Wall clock time and date at job start Tue Mar 31 2020 11:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.52999 * 109.47480 * 42.58734 * 3 2 1 5 5 H 1.08999 * 109.47008 * 305.00214 * 4 3 2 6 6 C 1.52999 * 109.46960 * 64.99774 * 4 3 2 7 7 C 1.53000 * 109.47109 * 185.00149 * 6 4 3 8 8 C 1.50696 * 109.47161 * 185.00046 * 4 3 2 9 9 N 1.30301 * 126.34687 * 300.01905 * 8 4 3 10 10 N 1.28525 * 110.05349 * 179.97438 * 9 8 4 11 11 C 1.31216 * 109.86291 * 0.02562 * 10 9 8 12 12 N 1.38578 * 126.47666 * 179.97438 * 11 10 9 13 13 C 1.46902 * 111.00129 * 251.56289 * 12 11 10 14 14 C 1.46907 * 110.99893 * 15.51317 * 12 11 10 15 15 H 1.08999 * 109.47070 * 55.00023 * 14 12 11 16 16 C 1.52995 * 109.46918 * 295.00339 * 14 12 11 17 17 C 1.50700 * 109.47215 * 175.00014 * 14 12 11 18 18 H 1.08006 * 119.99650 * 0.02562 * 17 14 12 19 19 C 1.37873 * 119.99982 * 179.97438 * 17 14 12 20 20 N 1.31513 * 119.99942 * 0.02562 * 19 17 14 21 21 Si 1.86801 * 119.99926 * 180.02562 * 19 17 14 22 22 H 1.48506 * 109.46792 * 60.00232 * 21 19 17 23 23 H 1.48501 * 109.47259 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47401 * 300.00500 * 21 19 17 25 25 N 1.36458 * 107.04967 * 359.75152 * 11 10 9 26 26 C 1.46500 * 127.13456 * 180.24715 * 25 11 10 27 27 C 1.50702 * 109.47073 * 264.51145 * 26 25 11 28 28 C 1.30999 * 119.99766 * 126.14610 * 27 26 25 29 29 H 4.44646 * 5.63369 * 179.97438 * 4 1 2 30 30 H 1.09007 * 109.47009 * 162.58840 * 3 2 1 31 31 H 1.09009 * 109.47389 * 282.58676 * 3 2 1 32 32 H 1.09002 * 109.47294 * 305.00102 * 6 4 3 33 33 H 1.08997 * 109.46940 * 65.00075 * 6 4 3 34 34 H 1.08995 * 109.47112 * 180.02562 * 7 6 4 35 35 H 1.09002 * 109.47004 * 300.00131 * 7 6 4 36 36 H 1.08997 * 109.47280 * 60.00134 * 7 6 4 37 37 H 1.09005 * 109.46846 * 53.95783 * 13 12 11 38 38 H 1.08992 * 109.47038 * 173.96380 * 13 12 11 39 39 H 1.09002 * 109.46514 * 293.96575 * 13 12 11 40 40 H 1.08999 * 109.46991 * 299.99732 * 16 14 12 41 41 H 1.09001 * 109.47289 * 59.99954 * 16 14 12 42 42 H 1.09005 * 109.47038 * 179.97438 * 16 14 12 43 43 H 0.97002 * 119.99910 * 180.02562 * 20 19 17 44 44 H 1.09004 * 109.47311 * 24.51248 * 26 25 11 45 45 H 1.09000 * 109.47360 * 144.51177 * 26 25 11 46 46 H 1.08002 * 119.99868 * 306.14720 * 27 26 25 47 47 H 1.08007 * 119.99747 * 179.97438 * 28 27 26 48 48 H 1.07994 * 120.00616 * 359.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1565 -1.0611 -0.9761 5 1 2.7223 -2.0278 -0.7211 6 6 2.7516 -0.6802 -2.4015 7 6 3.1522 -1.8015 -3.3624 8 6 4.6584 -1.1455 -0.8861 9 7 5.5017 -0.1806 -1.1222 10 7 6.7059 -0.5959 -0.9510 11 6 6.6955 -1.8586 -0.5942 12 7 7.8022 -2.6470 -0.3223 13 6 8.0175 -3.6371 -1.3859 14 6 9.0005 -1.8210 -0.1216 15 1 8.8076 -1.0844 0.6583 16 6 9.3490 -1.1026 -1.4267 17 6 10.1530 -2.6998 0.2914 18 1 10.0097 -3.7654 0.3941 19 6 11.3904 -2.1436 0.5370 20 7 11.5648 -0.8462 0.4114 21 14 12.8192 -3.2330 1.0482 22 1 13.0814 -4.2365 -0.0146 23 1 14.0307 -2.3983 1.2499 24 1 12.4814 -3.9305 2.3150 25 7 5.3887 -2.2473 -0.5364 26 6 4.8749 -3.5714 -0.1771 27 6 4.6278 -4.3713 -1.4301 28 6 5.1670 -5.5574 -1.5670 29 1 -1.0498 -0.0004 -0.0001 30 1 3.0089 0.9815 -0.3075 31 1 3.0095 -0.2231 1.0030 32 1 1.6725 -0.5324 -2.4455 33 1 3.2567 0.2420 -2.6886 34 1 2.8642 -1.5299 -4.3779 35 1 4.2313 -1.9493 -3.3184 36 1 2.6472 -2.7237 -3.0754 37 1 8.0718 -3.1296 -2.3491 38 1 8.9504 -4.1700 -1.2028 39 1 7.1896 -4.3461 -1.3950 40 1 9.5418 -1.8392 -2.2066 41 1 8.5153 -0.4670 -1.7253 42 1 10.2378 -0.4894 -1.2777 43 1 12.4355 -0.4550 0.5839 44 1 5.6054 -4.0879 0.4456 45 1 3.9409 -3.4614 0.3739 46 1 4.0061 -3.9668 -2.2152 47 1 4.9895 -6.1309 -2.4648 48 1 5.7889 -5.9617 -0.7821 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001340661855.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:12 Heat of formation + Delta-G solvation = 147.537129 kcal Electronic energy + Delta-G solvation = -27577.216420 eV Core-core repulsion = 24056.705803 eV Total energy + Delta-G solvation = -3520.510617 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.97564 -39.18937 -37.93656 -37.05969 -34.79432 -33.90329 -33.68230 -31.45156 -30.69562 -29.87225 -27.77638 -27.25492 -26.85357 -25.53288 -23.87487 -23.17725 -21.54432 -20.94010 -20.57264 -18.90496 -18.41160 -17.95734 -17.28103 -17.13983 -16.59031 -16.46947 -15.75191 -15.45723 -15.38783 -15.19017 -14.78160 -14.68429 -14.59138 -14.20298 -13.84778 -13.65264 -13.43375 -13.19195 -13.03868 -12.92880 -12.69176 -12.64827 -12.49611 -12.37841 -12.24958 -12.13806 -12.00347 -11.91569 -11.81203 -11.35694 -11.18368 -11.00151 -10.95679 -10.80616 -10.49012 -10.44691 -10.34962 -9.08360 -8.10900 -6.26315 0.82134 0.99028 1.44690 1.47436 1.54674 1.63080 1.87239 1.98571 2.02929 2.42858 3.05091 3.18020 3.23053 3.53956 3.68257 3.79501 3.87784 4.02493 4.07879 4.13593 4.21878 4.36087 4.45525 4.52302 4.54484 4.60578 4.64448 4.67660 4.75319 4.90167 4.93260 4.97060 5.00262 5.06603 5.08208 5.16064 5.20999 5.25444 5.31461 5.36451 5.48822 5.58720 5.62967 5.64537 5.69193 5.88299 6.09248 6.24595 6.64119 6.75996 6.83157 7.42494 7.91216 8.95369 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.018810 B = 0.003635 C = 0.003348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.203718 B = 7700.712160 C = 8362.033567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.213 4.213 3 C 0.000 4.000 4 C 0.022 3.978 5 H 0.110 0.890 6 C -0.107 4.107 7 C -0.147 4.147 8 C 0.186 3.814 9 N -0.323 5.323 10 N -0.359 5.359 11 C 0.364 3.636 12 N -0.457 5.457 13 C 0.040 3.960 14 C 0.244 3.756 15 H -0.002 1.002 16 C -0.160 4.160 17 C -0.525 4.525 18 H 0.072 0.928 19 C 0.012 3.988 20 N -0.920 5.920 21 Si 0.969 3.031 22 H -0.265 1.265 23 H -0.288 1.288 24 H -0.269 1.269 25 N -0.468 5.468 26 C 0.129 3.871 27 C -0.198 4.198 28 C -0.148 4.148 29 H 0.248 0.752 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.057 0.943 34 H 0.066 0.934 35 H 0.024 0.976 36 H 0.073 0.927 37 H 0.015 0.985 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.023 0.977 41 H 0.051 0.949 42 H 0.058 0.942 43 H 0.262 0.738 44 H 0.101 0.899 45 H 0.124 0.876 46 H 0.123 0.877 47 H 0.123 0.877 48 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.775 -8.718 -4.193 24.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.213 4.213 3 C -0.038 4.038 4 C 0.001 3.999 5 H 0.128 0.872 6 C -0.146 4.146 7 C -0.204 4.204 8 C -0.083 4.083 9 N -0.161 5.161 10 N -0.203 5.203 11 C 0.007 3.993 12 N -0.181 5.181 13 C -0.107 4.107 14 C 0.138 3.862 15 H 0.016 0.984 16 C -0.220 4.220 17 C -0.563 4.563 18 H 0.090 0.910 19 C -0.187 4.187 20 N -0.558 5.558 21 Si 0.793 3.207 22 H -0.190 1.190 23 H -0.214 1.214 24 H -0.194 1.194 25 N -0.162 5.162 26 C 0.008 3.992 27 C -0.217 4.217 28 C -0.185 4.185 29 H 0.265 0.735 30 H 0.105 0.895 31 H 0.101 0.899 32 H 0.111 0.889 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.043 0.957 36 H 0.092 0.908 37 H 0.034 0.966 38 H 0.104 0.896 39 H 0.108 0.892 40 H 0.042 0.958 41 H 0.069 0.931 42 H 0.077 0.923 43 H 0.071 0.929 44 H 0.119 0.881 45 H 0.142 0.858 46 H 0.141 0.859 47 H 0.141 0.859 48 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -22.149 -7.493 -4.075 23.735 hybrid contribution 1.034 -0.700 0.117 1.254 sum -21.115 -8.193 -3.958 22.992 Atomic orbital electron populations 1.25632 0.96531 0.98987 0.99249 1.22894 0.94249 1.02234 1.01969 1.18533 0.85675 0.99927 0.99645 1.19652 0.81540 1.01137 0.97553 0.87204 1.21540 1.02213 0.99213 0.91596 1.21793 0.99799 0.99006 0.99819 1.24956 0.97313 0.83112 1.02921 1.73829 0.95771 1.26263 1.20230 1.74724 1.14139 1.09629 1.21802 1.23043 0.85436 0.91492 0.99330 1.59172 1.02156 1.15564 1.41216 1.22480 1.03975 0.94065 0.90205 1.18890 0.84062 0.90297 0.92993 0.98411 1.22338 1.01874 1.00003 0.97785 1.21304 0.93880 0.94451 1.46697 0.91022 1.25792 1.01424 0.96287 0.95246 1.70087 1.24363 1.11998 1.49388 0.85452 0.77726 0.78399 0.79083 1.19006 1.21403 1.19384 1.46399 1.04494 1.12584 1.52756 1.21265 1.02023 0.78706 0.97222 1.23172 1.03215 0.97033 0.98249 1.24213 0.96220 0.96150 1.01957 0.73529 0.89545 0.89919 0.88869 0.92443 0.91500 0.95660 0.90781 0.96601 0.89575 0.89230 0.95793 0.93059 0.92331 0.92877 0.88083 0.85793 0.85943 0.85900 0.87455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.65 19.25 74.32 1.43 -1.21 16 2 C -0.21 -3.94 12.23 31.12 0.38 -3.56 16 3 C 0.00 0.00 5.17 28.79 0.15 0.14 16 4 C 0.02 0.47 2.21 -11.54 -0.03 0.44 16 5 H 0.11 1.80 7.09 -2.39 -0.02 1.79 16 6 C -0.11 -2.11 5.28 30.59 0.16 -1.95 16 7 C -0.15 -2.72 8.94 71.98 0.64 -2.08 16 8 C 0.19 5.77 5.56 137.64 0.76 6.54 16 9 N -0.32 -13.19 12.18 -49.54 -0.60 -13.79 16 10 N -0.36 -17.05 8.94 -58.00 -0.52 -17.56 16 11 C 0.36 15.36 6.65 260.11 1.73 17.09 16 12 N -0.46 -20.21 4.74 -710.99 -3.37 -23.58 16 13 C 0.04 1.48 8.61 127.69 1.10 2.58 16 14 C 0.24 13.11 2.09 44.17 0.09 13.20 16 15 H 0.00 -0.13 8.11 -2.39 -0.02 -0.15 16 16 C -0.16 -8.71 8.28 71.98 0.60 -8.11 16 17 C -0.53 -28.71 7.80 25.60 0.20 -28.51 16 18 H 0.07 3.71 6.82 -2.91 -0.02 3.69 16 19 C 0.01 0.66 5.30 84.65 0.45 1.10 16 20 N -0.92 -54.72 11.32 21.45 0.24 -54.47 16 21 Si 0.97 43.22 29.54 68.60 2.03 45.25 16 22 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 23 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 24 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 25 N -0.47 -14.79 2.79 -518.91 -1.45 -16.24 16 26 C 0.13 2.80 5.67 85.63 0.49 3.28 16 27 C -0.20 -3.50 9.27 25.65 0.24 -3.26 16 28 C -0.15 -2.22 12.49 67.78 0.85 -1.38 16 29 H 0.25 1.48 7.80 -4.43 -0.03 1.45 16 30 H 0.09 2.08 8.14 -2.38 -0.02 2.06 16 31 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 32 H 0.09 1.47 7.23 -2.39 -0.02 1.45 16 33 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.02 0.61 7.26 -2.39 -0.02 0.60 16 36 H 0.07 1.04 7.12 -2.39 -0.02 1.02 16 37 H 0.02 0.62 6.83 -2.38 -0.02 0.60 16 38 H 0.09 3.35 6.28 -2.39 -0.02 3.33 16 39 H 0.09 2.63 4.70 -2.39 -0.01 2.62 16 40 H 0.02 1.21 6.62 -2.39 -0.02 1.19 16 41 H 0.05 2.79 5.36 -2.39 -0.01 2.78 16 42 H 0.06 3.49 6.07 -2.38 -0.01 3.47 16 43 H 0.26 14.85 8.31 -92.71 -0.77 14.07 16 44 H 0.10 2.35 7.76 -2.39 -0.02 2.33 16 45 H 0.12 1.95 7.49 -2.39 -0.02 1.93 16 46 H 0.12 2.04 5.98 -2.91 -0.02 2.02 16 47 H 0.12 1.42 8.06 -2.91 -0.02 1.40 16 48 H 0.11 1.60 7.74 -2.91 -0.02 1.57 16 Total: -1.00 -72.67 380.83 6.51 -66.15 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: 0.95 Total: 19.92 kcal Atomic # 6 Polarization: -14.92 SS G_CDS: 9.24 Total: -5.67 kcal Atomic # 7 Polarization: -119.95 SS G_CDS: -5.70 Total: -125.65 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -72.67 6.51 -66.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340661855.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 213.690 kcal (2) G-P(sol) polarization free energy of solvation -72.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 147.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds