Wall clock time and date at job start Tue Mar 31 2020 11:15:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50703 * 120.00098 * 2 1 4 4 C 1.50702 * 120.00140 * 180.02562 * 2 1 3 5 5 N 1.46499 * 109.47244 * 94.91724 * 4 2 1 6 6 C 1.36738 * 127.13828 * 265.48679 * 5 4 2 7 7 C 1.50702 * 126.34539 * 0.02562 * 6 5 4 8 8 C 1.52999 * 109.47320 * 274.35977 * 7 6 5 9 9 C 1.50700 * 109.46970 * 175.13184 * 8 7 6 10 10 H 1.07999 * 119.99827 * 0.02562 * 9 8 7 11 11 C 1.37876 * 119.99587 * 179.97438 * 9 8 7 12 12 N 1.31507 * 120.00479 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 119.99744 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.47142 * 60.00308 * 13 11 9 15 15 H 1.48501 * 109.47135 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.46942 * 300.00395 * 13 11 9 17 17 N 1.30295 * 107.30589 * 179.75484 * 6 5 4 18 18 N 1.28530 * 110.05621 * 0.23938 * 17 6 5 19 19 C 1.31218 * 109.85729 * 0.02562 * 18 17 6 20 20 N 1.38579 * 126.47440 * 180.02562 * 19 18 17 21 21 C 1.46842 * 111.00195 * 255.79197 * 20 19 18 22 22 C 1.50144 * 110.27585 * 174.31374 * 21 20 19 23 23 C 1.29824 * 123.28287 * 342.92546 * 22 21 20 24 24 C 1.50696 * 118.55162 * 180.39833 * 23 22 21 25 25 C 1.50305 * 122.89237 * 0.37375 * 23 22 21 26 26 C 1.47249 * 110.99773 * 18.72358 * 20 19 18 27 27 H 1.08002 * 119.99991 * 5.19697 * 1 2 3 28 28 H 1.07995 * 119.99615 * 185.20394 * 1 2 3 29 29 H 1.08997 * 109.47130 * 184.76098 * 3 2 1 30 30 H 1.08997 * 109.47576 * 304.77117 * 3 2 1 31 31 H 1.09004 * 109.46553 * 64.76571 * 3 2 1 32 32 H 1.08998 * 109.46702 * 334.92088 * 4 2 1 33 33 H 1.08992 * 109.47475 * 214.91721 * 4 2 1 34 34 H 1.09000 * 109.46863 * 154.36175 * 7 6 5 35 35 H 1.08999 * 109.47188 * 34.36446 * 7 6 5 36 36 H 1.08999 * 109.46973 * 55.12646 * 8 7 6 37 37 H 1.09000 * 109.46960 * 295.13298 * 8 7 6 38 38 H 0.97001 * 120.00310 * 180.02562 * 12 11 9 39 39 H 1.09003 * 109.33303 * 294.56233 * 21 20 19 40 40 H 1.09001 * 109.33170 * 54.22474 * 21 20 19 41 41 H 1.07997 * 118.35441 * 162.95377 * 22 21 20 42 42 H 1.09003 * 109.47382 * 0.02562 * 24 23 22 43 43 H 1.09002 * 109.47731 * 120.00024 * 24 23 22 44 44 H 1.09002 * 109.47120 * 240.00048 * 24 23 22 45 45 H 1.09004 * 109.42901 * 103.60321 * 25 23 22 46 46 H 1.09001 * 109.42664 * 223.49787 * 25 23 22 47 47 H 1.08999 * 109.63365 * 287.49873 * 26 20 19 48 48 H 1.08994 * 109.63378 * 48.11423 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 7 2.4103 -1.6682 -1.3769 6 6 1.7064 -2.4854 -2.2173 7 6 0.4127 -3.1908 -1.9011 8 6 0.7133 -4.5210 -1.2076 9 6 -0.5791 -5.1703 -0.7845 10 1 -1.5208 -4.6830 -0.9901 11 6 -0.5594 -6.3868 -0.1359 12 7 0.5872 -6.9803 0.1140 13 14 -2.1615 -7.1913 0.3892 14 1 -3.0077 -7.4359 -0.8063 15 1 -1.8697 -8.4825 1.0622 16 1 -2.8806 -6.2948 1.3296 17 7 2.3584 -2.5366 -3.3442 18 7 3.4208 -1.8169 -3.2718 19 6 3.5045 -1.2638 -2.0848 20 7 4.5105 -0.4224 -1.6371 21 6 5.4213 -1.1287 -0.7273 22 6 6.5795 -0.2460 -0.3617 23 6 6.9023 0.8191 -1.0302 24 6 8.0923 1.6230 -0.5735 25 6 6.1416 1.2854 -2.2398 26 6 5.2622 0.1490 -2.7669 27 1 -0.5400 0.9315 -0.0847 28 1 -0.5399 -0.9314 0.0848 29 1 3.1321 1.1077 -0.0853 30 1 1.7377 1.9129 -0.8441 31 1 1.8657 1.8388 0.9297 32 1 1.4391 -2.0853 0.4347 33 1 2.9749 -1.1987 0.5876 34 1 -0.1342 -3.3783 -2.8252 35 1 -0.1904 -2.5658 -1.2425 36 1 1.3340 -4.3410 -0.3298 37 1 1.2418 -5.1790 -1.8974 38 1 0.6010 -7.8363 0.5700 39 1 4.8818 -1.4094 0.1773 40 1 5.7959 -2.0273 -1.2175 41 1 7.1741 -0.5106 0.5001 42 1 8.5302 1.1551 0.3082 43 1 8.8341 1.6594 -1.3713 44 1 7.7736 2.6359 -0.3272 45 1 5.5133 2.1337 -1.9682 46 1 6.8447 1.5887 -3.0155 47 1 5.8898 -0.6208 -3.2160 48 1 4.5666 0.5385 -3.5102 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001341983134.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:04 Heat of formation + Delta-G solvation = 106.760535 kcal Electronic energy + Delta-G solvation = -27128.824934 eV Core-core repulsion = 23606.546111 eV Total energy + Delta-G solvation = -3522.278823 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.61082 -39.31255 -36.74182 -35.12044 -34.04978 -33.07782 -31.69403 -31.10549 -29.34793 -27.68340 -27.37375 -26.68169 -25.21801 -23.95066 -23.33088 -21.77741 -20.91638 -20.06554 -18.69597 -17.89640 -17.06787 -16.48554 -16.21446 -15.79828 -15.18764 -14.98183 -14.55449 -14.46399 -14.21933 -14.06501 -13.82372 -13.56137 -13.35960 -13.19143 -12.99893 -12.77549 -12.37253 -12.15449 -12.08333 -11.96386 -11.82088 -11.49429 -11.38468 -11.22488 -11.06345 -10.97724 -10.81587 -10.71618 -10.34462 -10.02533 -9.88899 -9.70006 -9.27974 -9.20585 -9.18699 -8.95064 -8.43073 -8.01997 -6.07533 -4.11954 1.86508 1.95342 2.17016 2.77831 3.28072 3.29324 3.34513 3.36878 3.82020 4.39324 4.42640 4.53955 4.65679 4.72987 4.89463 4.98279 5.04150 5.12848 5.20702 5.27412 5.28649 5.30103 5.34682 5.43694 5.44256 5.53681 5.56624 5.60667 5.64643 5.67480 5.71345 5.81973 5.88584 5.92876 5.99842 6.16169 6.34014 6.39991 6.46886 6.53085 6.61833 6.69337 6.74854 6.77800 6.98150 7.47951 7.52341 7.66533 7.89574 8.27189 8.93964 9.21701 9.52883 11.03438 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.017911 B = 0.003302 C = 0.003171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.898070 B = 8477.133895 C = 8829.203852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.149 4.149 3 C -0.115 4.115 4 C 0.146 3.854 5 N -0.464 5.464 6 C 0.218 3.782 7 C -0.033 4.033 8 C 0.032 3.968 9 C -0.525 4.525 10 H 0.058 0.942 11 C 0.060 3.940 12 N -0.892 5.892 13 Si 0.894 3.106 14 H -0.275 1.275 15 H -0.287 1.287 16 H -0.276 1.276 17 N -0.299 5.299 18 N -0.321 5.321 19 C 0.331 3.669 20 N -0.445 5.445 21 C 0.086 3.914 22 C -0.159 4.159 23 C -0.117 4.117 24 C -0.118 4.118 25 C -0.079 4.079 26 C 0.072 3.928 27 H 0.102 0.898 28 H 0.108 0.892 29 H 0.076 0.924 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.109 0.891 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.070 0.930 36 H 0.013 0.987 37 H 0.025 0.975 38 H 0.262 0.738 39 H 0.086 0.914 40 H 0.059 0.941 41 H 0.116 0.884 42 H 0.060 0.940 43 H 0.064 0.936 44 H 0.065 0.935 45 H 0.082 0.918 46 H 0.081 0.919 47 H 0.056 0.944 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.815 19.520 1.970 22.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.150 4.150 3 C -0.172 4.172 4 C 0.023 3.977 5 N -0.157 5.157 6 C -0.050 4.050 7 C -0.072 4.072 8 C -0.006 4.006 9 C -0.563 4.563 10 H 0.077 0.923 11 C -0.142 4.142 12 N -0.531 5.531 13 Si 0.722 3.278 14 H -0.201 1.201 15 H -0.213 1.213 16 H -0.202 1.202 17 N -0.138 5.138 18 N -0.166 5.166 19 C -0.026 4.026 20 N -0.170 5.170 21 C -0.041 4.041 22 C -0.178 4.178 23 C -0.117 4.117 24 C -0.175 4.175 25 C -0.117 4.117 26 C -0.056 4.056 27 H 0.120 0.880 28 H 0.126 0.874 29 H 0.095 0.905 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.127 0.873 33 H 0.112 0.888 34 H 0.106 0.894 35 H 0.089 0.911 36 H 0.031 0.969 37 H 0.043 0.957 38 H 0.072 0.928 39 H 0.105 0.895 40 H 0.077 0.923 41 H 0.134 0.866 42 H 0.079 0.921 43 H 0.083 0.917 44 H 0.084 0.916 45 H 0.100 0.900 46 H 0.099 0.901 47 H 0.074 0.926 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 11.063 19.383 0.898 22.336 hybrid contribution -0.785 -0.799 1.416 1.806 sum 10.279 18.583 2.314 21.362 Atomic orbital electron populations 1.23958 0.95252 1.02723 0.98239 1.21827 0.95494 0.95302 1.02335 1.20822 1.01293 0.93900 1.01205 1.20852 1.01299 0.95862 0.79678 1.46201 1.18140 1.37547 1.13797 1.25539 0.98779 0.94175 0.86488 1.20467 0.86815 0.97610 1.02357 1.19066 0.97456 0.89044 0.95026 1.21099 0.92491 1.04807 1.37913 0.92334 1.25004 0.96262 0.97092 0.95822 1.69955 1.24866 1.16757 1.41486 0.86626 0.83687 0.78638 0.78884 1.20064 1.21281 1.20190 1.74007 1.02640 1.17473 1.19634 1.74502 1.15289 1.10678 1.16088 1.22287 0.90984 0.98983 0.90341 1.59083 1.10419 1.29510 1.17997 1.21068 0.91620 0.95110 0.96319 1.21983 0.98151 0.96868 1.00765 1.20985 0.97121 0.96467 0.97124 1.20906 0.95716 0.99759 1.01120 1.20533 0.97385 0.98176 0.95582 1.22087 0.96042 0.96515 0.90917 0.88012 0.87406 0.90541 0.92184 0.91898 0.87263 0.88847 0.89359 0.91110 0.96876 0.95694 0.92793 0.89545 0.92333 0.86618 0.92086 0.91678 0.91618 0.90009 0.90091 0.92574 0.89426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.98 13.91 29.01 0.40 -1.58 16 2 C -0.15 -1.86 5.64 -101.06 -0.57 -2.43 16 3 C -0.12 -1.24 10.05 36.01 0.36 -0.88 16 4 C 0.15 2.07 6.09 -5.19 -0.03 2.04 16 5 N -0.46 -7.98 2.79 -115.37 -0.32 -8.30 16 6 C 0.22 4.39 7.32 -154.02 -1.13 3.27 16 7 C -0.03 -0.67 5.26 -27.88 -0.15 -0.82 16 8 C 0.03 0.81 4.96 -27.88 -0.14 0.67 16 9 C -0.52 -14.17 9.11 -34.44 -0.31 -14.48 16 10 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 11 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 12 N -0.89 -26.24 13.29 55.43 0.74 -25.51 16 13 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 14 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 15 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 16 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 17 N -0.30 -6.56 12.18 32.99 0.40 -6.16 16 18 N -0.32 -6.46 11.44 30.32 0.35 -6.11 16 19 C 0.33 5.62 6.85 -318.87 -2.19 3.44 16 20 N -0.45 -5.90 4.02 -175.93 -0.71 -6.60 16 21 C 0.09 1.03 5.56 -5.28 -0.03 1.00 16 22 C -0.16 -1.54 9.53 -35.96 -0.34 -1.88 16 23 C -0.12 -1.02 5.89 -100.93 -0.59 -1.62 16 24 C -0.12 -0.78 10.02 36.00 0.36 -0.42 16 25 C -0.08 -0.69 6.05 -28.04 -0.17 -0.86 16 26 C 0.07 0.85 5.02 -3.60 -0.02 0.83 16 27 H 0.10 1.06 8.05 -52.49 -0.42 0.63 16 28 H 0.11 1.38 6.98 -52.49 -0.37 1.02 16 29 H 0.08 0.86 7.27 -51.93 -0.38 0.48 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.11 1.66 7.55 -51.93 -0.39 1.27 16 33 H 0.09 1.17 6.47 -51.93 -0.34 0.83 16 34 H 0.09 1.81 8.14 -51.93 -0.42 1.39 16 35 H 0.07 1.31 7.01 -51.93 -0.36 0.95 16 36 H 0.01 0.34 8.08 -51.93 -0.42 -0.08 16 37 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 39 H 0.09 1.02 6.51 -51.93 -0.34 0.68 16 40 H 0.06 0.80 8.10 -51.93 -0.42 0.38 16 41 H 0.12 0.95 7.63 -52.49 -0.40 0.55 16 42 H 0.06 0.37 7.62 -51.93 -0.40 -0.02 16 43 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 44 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 46 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.06 0.72 8.08 -51.93 -0.42 0.30 16 48 H 0.09 1.10 7.98 -51.93 -0.41 0.69 16 LS Contribution 389.80 15.07 5.87 5.87 Total: -1.00 -31.73 389.80 -11.32 -43.05 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -7.99 Total: -0.10 kcal Atomic # 6 Polarization: -7.50 SS G_CDS: -4.64 Total: -12.14 kcal Atomic # 7 Polarization: -53.14 SS G_CDS: 0.46 Total: -52.68 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.73 -11.32 -43.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341983134.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.809 kcal (2) G-P(sol) polarization free energy of solvation -31.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds