Wall clock time and date at job start Tue Mar 31 2020 11:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.52999 * 109.47480 * 42.58734 * 3 2 1 5 5 H 1.08999 * 109.47008 * 305.00214 * 4 3 2 6 6 C 1.52999 * 109.46960 * 64.99774 * 4 3 2 7 7 C 1.53000 * 109.47109 * 185.00149 * 6 4 3 8 8 C 1.50696 * 109.47161 * 185.00046 * 4 3 2 9 9 N 1.30301 * 126.34687 * 300.01905 * 8 4 3 10 10 N 1.28525 * 110.05349 * 179.97438 * 9 8 4 11 11 C 1.31216 * 109.86291 * 0.02562 * 10 9 8 12 12 N 1.38578 * 126.47666 * 179.97438 * 11 10 9 13 13 C 1.46902 * 111.00129 * 251.56289 * 12 11 10 14 14 C 1.46907 * 110.99893 * 15.51317 * 12 11 10 15 15 H 1.08999 * 109.47070 * 55.00023 * 14 12 11 16 16 C 1.52995 * 109.46918 * 295.00339 * 14 12 11 17 17 C 1.50700 * 109.47215 * 175.00014 * 14 12 11 18 18 H 1.08006 * 119.99650 * 0.02562 * 17 14 12 19 19 C 1.37873 * 119.99982 * 179.97438 * 17 14 12 20 20 N 1.31513 * 119.99942 * 0.02562 * 19 17 14 21 21 Si 1.86801 * 119.99926 * 180.02562 * 19 17 14 22 22 H 1.48506 * 109.46792 * 60.00232 * 21 19 17 23 23 H 1.48501 * 109.47259 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47401 * 300.00500 * 21 19 17 25 25 N 1.36458 * 107.04967 * 359.75152 * 11 10 9 26 26 C 1.46500 * 127.13456 * 180.24715 * 25 11 10 27 27 C 1.50702 * 109.47073 * 264.51145 * 26 25 11 28 28 C 1.30999 * 119.99766 * 126.14610 * 27 26 25 29 29 H 4.44646 * 5.63369 * 179.97438 * 4 1 2 30 30 H 1.09007 * 109.47009 * 162.58840 * 3 2 1 31 31 H 1.09009 * 109.47389 * 282.58676 * 3 2 1 32 32 H 1.09002 * 109.47294 * 305.00102 * 6 4 3 33 33 H 1.08997 * 109.46940 * 65.00075 * 6 4 3 34 34 H 1.08995 * 109.47112 * 180.02562 * 7 6 4 35 35 H 1.09002 * 109.47004 * 300.00131 * 7 6 4 36 36 H 1.08997 * 109.47280 * 60.00134 * 7 6 4 37 37 H 1.09005 * 109.46846 * 53.95783 * 13 12 11 38 38 H 1.08992 * 109.47038 * 173.96380 * 13 12 11 39 39 H 1.09002 * 109.46514 * 293.96575 * 13 12 11 40 40 H 1.08999 * 109.46991 * 299.99732 * 16 14 12 41 41 H 1.09001 * 109.47289 * 59.99954 * 16 14 12 42 42 H 1.09005 * 109.47038 * 179.97438 * 16 14 12 43 43 H 0.97002 * 119.99910 * 180.02562 * 20 19 17 44 44 H 1.09004 * 109.47311 * 24.51248 * 26 25 11 45 45 H 1.09000 * 109.47360 * 144.51177 * 26 25 11 46 46 H 1.08002 * 119.99868 * 306.14720 * 27 26 25 47 47 H 1.08007 * 119.99747 * 179.97438 * 28 27 26 48 48 H 1.07994 * 120.00616 * 359.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1565 -1.0611 -0.9761 5 1 2.7223 -2.0278 -0.7211 6 6 2.7516 -0.6802 -2.4015 7 6 3.1522 -1.8015 -3.3624 8 6 4.6584 -1.1455 -0.8861 9 7 5.5017 -0.1806 -1.1222 10 7 6.7059 -0.5959 -0.9510 11 6 6.6955 -1.8586 -0.5942 12 7 7.8022 -2.6470 -0.3223 13 6 8.0175 -3.6371 -1.3859 14 6 9.0005 -1.8210 -0.1216 15 1 8.8076 -1.0844 0.6583 16 6 9.3490 -1.1026 -1.4267 17 6 10.1530 -2.6998 0.2914 18 1 10.0097 -3.7654 0.3941 19 6 11.3904 -2.1436 0.5370 20 7 11.5648 -0.8462 0.4114 21 14 12.8192 -3.2330 1.0482 22 1 13.0814 -4.2365 -0.0146 23 1 14.0307 -2.3983 1.2499 24 1 12.4814 -3.9305 2.3150 25 7 5.3887 -2.2473 -0.5364 26 6 4.8749 -3.5714 -0.1771 27 6 4.6278 -4.3713 -1.4301 28 6 5.1670 -5.5574 -1.5670 29 1 -1.0498 -0.0004 -0.0001 30 1 3.0089 0.9815 -0.3075 31 1 3.0095 -0.2231 1.0030 32 1 1.6725 -0.5324 -2.4455 33 1 3.2567 0.2420 -2.6886 34 1 2.8642 -1.5299 -4.3779 35 1 4.2313 -1.9493 -3.3184 36 1 2.6472 -2.7237 -3.0754 37 1 8.0718 -3.1296 -2.3491 38 1 8.9504 -4.1700 -1.2028 39 1 7.1896 -4.3461 -1.3950 40 1 9.5418 -1.8392 -2.2066 41 1 8.5153 -0.4670 -1.7253 42 1 10.2378 -0.4894 -1.2777 43 1 12.4355 -0.4550 0.5839 44 1 5.6054 -4.0879 0.4456 45 1 3.9409 -3.4614 0.3739 46 1 4.0061 -3.9668 -2.2152 47 1 4.9895 -6.1309 -2.4648 48 1 5.7889 -5.9617 -0.7821 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340661855.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:12 Heat of formation + Delta-G solvation = 163.267126 kcal Electronic energy + Delta-G solvation = -27576.534316 eV Core-core repulsion = 24056.705803 eV Total energy + Delta-G solvation = -3519.828513 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.55471 -37.62427 -36.78486 -35.98625 -33.16683 -32.82787 -32.50842 -30.35150 -28.88977 -28.50884 -26.71129 -25.38662 -25.13623 -24.45794 -22.73808 -21.51234 -20.46840 -19.72752 -19.21149 -18.16230 -16.94144 -16.26100 -15.96448 -15.56276 -15.37965 -14.91633 -14.55118 -14.44026 -14.15010 -13.85849 -13.71882 -13.67787 -13.06048 -12.90194 -12.60263 -12.36001 -12.23210 -11.75005 -11.60694 -11.52500 -11.43383 -11.21724 -11.08776 -10.94878 -10.89451 -10.75265 -10.47436 -10.28861 -10.21222 -10.13182 -10.05401 -9.77444 -9.70444 -9.60223 -8.83692 -8.73744 -8.38571 -7.41898 -6.01850 -4.09262 1.83430 2.21623 2.63831 2.71029 2.87375 3.30214 3.35552 3.36859 3.41928 4.11677 4.34944 4.47464 4.53655 4.66860 4.71181 4.77841 4.92074 4.97693 5.04293 5.26199 5.29149 5.41840 5.43187 5.50117 5.63254 5.69756 5.71257 5.81950 5.84316 5.86772 5.94281 6.08206 6.11118 6.14561 6.30076 6.32963 6.33974 6.49566 6.54905 6.86593 7.03964 7.19507 7.36271 7.46665 7.54029 7.70159 7.76501 7.99660 8.33683 8.50336 8.92134 9.38256 9.55098 11.04216 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.018810 B = 0.003635 C = 0.003348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.203718 B = 7700.712160 C = 8362.033567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.173 4.173 3 C -0.006 4.006 4 C 0.018 3.982 5 H 0.084 0.916 6 C -0.112 4.112 7 C -0.151 4.151 8 C 0.155 3.845 9 N -0.283 5.283 10 N -0.312 5.312 11 C 0.386 3.614 12 N -0.458 5.458 13 C 0.033 3.967 14 C 0.231 3.769 15 H 0.047 0.953 16 C -0.179 4.179 17 C -0.515 4.515 18 H 0.062 0.938 19 C 0.064 3.936 20 N -0.884 5.884 21 Si 0.899 3.101 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.277 1.277 25 N -0.478 5.478 26 C 0.139 3.861 27 C -0.186 4.186 28 C -0.159 4.159 29 H 0.215 0.785 30 H 0.102 0.898 31 H 0.089 0.911 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.056 0.944 35 H 0.054 0.946 36 H 0.051 0.949 37 H 0.029 0.971 38 H 0.093 0.907 39 H 0.053 0.947 40 H 0.019 0.981 41 H 0.053 0.947 42 H 0.087 0.913 43 H 0.263 0.737 44 H 0.106 0.894 45 H 0.095 0.905 46 H 0.116 0.884 47 H 0.104 0.896 48 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.054 -5.967 -3.977 21.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.173 4.173 3 C -0.044 4.044 4 C -0.003 4.003 5 H 0.102 0.898 6 C -0.151 4.151 7 C -0.208 4.208 8 C -0.113 4.113 9 N -0.122 5.122 10 N -0.156 5.156 11 C 0.030 3.970 12 N -0.182 5.182 13 C -0.114 4.114 14 C 0.126 3.874 15 H 0.065 0.935 16 C -0.238 4.238 17 C -0.553 4.553 18 H 0.081 0.919 19 C -0.139 4.139 20 N -0.522 5.522 21 Si 0.726 3.274 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.202 1.202 25 N -0.173 5.173 26 C 0.015 3.985 27 C -0.205 4.205 28 C -0.197 4.197 29 H 0.232 0.768 30 H 0.120 0.880 31 H 0.107 0.893 32 H 0.089 0.911 33 H 0.097 0.903 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.047 0.953 38 H 0.112 0.888 39 H 0.071 0.929 40 H 0.038 0.962 41 H 0.072 0.928 42 H 0.105 0.895 43 H 0.073 0.927 44 H 0.125 0.875 45 H 0.113 0.887 46 H 0.134 0.866 47 H 0.122 0.878 48 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -19.390 -4.713 -3.854 20.324 hybrid contribution 0.399 -1.567 0.059 1.618 sum -18.992 -6.280 -3.795 20.360 Atomic orbital electron populations 1.24825 0.95832 1.01273 1.01492 1.23003 0.94252 1.00161 0.99921 1.18746 0.84448 1.00910 1.00246 1.19400 0.84743 0.99540 0.96607 0.89819 1.21574 1.01194 0.99965 0.92334 1.21820 1.01661 0.98161 0.99204 1.24146 0.95934 0.84369 1.06831 1.73924 0.96037 1.24518 1.17697 1.74905 1.12126 1.08145 1.20409 1.23217 0.84231 0.91666 0.97849 1.59305 1.03190 1.15888 1.39828 1.22454 1.02838 0.94383 0.91745 1.19332 0.82361 0.90855 0.94816 0.93502 1.22552 1.03410 1.00449 0.97382 1.20995 0.93424 0.93974 1.46936 0.91940 1.24887 0.98569 0.95052 0.95354 1.69915 1.23824 1.10054 1.48393 0.86558 0.81506 0.80223 0.79064 1.20313 1.21271 1.20234 1.46218 1.06234 1.11000 1.53859 1.20870 1.01094 0.80620 0.95869 1.23250 1.01817 0.96669 0.98725 1.23985 0.97663 0.96571 1.01454 0.76768 0.88024 0.89313 0.91073 0.90339 0.92490 0.92669 0.93030 0.95268 0.88802 0.92871 0.96232 0.92798 0.89473 0.92738 0.87531 0.88704 0.86581 0.87816 0.87670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -1.92 19.25 29.55 0.57 -1.36 16 2 C -0.17 -1.80 12.23 -37.12 -0.45 -2.25 16 3 C -0.01 -0.07 5.17 -29.52 -0.15 -0.22 16 4 C 0.02 0.21 2.21 -91.77 -0.20 0.00 16 5 H 0.08 0.83 7.09 -51.93 -0.37 0.46 16 6 C -0.11 -1.19 5.28 -26.73 -0.14 -1.33 16 7 C -0.15 -1.56 8.94 37.16 0.33 -1.23 16 8 C 0.15 2.40 5.56 -154.02 -0.86 1.54 16 9 N -0.28 -5.52 12.18 32.99 0.40 -5.12 16 10 N -0.31 -7.01 8.94 30.31 0.27 -6.74 16 11 C 0.39 7.89 6.65 -318.87 -2.12 5.77 16 12 N -0.46 -9.87 4.74 -176.08 -0.83 -10.71 16 13 C 0.03 0.62 8.61 60.07 0.52 1.14 16 14 C 0.23 5.92 2.09 -68.86 -0.14 5.78 16 15 H 0.05 1.38 8.11 -51.93 -0.42 0.96 16 16 C -0.18 -4.59 8.28 37.15 0.31 -4.28 16 17 C -0.51 -13.79 7.80 -34.44 -0.27 -14.05 16 18 H 0.06 1.62 6.82 -52.48 -0.36 1.26 16 19 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 20 N -0.88 -25.35 11.32 55.43 0.63 -24.72 16 21 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 16 22 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 23 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 25 N -0.48 -7.63 2.79 -115.37 -0.32 -7.95 16 26 C 0.14 1.65 5.67 -5.19 -0.03 1.62 16 27 C -0.19 -1.91 9.27 -36.02 -0.33 -2.24 16 28 C -0.16 -1.46 12.49 29.01 0.36 -1.10 16 29 H 0.22 1.16 7.80 -54.10 -0.42 0.74 16 30 H 0.10 1.18 8.14 -51.92 -0.42 0.76 16 31 H 0.09 0.99 8.14 -51.92 -0.42 0.56 16 32 H 0.07 0.66 7.23 -51.93 -0.38 0.29 16 33 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.05 0.71 7.26 -51.93 -0.38 0.33 16 36 H 0.05 0.45 7.12 -51.93 -0.37 0.08 16 37 H 0.03 0.57 6.83 -51.93 -0.35 0.22 16 38 H 0.09 1.84 6.28 -51.93 -0.33 1.52 16 39 H 0.05 0.82 4.70 -51.93 -0.24 0.57 16 40 H 0.02 0.47 6.62 -51.93 -0.34 0.13 16 41 H 0.05 1.37 5.36 -51.93 -0.28 1.10 16 42 H 0.09 2.45 6.07 -51.93 -0.32 2.14 16 43 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 44 H 0.11 1.33 7.76 -51.93 -0.40 0.93 16 45 H 0.09 0.90 7.49 -51.93 -0.39 0.51 16 46 H 0.12 1.15 5.98 -52.49 -0.31 0.84 16 47 H 0.10 0.80 8.06 -52.48 -0.42 0.38 16 48 H 0.11 0.95 7.74 -52.49 -0.41 0.54 16 LS Contribution 380.83 15.07 5.74 5.74 Total: -1.00 -31.38 380.83 -9.16 -40.54 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -7.31 Total: 3.58 kcal Atomic # 6 Polarization: -7.84 SS G_CDS: -2.71 Total: -10.55 kcal Atomic # 7 Polarization: -55.38 SS G_CDS: 0.14 Total: -55.24 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.38 -9.16 -40.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340661855.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 203.809 kcal (2) G-P(sol) polarization free energy of solvation -31.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 172.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 163.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds