Wall clock time and date at job start Tue Mar 31 2020 11:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50699 * 119.99731 * 2 1 4 4 C 1.50702 * 119.99898 * 180.02562 * 2 1 3 5 5 N 1.46505 * 109.46843 * 95.94572 * 4 2 1 6 6 C 1.36745 * 127.13110 * 264.96029 * 5 4 2 7 7 C 1.50703 * 126.35063 * 359.73448 * 6 5 4 8 8 C 1.53000 * 109.46564 * 93.20200 * 7 6 5 9 9 C 1.50703 * 109.46564 * 179.97438 * 8 7 6 10 10 H 1.08001 * 120.00295 * 0.02562 * 9 8 7 11 11 C 1.37880 * 119.99681 * 179.97438 * 9 8 7 12 12 N 1.31508 * 120.00365 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 119.99804 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.46921 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.46898 * 120.00626 * 13 11 9 16 16 H 1.48502 * 109.47255 * 240.00250 * 13 11 9 17 17 N 1.30292 * 107.30148 * 180.02562 * 6 5 4 18 18 N 1.28529 * 110.05740 * 359.97438 * 17 6 5 19 19 C 1.31215 * 109.85800 * 0.02562 * 18 17 6 20 20 N 1.38583 * 126.47602 * 179.97438 * 19 18 17 21 21 C 1.47166 * 111.00204 * 261.62174 * 20 19 18 22 22 C 1.52098 * 109.49942 * 198.66651 * 21 20 19 23 23 C 1.52377 * 110.31701 * 306.93000 * 22 21 20 24 24 H 1.09004 * 114.41772 * 164.07880 * 23 22 21 25 25 C 1.50902 * 119.18367 * 308.97619 * 23 22 21 26 26 C 1.52404 * 118.99336 * 19.80437 * 23 22 21 27 27 H 1.09007 * 117.38577 * 143.73172 * 26 23 22 28 28 C 1.46746 * 110.99686 * 24.70156 * 20 19 18 29 29 H 1.08000 * 119.99951 * 4.14584 * 1 2 3 30 30 H 1.08000 * 120.00085 * 184.14541 * 1 2 3 31 31 H 1.09005 * 109.46619 * 174.93002 * 3 2 1 32 32 H 1.08993 * 109.47741 * 294.93146 * 3 2 1 33 33 H 1.09004 * 109.46810 * 54.93627 * 3 2 1 34 34 H 1.08996 * 109.47417 * 335.94623 * 4 2 1 35 35 H 1.09000 * 109.47070 * 215.94056 * 4 2 1 36 36 H 1.08996 * 109.46737 * 213.20204 * 7 6 5 37 37 H 1.08994 * 109.46768 * 333.20389 * 7 6 5 38 38 H 1.09003 * 109.47256 * 299.99482 * 8 7 6 39 39 H 1.08994 * 109.47424 * 60.00590 * 8 7 6 40 40 H 0.96994 * 120.00640 * 179.97438 * 12 11 9 41 41 H 1.08998 * 109.61369 * 319.32291 * 21 20 19 42 42 H 1.09007 * 109.61630 * 79.85278 * 21 20 19 43 43 H 1.09004 * 110.14795 * 186.07637 * 22 21 20 44 44 H 1.09000 * 108.18901 * 66.55568 * 22 21 20 45 45 H 1.09001 * 117.26947 * 1.27400 * 25 23 22 46 46 H 1.09001 * 117.58507 * 216.42055 * 25 23 22 47 47 H 1.08999 * 109.36635 * 300.73678 * 28 20 19 48 48 H 1.09000 * 109.35928 * 60.33303 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 7 2.4316 -1.6558 -1.3746 6 6 1.7458 -2.4733 -2.2298 7 6 0.4573 -3.1967 -1.9334 8 6 -0.7251 -2.3402 -2.3909 9 6 -2.0135 -3.0639 -2.0951 10 1 -1.9912 -4.0370 -1.6272 11 6 -3.2208 -2.4830 -2.4208 12 7 -3.2481 -1.2978 -2.9900 13 14 -4.8179 -3.3803 -2.0548 14 1 -4.5165 -4.6871 -1.4170 15 1 -5.6467 -2.5604 -1.1350 16 1 -5.5600 -3.6065 -3.3210 17 7 2.4161 -2.5159 -3.3462 18 7 3.4702 -1.7861 -3.2556 19 6 3.5297 -1.2348 -2.0664 20 7 4.5209 -0.3855 -1.6007 21 6 5.5038 -1.1182 -0.7866 22 6 6.2863 -0.1355 0.0709 23 6 6.8798 0.9677 -0.7966 24 1 7.2160 1.8445 -0.2431 25 6 7.6789 0.5919 -2.0203 26 6 6.2867 1.2214 -2.1773 27 1 6.2400 2.2549 -2.5208 28 6 5.1899 0.3010 -2.7119 29 1 -0.5400 0.9329 -0.0676 30 1 -0.5400 -0.9329 0.0676 31 1 3.1317 1.1079 0.0908 32 1 1.8700 1.8364 -0.9318 33 1 1.7338 1.9149 0.8412 34 1 1.4325 -2.0892 0.4179 35 1 2.9657 -1.2040 0.6026 36 1 0.4442 -4.1480 -2.4652 37 1 0.3811 -3.3785 -0.8614 38 1 -0.7119 -1.3888 -1.8590 39 1 -0.6489 -2.1584 -3.4628 40 1 -4.0973 -0.8894 -3.2196 41 1 4.9883 -1.8377 -0.1504 42 1 6.2042 -1.6391 -1.4396 43 1 7.0884 -0.6526 0.5976 44 1 5.6013 0.3036 0.7963 45 1 7.7796 -0.4701 -2.2442 46 1 8.5419 1.2095 -2.2689 47 1 5.6321 -0.4383 -3.3797 48 1 4.4591 0.8922 -3.2638 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001341979470.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:41 Heat of formation + Delta-G solvation = 121.027259 kcal Electronic energy + Delta-G solvation = -27528.113642 eV Core-core repulsion = 24006.453471 eV Total energy + Delta-G solvation = -3521.660171 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.60249 -39.98517 -36.61041 -35.68911 -33.97442 -33.03698 -31.79815 -31.46680 -28.58631 -27.35343 -26.65780 -26.03633 -25.26461 -24.11197 -22.04076 -21.47399 -21.08052 -19.98865 -18.60589 -18.48561 -17.25002 -16.59373 -16.26105 -15.93860 -15.56495 -14.98182 -14.56495 -14.50725 -14.19754 -14.00924 -13.93294 -13.36365 -13.10296 -12.99949 -12.90966 -12.74995 -12.29456 -11.92167 -11.68971 -11.65795 -11.56939 -11.33842 -11.21399 -11.02563 -11.01265 -10.95336 -10.69364 -10.50510 -10.17526 -10.09749 -9.92933 -9.80220 -9.65784 -9.21622 -9.02405 -8.87012 -8.38068 -8.03784 -6.04148 -4.07952 2.00712 2.25479 2.82219 3.28434 3.31037 3.36925 3.40015 3.48540 3.85713 4.37737 4.41745 4.48226 4.62665 4.73253 4.76621 4.89293 4.90530 4.97243 5.08575 5.20086 5.29823 5.32044 5.35919 5.43860 5.50562 5.53325 5.56494 5.67476 5.72735 5.79565 5.85887 5.88245 5.90649 5.93109 5.94552 6.20126 6.27553 6.31001 6.38403 6.47407 6.66647 6.72451 6.83880 6.98917 7.02227 7.50482 7.61973 7.73154 7.94465 8.31298 8.98401 9.23135 9.56282 11.06563 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.023736 B = 0.003373 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.364353 B = 8299.740849 C = 8754.897945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.175 4.175 3 C -0.107 4.107 4 C 0.155 3.845 5 N -0.464 5.464 6 C 0.215 3.785 7 C -0.031 4.031 8 C 0.026 3.974 9 C -0.523 4.523 10 H 0.058 0.942 11 C 0.061 3.939 12 N -0.889 5.889 13 Si 0.891 3.109 14 H -0.272 1.272 15 H -0.285 1.285 16 H -0.284 1.284 17 N -0.297 5.297 18 N -0.322 5.322 19 C 0.330 3.670 20 N -0.444 5.444 21 C 0.055 3.945 22 C -0.084 4.084 23 C -0.131 4.131 24 H 0.102 0.898 25 C -0.182 4.182 26 C -0.146 4.146 27 H 0.112 0.888 28 C 0.100 3.900 29 H 0.101 0.899 30 H 0.114 0.886 31 H 0.069 0.931 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.098 0.902 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.067 0.933 38 H 0.028 0.972 39 H 0.023 0.977 40 H 0.260 0.740 41 H 0.075 0.925 42 H 0.048 0.952 43 H 0.076 0.924 44 H 0.075 0.925 45 H 0.093 0.907 46 H 0.094 0.906 47 H 0.061 0.939 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.417 5.532 9.774 22.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.176 4.176 3 C -0.164 4.164 4 C 0.033 3.967 5 N -0.158 5.158 6 C -0.052 4.052 7 C -0.071 4.071 8 C -0.012 4.012 9 C -0.561 4.561 10 H 0.076 0.924 11 C -0.141 4.141 12 N -0.528 5.528 13 Si 0.719 3.281 14 H -0.197 1.197 15 H -0.211 1.211 16 H -0.210 1.210 17 N -0.136 5.136 18 N -0.166 5.166 19 C -0.027 4.027 20 N -0.168 5.168 21 C -0.073 4.073 22 C -0.121 4.121 23 C -0.150 4.150 24 H 0.120 0.880 25 C -0.219 4.219 26 C -0.165 4.165 27 H 0.130 0.870 28 C -0.027 4.027 29 H 0.120 0.880 30 H 0.132 0.868 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.116 0.884 35 H 0.109 0.891 36 H 0.105 0.895 37 H 0.085 0.915 38 H 0.046 0.954 39 H 0.042 0.958 40 H 0.070 0.930 41 H 0.093 0.907 42 H 0.067 0.933 43 H 0.095 0.905 44 H 0.094 0.906 45 H 0.112 0.888 46 H 0.113 0.887 47 H 0.079 0.921 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 19.486 5.648 8.594 22.033 hybrid contribution -1.034 -0.391 0.896 1.423 sum 18.452 5.257 9.490 21.405 Atomic orbital electron populations 1.24073 0.94969 1.03421 0.94485 1.21625 0.95376 0.94853 1.05742 1.20712 1.00398 0.94031 1.01222 1.20721 1.00380 0.96146 0.79439 1.46328 1.18110 1.37335 1.13999 1.25583 0.97916 0.95218 0.86499 1.20443 0.86731 0.98890 1.01073 1.19201 0.89566 0.94842 0.97622 1.21166 0.90628 1.03882 1.40413 0.92419 1.24982 0.99147 0.94899 0.95071 1.69978 1.25927 1.15345 1.41560 0.86558 0.83678 0.79855 0.78040 1.19684 1.21070 1.20981 1.74011 1.02288 1.17960 1.19346 1.74485 1.15864 1.10631 1.15604 1.22203 0.90993 0.99115 0.90345 1.58852 1.10738 1.24771 1.22451 1.22114 0.93323 0.95470 0.96363 1.20815 0.98647 0.95338 0.97341 1.21589 1.02486 1.00755 0.90125 0.87967 1.22973 0.94707 1.01585 1.02622 1.22328 0.93692 0.99916 1.00569 0.86982 1.21503 0.95017 0.95827 0.90308 0.88037 0.86781 0.91163 0.92305 0.92375 0.88366 0.89142 0.89505 0.91498 0.95375 0.95829 0.92983 0.90652 0.93337 0.90549 0.90600 0.88834 0.88707 0.92088 0.89625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.10 12.45 29.01 0.36 -1.74 16 2 C -0.18 -2.50 5.64 -101.07 -0.57 -3.07 16 3 C -0.11 -1.34 10.05 36.00 0.36 -0.98 16 4 C 0.16 2.12 6.16 -5.19 -0.03 2.09 16 5 N -0.46 -7.86 2.79 -115.36 -0.32 -8.18 16 6 C 0.22 4.32 7.32 -154.01 -1.13 3.19 16 7 C -0.03 -0.64 5.55 -27.88 -0.15 -0.80 16 8 C 0.03 0.64 4.96 -27.88 -0.14 0.51 16 9 C -0.52 -14.03 9.11 -34.44 -0.31 -14.34 16 10 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 11 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 12 N -0.89 -26.03 13.29 55.43 0.74 -25.30 16 13 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 16 14 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 15 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 16 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 17 N -0.30 -6.57 12.18 32.99 0.40 -6.16 16 18 N -0.32 -6.48 11.38 30.31 0.34 -6.13 16 19 C 0.33 5.56 6.76 -318.88 -2.16 3.40 16 20 N -0.44 -5.73 4.25 -175.06 -0.74 -6.48 16 21 C 0.05 0.57 5.24 -4.14 -0.02 0.55 16 22 C -0.08 -0.66 6.17 -27.51 -0.17 -0.83 16 23 C -0.13 -1.03 6.08 -92.30 -0.56 -1.60 16 24 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 25 C -0.18 -1.44 9.58 -27.47 -0.26 -1.70 16 26 C -0.15 -1.35 6.37 -90.70 -0.58 -1.93 16 27 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 28 C 0.10 1.23 4.93 -3.99 -0.02 1.21 16 29 H 0.10 1.58 8.05 -52.49 -0.42 1.16 16 30 H 0.11 2.00 7.08 -52.49 -0.37 1.63 16 31 H 0.07 0.83 7.56 -51.93 -0.39 0.43 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.10 1.27 6.87 -51.93 -0.36 0.91 16 35 H 0.09 1.01 7.54 -51.93 -0.39 0.61 16 36 H 0.09 1.77 8.14 -51.93 -0.42 1.35 16 37 H 0.07 1.21 7.09 -51.93 -0.37 0.84 16 38 H 0.03 0.71 5.49 -51.93 -0.29 0.43 16 39 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 41 H 0.07 0.79 7.36 -51.93 -0.38 0.41 16 42 H 0.05 0.53 7.00 -51.92 -0.36 0.17 16 43 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.09 0.79 7.24 -51.93 -0.38 0.42 16 46 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.06 0.82 7.77 -51.93 -0.40 0.41 16 48 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 383.08 15.07 5.77 5.77 Total: -1.00 -31.58 383.08 -12.19 -43.77 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -7.88 Total: 1.15 kcal Atomic # 6 Polarization: -8.96 SS G_CDS: -5.48 Total: -14.44 kcal Atomic # 7 Polarization: -52.67 SS G_CDS: 0.42 Total: -52.25 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.58 -12.19 -43.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341979470.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.802 kcal (2) G-P(sol) polarization free energy of solvation -31.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds