0.365 5.365 11 C 0.367 3.633 12 N -0.458 5.458 13 C 0.046 3.954 14 C 0.241 3.759 15 H -0.024 1.024 16 C -0.114 4.114 17 C -0.524 4.524 18 H 0.075 0.925 19 C 0.011 3.989 20 N -0.920 5.920 21 Si 0.970 3.030 22 H -0.258 1.258 23 H -0.283 1.283 24 H -0.282 1.282 25 N -0.465 5.465 26 C 0.130 3.870 27 C -0.197 4.197 28 C -0.145 4.145 29 H 0.249 0.751 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.056 0.944 34 H 0.066 0.934 35 H 0.024 0.976 36 H 0.073 0.927 37 H 0.007 0.993 38 H 0.090 0.910 39 H 0.085 0.915 40 H 0.029 0.971 41 H 0.064 0.936 42 H 0.013 0.987 43 H 0.263 0.737 44 H 0.099 0.901 45 H 0.125 0.875 46 H 0.123 0.877 47 H 0.105 0.895 48 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.468 9.370 -2.740 24.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.214 4.214 3 C -0.038 4.038 4 C 0.001 3.999 5 H 0.129 0.871 6 C -0.146 4.146 7 C -0.204 4.204 8 C -0.083 4.083 9 N -0.160 5.160 10 N -0.209 5.209 11 C 0.010 3.990 12 N -0.183 5.183 13 C -0.101 4.101 14 C 0.135 3.865 15 H -0.006 1.006 16 C -0.173 4.173 17 C -0.562 4.562 18 H 0.093 0.907 19 C -0.188 4.188 20 N -0.559 5.559 21 Si 0.794 3.206 22 H -0.181 1.181 23 H -0.209 1.209 24 H -0.208 1.208 25 N -0.159 5.159 26 C 0.009 3.991 27 C -0.216 4.216 28 C -0.183 4.183 29 H 0.265 0.735 30 H 0.104 0.896 31 H 0.100 0.900 32 H 0.112 0.888 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.043 0.957 36 H 0.092 0.908 37 H 0.026 0.974 38 H 0.109 0.891 39 H 0.103 0.897 40 H 0.048 0.952 41 H 0.082 0.918 42 H 0.032 0.968 43 H 0.072 0.928 44 H 0.118 0.882 45 H 0.142 0.858 46 H 0.141 0.859 47 H 0.123 0.877 48 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -21.874 8.456 -2.001 23.537 hybrid contribution 1.055 0.349 -0.476 1.209 sum -20.819 8.805 -2.477 22.739 Atomic orbital electron populations 1.25644 0.96532 0.98507 0.99663 1.22882 0.94231 1.02394 1.01866 1.18528 0.85715 0.95708 1.03830 1.19665 0.81480 0.97008 1.01756 0.87130 1.21543 1.02230 0.95577 0.95219 1.21779 0.99791 0.95854 1.02952 1.24998 0.97377 0.98625 0.87256 1.73819 0.95574 1.21399 1.25171 1.74694 1.14819 1.21525 1.09830 1.22854 0.85724 0.99208 0.91251 1.59040 1.03533 1.05647 1.50083 1.22385 1.02484 0.85789 0.99449 1.18939 0.84993 0.88843 0.93699 1.00613 1.21575 0.99054 0.99089 0.97574 1.21394 0.94640 1.15258 1.24917 0.90732 1.25811 1.01653 0.94837 0.96513 1.70086 1.26341 1.21001 1.38512 0.85330 0.78426 0.78508 0.78287 1.18120 1.20947 1.20794 1.46449 1.04633 1.43671 1.21131 1.21247 1.02105 0.90693 0.85056 1.23120 1.03104 0.93049 1.02304 1.24230 0.95710 0.99993 0.98367 0.73492 0.89570 0.89960 0.88844 0.92470 0.91499 0.95688 0.90774 0.97399 0.89146 0.89667 0.95225 0.91777 0.96783 0.92830 0.88222 0.85756 0.85917 0.87716 0.85904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.65 19.25 74.32 1.43 -1.22 16 2 C -0.21 -3.97 12.23 31.13 0.38 -3.59 16 3 C 0.00 0.00 5.17 28.79 0.15 0.14 16 4 C 0.02 0.46 2.21 -11.54 -0.03 0.44 16 5 H 0.11 1.82 6.99 -2.39 -0.02 1.80 16 6 C -0.11 -2.11 5.28 30.60 0.16 -1.95 16 7 C -0.15 -2.71 9.13 71.98 0.66 -2.05 16 8 C 0.19 5.82 5.56 137.64 0.76 6.59 16 9 N -0.32 -13.21 12.18 -49.54 -0.60 -13.82 16 10 N -0.37 -17.52 10.23 -58.01 -0.59 -18.12 16 11 C 0.37 15.51 5.93 260.11 1.54 17.05 16 12 N -0.46 -20.23 4.66 -710.99 -3.31 -23.54 16 13 C 0.05 1.76 9.15 127.69 1.17 2.93 16 14 C 0.24 12.96 1.74 44.17 0.08 13.04 16 15 H -0.02 -1.50 7.89 -2.39 -0.02 -1.51 16 16 C -0.11 -6.24 8.80 71.98 0.63 -5.60 16 17 C -0.52 -28.46 7.94 25.60 0.20 -28.25 16 18 H 0.07 3.82 6.40 -2.91 -0.02 3.81 16 19 C 0.01 0.61 5.30 84.65 0.45 1.06 16 20 N -0.92 -54.51 11.32 21.45 0.24 -54.26 16 21 Si 0.97 43.01 29.54 68.60 2.03 45.03 16 22 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 23 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 24 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 25 N -0.47 -14.79 2.79 -518.91 -1.45 -16.24 16 26 C 0.13 2.86 6.29 85.63 0.54 3.40 16 27 C -0.20 -3.55 9.12 25.65 0.23 -3.31 16 28 C -0.15 -2.30 12.66 67.78 0.86 -1.44 16 29 H 0.25 1.49 7.80 -4.40 -0.03 1.46 16 30 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.08 1.83 8.14 -2.39 -0.02 1.82 16 32 H 0.09 1.47 7.23 -2.38 -0.02 1.45 16 33 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.02 0.60 7.35 -2.39 -0.02 0.59 16 36 H 0.07 1.03 7.36 -2.38 -0.02 1.01 16 37 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 38 H 0.09 3.43 6.30 -2.39 -0.02 3.42 16 39 H 0.08 2.62 5.43 -2.38 -0.01 2.60 16 40 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.06 3.80 6.07 -2.39 -0.01 3.78 16 42 H 0.01 0.73 6.37 -2.39 -0.02 0.71 16 43 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 44 H 0.10 2.38 7.79 -2.39 -0.02 2.36 16 45 H 0.12 1.97 7.31 -2.38 -0.02 1.95 16 46 H 0.12 2.02 6.58 -2.91 -0.02 2.01 16 47 H 0.10 1.72 7.84 -2.91 -0.02 1.70 16 48 H 0.12 1.49 8.06 -2.91 -0.02 1.47 16 Total: -1.00 -72.94 387.74 6.47 -66.48 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: 0.93 Total: 17.24 kcal Atomic # 6 Polarization: -12.00 SS G_CDS: 9.22 Total: -2.77 kcal Atomic # 7 Polarization: -120.26 SS G_CDS: -5.71 Total: -125.98 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.03 kcal Total: -72.94 6.47 -66.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340661851.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 208.233 kcal (2) G-P(sol) polarization free energy of solvation -72.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 141.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds