Wall clock time and date at job start Tue Mar 31 2020 11:15:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.31001 * 1
3 3 C 1.50703 * 120.00098 * 2 1
4 4 C 1.50702 * 120.00140 * 180.02562 * 2 1 3
5 5 N 1.46499 * 109.47244 * 94.91724 * 4 2 1
6 6 C 1.36738 * 127.13828 * 265.48679 * 5 4 2
7 7 C 1.50702 * 126.34539 * 0.02562 * 6 5 4
8 8 C 1.52999 * 109.47320 * 274.35977 * 7 6 5
9 9 C 1.50700 * 109.46970 * 175.13184 * 8 7 6
10 10 H 1.07999 * 119.99827 * 0.02562 * 9 8 7
11 11 C 1.37876 * 119.99587 * 179.97438 * 9 8 7
12 12 N 1.31507 * 120.00479 * 0.02562 * 11 9 8
13 13 Si 1.86804 * 119.99744 * 179.97438 * 11 9 8
14 14 H 1.48503 * 109.47142 * 60.00308 * 13 11 9
15 15 H 1.48501 * 109.47135 * 180.02562 * 13 11 9
16 16 H 1.48500 * 109.46942 * 300.00395 * 13 11 9
17 17 N 1.30295 * 107.30589 * 179.75484 * 6 5 4
18 18 N 1.28530 * 110.05621 * 0.23938 * 17 6 5
19 19 C 1.31218 * 109.85729 * 0.02562 * 18 17 6
20 20 N 1.38579 * 126.47440 * 180.02562 * 19 18 17
21 21 C 1.46842 * 111.00195 * 255.79197 * 20 19 18
22 22 C 1.50144 * 110.27585 * 174.31374 * 21 20 19
23 23 C 1.29824 * 123.28287 * 342.92546 * 22 21 20
24 24 C 1.50696 * 118.55162 * 180.39833 * 23 22 21
25 25 C 1.50305 * 122.89237 * 0.37375 * 23 22 21
26 26 C 1.47249 * 110.99773 * 18.72358 * 20 19 18
27 27 H 1.08002 * 119.99991 * 5.19697 * 1 2 3
28 28 H 1.07995 * 119.99615 * 185.20394 * 1 2 3
29 29 H 1.08997 * 109.47130 * 184.76098 * 3 2 1
30 30 H 1.08997 * 109.47576 * 304.77117 * 3 2 1
31 31 H 1.09004 * 109.46553 * 64.76571 * 3 2 1
32 32 H 1.08998 * 109.46702 * 334.92088 * 4 2 1
33 33 H 1.08992 * 109.47475 * 214.91721 * 4 2 1
34 34 H 1.09000 * 109.46863 * 154.36175 * 7 6 5
35 35 H 1.08999 * 109.47188 * 34.36446 * 7 6 5
36 36 H 1.08999 * 109.46973 * 55.12646 * 8 7 6
37 37 H 1.09000 * 109.46960 * 295.13298 * 8 7 6
38 38 H 0.97001 * 120.00310 * 180.02562 * 12 11 9
39 39 H 1.09003 * 109.33303 * 294.56233 * 21 20 19
40 40 H 1.09001 * 109.33170 * 54.22474 * 21 20 19
41 41 H 1.07997 * 118.35441 * 162.95377 * 22 21 20
42 42 H 1.09003 * 109.47382 * 0.02562 * 24 23 22
43 43 H 1.09002 * 109.47731 * 120.00024 * 24 23 22
44 44 H 1.09002 * 109.47120 * 240.00048 * 24 23 22
45 45 H 1.09004 * 109.42901 * 103.60321 * 25 23 22
46 46 H 1.09001 * 109.42664 * 223.49787 * 25 23 22
47 47 H 1.08999 * 109.63365 * 287.49873 * 26 20 19
48 48 H 1.08994 * 109.63378 * 48.11423 * 26 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3100 0.0000 0.0000
3 6 2.0635 1.3051 0.0000
4 6 2.0635 -1.3051 -0.0006
5 7 2.4103 -1.6682 -1.3769
6 6 1.7064 -2.4854 -2.2173
7 6 0.4127 -3.1908 -1.9011
8 6 0.7133 -4.5210 -1.2076
9 6 -0.5791 -5.1703 -0.7845
10 1 -1.5208 -4.6830 -0.9901
11 6 -0.5594 -6.3868 -0.1359
12 7 0.5872 -6.9803 0.1140
13 14 -2.1615 -7.1913 0.3892
14 1 -3.0077 -7.4359 -0.8063
15 1 -1.8697 -8.4825 1.0622
16 1 -2.8806 -6.2948 1.3296
17 7 2.3584 -2.5366 -3.3442
18 7 3.4208 -1.8169 -3.2718
19 6 3.5045 -1.2638 -2.0848
20 7 4.5105 -0.4224 -1.6371
21 6 5.4213 -1.1287 -0.7273
22 6 6.5795 -0.2460 -0.3617
23 6 6.9023 0.8191 -1.0302
24 6 8.0923 1.6230 -0.5735
25 6 6.1416 1.2854 -2.2398
26 6 5.2622 0.1490 -2.7669
27 1 -0.5400 0.9315 -0.0847
28 1 -0.5399 -0.9314 0.0848
29 1 3.1321 1.1077 -0.0853
30 1 1.7377 1.9129 -0.8441
31 1 1.8657 1.8388 0.9297
32 1 1.4391 -2.0853 0.4347
33 1 2.9749 -1.1987 0.5876
34 1 -0.1342 -3.3783 -2.8252
35 1 -0.1904 -2.5658 -1.2425
36 1 1.3340 -4.3410 -0.3298
37 1 1.2418 -5.1790 -1.8974
38 1 0.6010 -7.8363 0.5700
39 1 4.8818 -1.4094 0.1773
40 1 5.7959 -2.0273 -1.2175
41 1 7.1741 -0.5106 0.5001
42 1 8.5302 1.1551 0.3082
43 1 8.8341 1.6594 -1.3713
44 1 7.7736 2.6359 -0.3272
45 1 5.5133 2.1337 -1.9682
46 1 6.8447 1.5887 -3.0155
47 1 5.8898 -0.6208 -3.2160
48 1 4.5666 0.5385 -3.5102
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001341983134.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:15:03
Heat of formation + Delta-G solvation = 92.366306 kcal
Electronic energy + Delta-G solvation = -27129.449115 eV
Core-core repulsion = 23606.546111 eV
Total energy + Delta-G solvation = -3522.903003 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 316.196 amu
Computer time = 0.78 seconds
Orbital eigenvalues (eV)
-44.07641 -40.28061 -37.89866 -36.32970 -35.65842 -34.46348 -33.48685 -31.98938
-30.67747 -28.91830 -28.32096 -27.80190 -27.03554 -24.88274 -24.31708 -23.62532
-22.18961 -21.60010 -19.80428 -18.84435 -18.58716 -18.12871 -17.49607 -17.09946
-16.51529 -16.13447 -16.02950 -15.48768 -15.34068 -15.21121 -14.91272 -14.75663
-14.56727 -14.27484 -14.19038 -14.03521 -13.60660 -13.34237 -13.10301 -12.86460
-12.85088 -12.83068 -12.77696 -12.64499 -12.51498 -12.37673 -12.13555 -12.05099
-11.80593 -11.61391 -11.57842 -11.33981 -11.06186 -10.57952 -10.55820 -10.17856
-9.76192 -9.41253 -8.21052 -6.33616 0.66283 0.81587 1.24757 1.42879
1.45954 1.53446 1.58110 1.73780 2.41386 2.63439 3.13175 3.43177
3.55626 3.62189 3.68291 3.75089 3.96514 4.01667 4.07593 4.16979
4.25087 4.30205 4.38823 4.51037 4.56432 4.59310 4.68710 4.71110
4.78330 4.81240 4.84034 4.85113 4.89162 4.95139 5.00170 5.01027
5.10591 5.15375 5.20882 5.39055 5.42040 5.53959 5.57044 5.60884
5.69967 5.76742 5.80847 6.00586 6.13469 6.18167 6.81592 7.36549
7.69155 8.90759
Molecular weight = 316.20amu
Principal moments of inertia in cm(-1)
A = 0.017911 B = 0.003302 C = 0.003171
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1562.898070 B = 8477.133895 C = 8829.203852
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.160 4.160
2 C -0.157 4.157
3 C -0.107 4.107
4 C 0.140 3.860
5 N -0.460 5.460
6 C 0.202 3.798
7 C -0.015 4.015
8 C 0.045 3.955
9 C -0.539 4.539
10 H 0.072 0.928
11 C 0.003 3.997
12 N -0.934 5.934
13 Si 0.967 3.033
14 H -0.268 1.268
15 H -0.287 1.287
16 H -0.261 1.261
17 N -0.332 5.332
18 N -0.354 5.354
19 C 0.348 3.652
20 N -0.434 5.434
21 C 0.087 3.913
22 C -0.175 4.175
23 C -0.108 4.108
24 C -0.116 4.116
25 C -0.073 4.073
26 C 0.069 3.931
27 H 0.124 0.876
28 H 0.097 0.903
29 H 0.070 0.930
30 H 0.059 0.941
31 H 0.082 0.918
32 H 0.095 0.905
33 H 0.110 0.890
34 H 0.087 0.913
35 H 0.093 0.907
36 H -0.006 1.006
37 H -0.018 1.018
38 H 0.263 0.737
39 H 0.087 0.913
40 H 0.036 0.964
41 H 0.133 0.867
42 H 0.066 0.934
43 H 0.075 0.925
44 H 0.077 0.923
45 H 0.093 0.907
46 H 0.103 0.897
47 H 0.042 0.958
48 H 0.078 0.922
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.692 22.061 3.242 24.729
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.198 4.198
2 C -0.158 4.158
3 C -0.164 4.164
4 C 0.019 3.981
5 N -0.152 5.152
6 C -0.067 4.067
7 C -0.055 4.055
8 C 0.007 3.993
9 C -0.577 4.577
10 H 0.091 0.909
11 C -0.195 4.195
12 N -0.574 5.574
13 Si 0.791 3.209
14 H -0.193 1.193
15 H -0.213 1.213
16 H -0.185 1.185
17 N -0.171 5.171
18 N -0.198 5.198
19 C -0.009 4.009
20 N -0.159 5.159
21 C -0.040 4.040
22 C -0.193 4.193
23 C -0.108 4.108
24 C -0.172 4.172
25 C -0.111 4.111
26 C -0.058 4.058
27 H 0.142 0.858
28 H 0.115 0.885
29 H 0.089 0.911
30 H 0.078 0.922
31 H 0.101 0.899
32 H 0.114 0.886
33 H 0.128 0.872
34 H 0.106 0.894
35 H 0.111 0.889
36 H 0.013 0.987
37 H 0.001 0.999
38 H 0.072 0.928
39 H 0.105 0.895
40 H 0.054 0.946
41 H 0.151 0.849
42 H 0.085 0.915
43 H 0.094 0.906
44 H 0.096 0.904
45 H 0.111 0.889
46 H 0.122 0.878
47 H 0.060 0.940
48 H 0.096 0.904
Dipole moment (debyes) X Y Z Total
from point charges 10.941 21.951 2.178 24.623
hybrid contribution -0.657 -1.536 1.010 1.952
sum 10.284 20.415 3.188 23.081
Atomic orbital electron populations
1.24099 0.95181 1.03299 0.97246 1.21870 0.95705 0.95046 1.03141
1.20778 1.00553 0.92830 1.02237 1.21068 1.02247 0.96628 0.78121
1.46330 1.17652 1.36750 1.14484 1.25303 0.99018 0.95364 0.87022
1.20165 0.87523 0.95659 1.02159 1.18822 0.96312 0.90653 0.93546
1.21537 0.93436 1.05191 1.37520 0.90949 1.25973 0.99923 0.97831
0.95814 1.70108 1.27471 1.17254 1.42529 0.85476 0.79108 0.77534
0.78802 1.19270 1.21310 1.18499 1.73898 1.03600 1.18522 1.21045
1.74416 1.15295 1.12013 1.18086 1.22709 0.91252 0.97512 0.89406
1.59327 1.10167 1.28076 1.18377 1.21084 0.92289 0.95035 0.95570
1.21952 0.97826 0.97314 1.02226 1.21244 0.97301 0.96016 0.96226
1.20927 0.94739 0.99882 1.01692 1.20564 0.97346 0.96860 0.96286
1.22192 0.95929 0.97159 0.90531 0.85814 0.88468 0.91057 0.92168
0.89907 0.88629 0.87207 0.89432 0.88876 0.98741 0.99930 0.92779
0.89519 0.94615 0.84941 0.91488 0.90650 0.90428 0.88911 0.87849
0.93956 0.90393
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -3.61 13.91 67.78 0.94 -2.67 16
2 C -0.16 -3.70 5.64 -16.49 -0.09 -3.79 16
3 C -0.11 -2.05 10.05 71.24 0.72 -1.33 16
4 C 0.14 3.97 6.09 85.63 0.52 4.50 16
5 N -0.46 -16.14 2.79 -518.92 -1.45 -17.59 16
6 C 0.20 8.45 7.32 137.64 1.01 9.45 16
7 C -0.02 -0.65 5.26 29.85 0.16 -0.49 16
8 C 0.04 2.36 4.96 29.85 0.15 2.51 16
9 C -0.54 -29.47 9.11 25.60 0.23 -29.24 16
10 H 0.07 3.68 7.74 -2.91 -0.02 3.65 16
11 C 0.00 0.15 5.46 84.66 0.46 0.62 16
12 N -0.93 -56.40 13.29 21.45 0.28 -56.12 16
13 Si 0.97 43.05 29.54 68.60 2.03 45.08 16
14 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16
15 H -0.29 -12.72 7.11 99.48 0.71 -12.02 16
16 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16
17 N -0.33 -15.21 12.18 -49.54 -0.60 -15.82 16
18 N -0.35 -14.78 11.44 -58.00 -0.66 -15.45 16
19 C 0.35 12.11 6.85 260.11 1.78 13.89 16
20 N -0.43 -11.38 4.02 -710.52 -2.85 -14.23 16
21 C 0.09 2.08 5.56 85.39 0.47 2.55 16
22 C -0.17 -3.08 9.53 26.68 0.25 -2.83 16
23 C -0.11 -1.60 5.89 -15.40 -0.09 -1.69 16
24 C -0.12 -1.12 10.02 71.23 0.71 -0.41 16
25 C -0.07 -1.11 6.05 29.74 0.18 -0.93 16
26 C 0.07 1.59 5.02 86.26 0.43 2.02 16
27 H 0.12 2.24 8.05 -2.91 -0.02 2.21 16
28 H 0.10 2.39 6.98 -2.91 -0.02 2.37 16
29 H 0.07 1.43 7.27 -2.39 -0.02 1.42 16
30 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16
31 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16
32 H 0.10 2.97 7.55 -2.39 -0.02 2.95 16
33 H 0.11 2.70 6.47 -2.39 -0.02 2.68 16
34 H 0.09 3.68 8.14 -2.39 -0.02 3.66 16
35 H 0.09 3.46 7.01 -2.39 -0.02 3.44 16
36 H -0.01 -0.32 8.08 -2.39 -0.02 -0.34 16
37 H -0.02 -1.07 8.14 -2.39 -0.02 -1.09 16
38 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16
39 H 0.09 2.02 6.51 -2.39 -0.02 2.01 16
40 H 0.04 1.01 8.10 -2.39 -0.02 0.99 16
41 H 0.13 1.89 7.63 -2.91 -0.02 1.87 16
42 H 0.07 0.60 7.62 -2.39 -0.02 0.58 16
43 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16
44 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16
45 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16
46 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16
47 H 0.04 1.09 8.08 -2.39 -0.02 1.08 16
48 H 0.08 1.95 7.98 -2.39 -0.02 1.94 16
Total: -1.00 -70.85 389.80 5.51 -65.34
By element:
Atomic # 1 Polarization: 15.70 SS G_CDS: 0.93 Total: 16.62 kcal
Atomic # 6 Polarization: -15.68 SS G_CDS: 7.84 Total: -7.84 kcal
Atomic # 7 Polarization: -113.92 SS G_CDS: -5.28 Total: -119.20 kcal
Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal
Total: -70.85 5.51 -65.34 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001341983134.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 157.705 kcal
(2) G-P(sol) polarization free energy of solvation -70.853 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.852 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.515 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.338 kcal
(6) G-S(sol) free energy of system = (1) + (5) 92.366 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.78 seconds