Wall clock time and date at job start Tue Mar 31 2020 11:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50699 * 119.99731 * 2 1 4 4 C 1.50702 * 119.99898 * 180.02562 * 2 1 3 5 5 N 1.46505 * 109.46843 * 95.94572 * 4 2 1 6 6 C 1.36745 * 127.13110 * 264.96029 * 5 4 2 7 7 C 1.50703 * 126.35063 * 359.73448 * 6 5 4 8 8 C 1.53000 * 109.46564 * 93.20200 * 7 6 5 9 9 C 1.50703 * 109.46564 * 179.97438 * 8 7 6 10 10 H 1.08001 * 120.00295 * 0.02562 * 9 8 7 11 11 C 1.37880 * 119.99681 * 179.97438 * 9 8 7 12 12 N 1.31508 * 120.00365 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 119.99804 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.46921 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.46898 * 120.00626 * 13 11 9 16 16 H 1.48502 * 109.47255 * 240.00250 * 13 11 9 17 17 N 1.30292 * 107.30148 * 180.02562 * 6 5 4 18 18 N 1.28529 * 110.05740 * 359.97438 * 17 6 5 19 19 C 1.31215 * 109.85800 * 0.02562 * 18 17 6 20 20 N 1.38583 * 126.47602 * 179.97438 * 19 18 17 21 21 C 1.47166 * 111.00204 * 261.62174 * 20 19 18 22 22 C 1.52098 * 109.49942 * 198.66651 * 21 20 19 23 23 C 1.52377 * 110.31701 * 306.93000 * 22 21 20 24 24 H 1.09004 * 114.41772 * 164.07880 * 23 22 21 25 25 C 1.50902 * 119.18367 * 308.97619 * 23 22 21 26 26 C 1.52404 * 118.99336 * 19.80437 * 23 22 21 27 27 H 1.09007 * 117.38577 * 143.73172 * 26 23 22 28 28 C 1.46746 * 110.99686 * 24.70156 * 20 19 18 29 29 H 1.08000 * 119.99951 * 4.14584 * 1 2 3 30 30 H 1.08000 * 120.00085 * 184.14541 * 1 2 3 31 31 H 1.09005 * 109.46619 * 174.93002 * 3 2 1 32 32 H 1.08993 * 109.47741 * 294.93146 * 3 2 1 33 33 H 1.09004 * 109.46810 * 54.93627 * 3 2 1 34 34 H 1.08996 * 109.47417 * 335.94623 * 4 2 1 35 35 H 1.09000 * 109.47070 * 215.94056 * 4 2 1 36 36 H 1.08996 * 109.46737 * 213.20204 * 7 6 5 37 37 H 1.08994 * 109.46768 * 333.20389 * 7 6 5 38 38 H 1.09003 * 109.47256 * 299.99482 * 8 7 6 39 39 H 1.08994 * 109.47424 * 60.00590 * 8 7 6 40 40 H 0.96994 * 120.00640 * 179.97438 * 12 11 9 41 41 H 1.08998 * 109.61369 * 319.32291 * 21 20 19 42 42 H 1.09007 * 109.61630 * 79.85278 * 21 20 19 43 43 H 1.09004 * 110.14795 * 186.07637 * 22 21 20 44 44 H 1.09000 * 108.18901 * 66.55568 * 22 21 20 45 45 H 1.09001 * 117.26947 * 1.27400 * 25 23 22 46 46 H 1.09001 * 117.58507 * 216.42055 * 25 23 22 47 47 H 1.08999 * 109.36635 * 300.73678 * 28 20 19 48 48 H 1.09000 * 109.35928 * 60.33303 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 7 2.4316 -1.6558 -1.3746 6 6 1.7458 -2.4733 -2.2298 7 6 0.4573 -3.1967 -1.9334 8 6 -0.7251 -2.3402 -2.3909 9 6 -2.0135 -3.0639 -2.0951 10 1 -1.9912 -4.0370 -1.6272 11 6 -3.2208 -2.4830 -2.4208 12 7 -3.2481 -1.2978 -2.9900 13 14 -4.8179 -3.3803 -2.0548 14 1 -4.5165 -4.6871 -1.4170 15 1 -5.6467 -2.5604 -1.1350 16 1 -5.5600 -3.6065 -3.3210 17 7 2.4161 -2.5159 -3.3462 18 7 3.4702 -1.7861 -3.2556 19 6 3.5297 -1.2348 -2.0664 20 7 4.5209 -0.3855 -1.6007 21 6 5.5038 -1.1182 -0.7866 22 6 6.2863 -0.1355 0.0709 23 6 6.8798 0.9677 -0.7966 24 1 7.2160 1.8445 -0.2431 25 6 7.6789 0.5919 -2.0203 26 6 6.2867 1.2214 -2.1773 27 1 6.2400 2.2549 -2.5208 28 6 5.1899 0.3010 -2.7119 29 1 -0.5400 0.9329 -0.0676 30 1 -0.5400 -0.9329 0.0676 31 1 3.1317 1.1079 0.0908 32 1 1.8700 1.8364 -0.9318 33 1 1.7338 1.9149 0.8412 34 1 1.4325 -2.0892 0.4179 35 1 2.9657 -1.2040 0.6026 36 1 0.4442 -4.1480 -2.4652 37 1 0.3811 -3.3785 -0.8614 38 1 -0.7119 -1.3888 -1.8590 39 1 -0.6489 -2.1584 -3.4628 40 1 -4.0973 -0.8894 -3.2196 41 1 4.9883 -1.8377 -0.1504 42 1 6.2042 -1.6391 -1.4396 43 1 7.0884 -0.6526 0.5976 44 1 5.6013 0.3036 0.7963 45 1 7.7796 -0.4701 -2.2442 46 1 8.5419 1.2095 -2.2689 47 1 5.6321 -0.4383 -3.3797 48 1 4.4591 0.8922 -3.2638 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001341979470.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:40 Heat of formation + Delta-G solvation = 106.428425 kcal Electronic energy + Delta-G solvation = -27528.746695 eV Core-core repulsion = 24006.453471 eV Total energy + Delta-G solvation = -3522.293224 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.04359 -40.83025 -37.87433 -36.74484 -35.78087 -34.45709 -33.47430 -32.42455 -30.18006 -28.48630 -27.91614 -27.21830 -26.88391 -24.99872 -23.80607 -22.41259 -22.26513 -21.47855 -19.77339 -19.38742 -18.61719 -18.23604 -17.51472 -17.24732 -16.55528 -16.47589 -16.06665 -15.73845 -15.28047 -15.04201 -14.99773 -14.85067 -14.71420 -14.19989 -14.05338 -13.70795 -13.59189 -13.31491 -13.02552 -12.88268 -12.76994 -12.66906 -12.50517 -12.43107 -12.34599 -12.26830 -12.00540 -11.84237 -11.74302 -11.50385 -11.24955 -11.14009 -10.96519 -10.72180 -10.55275 -10.29978 -10.08846 -9.41658 -8.16741 -6.27953 0.64078 0.94040 1.42302 1.44282 1.55998 1.58630 1.78607 2.43080 2.57801 2.97094 3.17811 3.48735 3.61211 3.63856 3.73363 3.75475 3.91538 3.95108 4.04538 4.08802 4.18538 4.26857 4.34693 4.38323 4.42926 4.65999 4.68681 4.71681 4.76987 4.83049 4.85542 4.86272 4.93076 4.94240 5.02999 5.04480 5.11266 5.15480 5.21333 5.26203 5.32961 5.50932 5.55805 5.61362 5.64835 5.68414 5.82725 5.84305 6.18879 6.22645 6.87712 7.41139 7.73141 8.94994 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.023736 B = 0.003373 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.364353 B = 8299.740849 C = 8754.897945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.161 4.161 3 C -0.102 4.102 4 C 0.147 3.853 5 N -0.459 5.459 6 C 0.201 3.799 7 C -0.017 4.017 8 C 0.036 3.964 9 C -0.534 4.534 10 H 0.069 0.931 11 C 0.005 3.995 12 N -0.930 5.930 13 Si 0.962 3.038 14 H -0.257 1.257 15 H -0.278 1.278 16 H -0.286 1.286 17 N -0.335 5.335 18 N -0.359 5.359 19 C 0.350 3.650 20 N -0.435 5.435 21 C 0.052 3.948 22 C -0.078 4.078 23 C -0.121 4.121 24 H 0.123 0.877 25 C -0.174 4.174 26 C -0.160 4.160 27 H 0.122 0.878 28 C 0.102 3.898 29 H 0.099 0.901 30 H 0.094 0.906 31 H 0.083 0.917 32 H 0.041 0.959 33 H 0.079 0.921 34 H 0.108 0.892 35 H 0.126 0.874 36 H 0.084 0.916 37 H 0.095 0.905 38 H 0.020 0.980 39 H -0.026 1.026 40 H 0.261 0.739 41 H 0.079 0.921 42 H 0.042 0.958 43 H 0.100 0.900 44 H 0.085 0.915 45 H 0.085 0.915 46 H 0.111 0.889 47 H 0.044 0.956 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.116 5.723 12.657 25.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.162 4.162 3 C -0.158 4.158 4 C 0.026 3.974 5 N -0.152 5.152 6 C -0.067 4.067 7 C -0.057 4.057 8 C -0.002 4.002 9 C -0.572 4.572 10 H 0.087 0.913 11 C -0.193 4.193 12 N -0.571 5.571 13 Si 0.787 3.213 14 H -0.181 1.181 15 H -0.204 1.204 16 H -0.212 1.212 17 N -0.174 5.174 18 N -0.203 5.203 19 C -0.007 4.007 20 N -0.160 5.160 21 C -0.075 4.075 22 C -0.116 4.116 23 C -0.139 4.139 24 H 0.141 0.859 25 C -0.211 4.211 26 C -0.179 4.179 27 H 0.140 0.860 28 C -0.025 4.025 29 H 0.117 0.883 30 H 0.113 0.887 31 H 0.102 0.898 32 H 0.060 0.940 33 H 0.098 0.902 34 H 0.126 0.874 35 H 0.144 0.856 36 H 0.103 0.897 37 H 0.113 0.887 38 H 0.038 0.962 39 H -0.007 1.007 40 H 0.070 0.930 41 H 0.097 0.903 42 H 0.061 0.939 43 H 0.118 0.882 44 H 0.104 0.896 45 H 0.103 0.897 46 H 0.129 0.871 47 H 0.062 0.938 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 21.207 5.829 11.499 24.818 hybrid contribution -1.456 -0.384 -0.016 1.506 sum 19.751 5.445 11.483 23.486 Atomic orbital electron populations 1.23952 0.95770 1.02466 0.97037 1.21864 0.94925 0.96113 1.03307 1.20719 1.00925 0.93010 1.01189 1.21086 1.02190 0.96014 0.78060 1.46403 1.17518 1.36553 1.14753 1.25343 0.98074 0.96379 0.86947 1.20165 0.85255 0.97729 1.02525 1.18985 0.91414 0.95442 0.94397 1.21571 0.91388 1.04291 1.39912 0.91282 1.25892 1.02981 0.95600 0.94836 1.70124 1.26841 1.17147 1.42945 0.85447 0.79008 0.79137 0.77737 1.18104 1.20394 1.21210 1.73904 1.03409 1.19339 1.20751 1.74402 1.15993 1.12108 1.17768 1.22654 0.91317 0.97425 0.89308 1.59139 1.10852 1.23717 1.22342 1.22277 0.92721 0.96323 0.96176 1.20862 0.99117 0.94742 0.96860 1.21733 1.01260 1.01346 0.89576 0.85928 1.23005 0.94311 1.01311 1.02513 1.22249 0.93377 0.99686 1.02564 0.86018 1.21465 0.95305 0.95613 0.90125 0.88298 0.88729 0.89820 0.94050 0.90220 0.87414 0.85613 0.89740 0.88697 0.96163 1.00726 0.92976 0.90272 0.93926 0.88177 0.89614 0.89658 0.87057 0.93812 0.91791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.97 12.45 67.78 0.84 -4.13 16 2 C -0.16 -4.43 5.64 -16.49 -0.09 -4.53 16 3 C -0.10 -2.35 10.05 71.24 0.72 -1.64 16 4 C 0.15 3.73 6.16 85.63 0.53 4.26 16 5 N -0.46 -15.33 2.79 -518.90 -1.45 -16.78 16 6 C 0.20 8.27 7.32 137.64 1.01 9.28 16 7 C -0.02 -0.71 5.55 29.85 0.17 -0.54 16 8 C 0.04 1.86 4.96 29.85 0.15 2.01 16 9 C -0.53 -29.04 9.11 25.60 0.23 -28.81 16 10 H 0.07 3.53 7.74 -2.91 -0.02 3.50 16 11 C 0.01 0.28 5.46 84.66 0.46 0.74 16 12 N -0.93 -56.06 13.29 21.45 0.28 -55.78 16 13 Si 0.96 43.29 29.54 68.60 2.03 45.32 16 14 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 15 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 16 H -0.29 -12.90 7.11 99.48 0.71 -12.20 16 17 N -0.34 -15.40 12.18 -49.53 -0.60 -16.01 16 18 N -0.36 -14.93 11.38 -58.01 -0.66 -15.59 16 19 C 0.35 11.75 6.76 260.11 1.76 13.51 16 20 N -0.44 -10.70 4.25 -707.77 -3.01 -13.71 16 21 C 0.05 0.95 5.24 85.95 0.45 1.40 16 22 C -0.08 -0.91 6.17 30.09 0.19 -0.72 16 23 C -0.12 -1.45 6.08 -11.88 -0.07 -1.53 16 24 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 25 C -0.17 -2.29 9.58 30.11 0.29 -2.00 16 26 C -0.16 -2.63 6.37 -10.84 -0.07 -2.70 16 27 H 0.12 1.78 8.14 -2.38 -0.02 1.76 16 28 C 0.10 2.48 4.93 86.28 0.43 2.91 16 29 H 0.10 3.18 8.05 -2.91 -0.02 3.15 16 30 H 0.09 3.42 7.08 -2.91 -0.02 3.39 16 31 H 0.08 1.70 7.56 -2.38 -0.02 1.68 16 32 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 34 H 0.11 2.56 6.87 -2.39 -0.02 2.54 16 35 H 0.13 2.32 7.54 -2.39 -0.02 2.30 16 36 H 0.08 3.51 8.14 -2.39 -0.02 3.49 16 37 H 0.09 3.35 7.09 -2.39 -0.02 3.33 16 38 H 0.02 1.07 5.49 -2.39 -0.01 1.06 16 39 H -0.03 -1.58 8.14 -2.39 -0.02 -1.60 16 40 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 41 H 0.08 1.42 7.36 -2.39 -0.02 1.41 16 42 H 0.04 0.86 7.00 -2.38 -0.02 0.84 16 43 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.08 1.28 7.24 -2.39 -0.02 1.27 16 46 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 47 H 0.04 1.20 7.77 -2.39 -0.02 1.19 16 48 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -71.73 383.08 4.51 -67.23 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: 0.94 Total: 17.81 kcal Atomic # 6 Polarization: -19.46 SS G_CDS: 6.98 Total: -12.48 kcal Atomic # 7 Polarization: -112.44 SS G_CDS: -5.43 Total: -117.87 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -71.73 4.51 -67.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341979470.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.655 kcal (2) G-P(sol) polarization free energy of solvation -71.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds