Wall clock time and date at job start Tue Mar 31 2020 11:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50703 * 120.00098 * 2 1 4 4 C 1.50702 * 120.00140 * 180.02562 * 2 1 3 5 5 N 1.46499 * 109.47244 * 94.91724 * 4 2 1 6 6 C 1.36738 * 127.13828 * 265.48679 * 5 4 2 7 7 C 1.50702 * 126.34539 * 0.02562 * 6 5 4 8 8 C 1.52999 * 109.47320 * 274.35977 * 7 6 5 9 9 C 1.50700 * 109.46970 * 175.13184 * 8 7 6 10 10 H 1.07999 * 119.99827 * 0.02562 * 9 8 7 11 11 C 1.37876 * 119.99587 * 179.97438 * 9 8 7 12 12 N 1.31507 * 120.00479 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 119.99744 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.47142 * 60.00308 * 13 11 9 15 15 H 1.48501 * 109.47135 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.46942 * 300.00395 * 13 11 9 17 17 N 1.30295 * 107.30589 * 179.75484 * 6 5 4 18 18 N 1.28530 * 110.05621 * 0.23938 * 17 6 5 19 19 C 1.31218 * 109.85729 * 0.02562 * 18 17 6 20 20 N 1.38579 * 126.47440 * 180.02562 * 19 18 17 21 21 C 1.46842 * 111.00195 * 255.79197 * 20 19 18 22 22 C 1.50144 * 110.27585 * 174.31374 * 21 20 19 23 23 C 1.29824 * 123.28287 * 342.92546 * 22 21 20 24 24 C 1.50696 * 118.55162 * 180.39833 * 23 22 21 25 25 C 1.50305 * 122.89237 * 0.37375 * 23 22 21 26 26 C 1.47249 * 110.99773 * 18.72358 * 20 19 18 27 27 H 1.08002 * 119.99991 * 5.19697 * 1 2 3 28 28 H 1.07995 * 119.99615 * 185.20394 * 1 2 3 29 29 H 1.08997 * 109.47130 * 184.76098 * 3 2 1 30 30 H 1.08997 * 109.47576 * 304.77117 * 3 2 1 31 31 H 1.09004 * 109.46553 * 64.76571 * 3 2 1 32 32 H 1.08998 * 109.46702 * 334.92088 * 4 2 1 33 33 H 1.08992 * 109.47475 * 214.91721 * 4 2 1 34 34 H 1.09000 * 109.46863 * 154.36175 * 7 6 5 35 35 H 1.08999 * 109.47188 * 34.36446 * 7 6 5 36 36 H 1.08999 * 109.46973 * 55.12646 * 8 7 6 37 37 H 1.09000 * 109.46960 * 295.13298 * 8 7 6 38 38 H 0.97001 * 120.00310 * 180.02562 * 12 11 9 39 39 H 1.09003 * 109.33303 * 294.56233 * 21 20 19 40 40 H 1.09001 * 109.33170 * 54.22474 * 21 20 19 41 41 H 1.07997 * 118.35441 * 162.95377 * 22 21 20 42 42 H 1.09003 * 109.47382 * 0.02562 * 24 23 22 43 43 H 1.09002 * 109.47731 * 120.00024 * 24 23 22 44 44 H 1.09002 * 109.47120 * 240.00048 * 24 23 22 45 45 H 1.09004 * 109.42901 * 103.60321 * 25 23 22 46 46 H 1.09001 * 109.42664 * 223.49787 * 25 23 22 47 47 H 1.08999 * 109.63365 * 287.49873 * 26 20 19 48 48 H 1.08994 * 109.63378 * 48.11423 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 7 2.4103 -1.6682 -1.3769 6 6 1.7064 -2.4854 -2.2173 7 6 0.4127 -3.1908 -1.9011 8 6 0.7133 -4.5210 -1.2076 9 6 -0.5791 -5.1703 -0.7845 10 1 -1.5208 -4.6830 -0.9901 11 6 -0.5594 -6.3868 -0.1359 12 7 0.5872 -6.9803 0.1140 13 14 -2.1615 -7.1913 0.3892 14 1 -3.0077 -7.4359 -0.8063 15 1 -1.8697 -8.4825 1.0622 16 1 -2.8806 -6.2948 1.3296 17 7 2.3584 -2.5366 -3.3442 18 7 3.4208 -1.8169 -3.2718 19 6 3.5045 -1.2638 -2.0848 20 7 4.5105 -0.4224 -1.6371 21 6 5.4213 -1.1287 -0.7273 22 6 6.5795 -0.2460 -0.3617 23 6 6.9023 0.8191 -1.0302 24 6 8.0923 1.6230 -0.5735 25 6 6.1416 1.2854 -2.2398 26 6 5.2622 0.1490 -2.7669 27 1 -0.5400 0.9315 -0.0847 28 1 -0.5399 -0.9314 0.0848 29 1 3.1321 1.1077 -0.0853 30 1 1.7377 1.9129 -0.8441 31 1 1.8657 1.8388 0.9297 32 1 1.4391 -2.0853 0.4347 33 1 2.9749 -1.1987 0.5876 34 1 -0.1342 -3.3783 -2.8252 35 1 -0.1904 -2.5658 -1.2425 36 1 1.3340 -4.3410 -0.3298 37 1 1.2418 -5.1790 -1.8974 38 1 0.6010 -7.8363 0.5700 39 1 4.8818 -1.4094 0.1773 40 1 5.7959 -2.0273 -1.2175 41 1 7.1741 -0.5106 0.5001 42 1 8.5302 1.1551 0.3082 43 1 8.8341 1.6594 -1.3713 44 1 7.7736 2.6359 -0.3272 45 1 5.5133 2.1337 -1.9682 46 1 6.8447 1.5887 -3.0155 47 1 5.8898 -0.6208 -3.2160 48 1 4.5666 0.5385 -3.5102 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001341983134.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:03 Heat of formation + Delta-G solvation = 92.366306 kcal Electronic energy + Delta-G solvation = -27129.449115 eV Core-core repulsion = 23606.546111 eV Total energy + Delta-G solvation = -3522.903003 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.07641 -40.28061 -37.89866 -36.32970 -35.65842 -34.46348 -33.48685 -31.98938 -30.67747 -28.91830 -28.32096 -27.80190 -27.03554 -24.88274 -24.31708 -23.62532 -22.18961 -21.60010 -19.80428 -18.84435 -18.58716 -18.12871 -17.49607 -17.09946 -16.51529 -16.13447 -16.02950 -15.48768 -15.34068 -15.21121 -14.91272 -14.75663 -14.56727 -14.27484 -14.19038 -14.03521 -13.60660 -13.34237 -13.10301 -12.86460 -12.85088 -12.83068 -12.77696 -12.64499 -12.51498 -12.37673 -12.13555 -12.05099 -11.80593 -11.61391 -11.57842 -11.33981 -11.06186 -10.57952 -10.55820 -10.17856 -9.76192 -9.41253 -8.21052 -6.33616 0.66283 0.81587 1.24757 1.42879 1.45954 1.53446 1.58110 1.73780 2.41386 2.63439 3.13175 3.43177 3.55626 3.62189 3.68291 3.75089 3.96514 4.01667 4.07593 4.16979 4.25087 4.30205 4.38823 4.51037 4.56432 4.59310 4.68710 4.71110 4.78330 4.81240 4.84034 4.85113 4.89162 4.95139 5.00170 5.01027 5.10591 5.15375 5.20882 5.39055 5.42040 5.53959 5.57044 5.60884 5.69967 5.76742 5.80847 6.00586 6.13469 6.18167 6.81592 7.36549 7.69155 8.90759 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.017911 B = 0.003302 C = 0.003171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.898070 B = 8477.133895 C = 8829.203852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.157 4.157 3 C -0.107 4.107 4 C 0.140 3.860 5 N -0.460 5.460 6 C 0.202 3.798 7 C -0.015 4.015 8 C 0.045 3.955 9 C -0.539 4.539 10 H 0.072 0.928 11 C 0.003 3.997 12 N -0.934 5.934 13 Si 0.967 3.033 14 H -0.268 1.268 15 H -0.287 1.287 16 H -0.261 1.261 17 N -0.332 5.332 18 N -0.354 5.354 19 C 0.348 3.652 20 N -0.434 5.434 21 C 0.087 3.913 22 C -0.175 4.175 23 C -0.108 4.108 24 C -0.116 4.116 25 C -0.073 4.073 26 C 0.069 3.931 27 H 0.124 0.876 28 H 0.097 0.903 29 H 0.070 0.930 30 H 0.059 0.941 31 H 0.082 0.918 32 H 0.095 0.905 33 H 0.110 0.890 34 H 0.087 0.913 35 H 0.093 0.907 36 H -0.006 1.006 37 H -0.018 1.018 38 H 0.263 0.737 39 H 0.087 0.913 40 H 0.036 0.964 41 H 0.133 0.867 42 H 0.066 0.934 43 H 0.075 0.925 44 H 0.077 0.923 45 H 0.093 0.907 46 H 0.103 0.897 47 H 0.042 0.958 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.692 22.061 3.242 24.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.158 4.158 3 C -0.164 4.164 4 C 0.019 3.981 5 N -0.152 5.152 6 C -0.067 4.067 7 C -0.055 4.055 8 C 0.007 3.993 9 C -0.577 4.577 10 H 0.091 0.909 11 C -0.195 4.195 12 N -0.574 5.574 13 Si 0.791 3.209 14 H -0.193 1.193 15 H -0.213 1.213 16 H -0.185 1.185 17 N -0.171 5.171 18 N -0.198 5.198 19 C -0.009 4.009 20 N -0.159 5.159 21 C -0.040 4.040 22 C -0.193 4.193 23 C -0.108 4.108 24 C -0.172 4.172 25 C -0.111 4.111 26 C -0.058 4.058 27 H 0.142 0.858 28 H 0.115 0.885 29 H 0.089 0.911 30 H 0.078 0.922 31 H 0.101 0.899 32 H 0.114 0.886 33 H 0.128 0.872 34 H 0.106 0.894 35 H 0.111 0.889 36 H 0.013 0.987 37 H 0.001 0.999 38 H 0.072 0.928 39 H 0.105 0.895 40 H 0.054 0.946 41 H 0.151 0.849 42 H 0.085 0.915 43 H 0.094 0.906 44 H 0.096 0.904 45 H 0.111 0.889 46 H 0.122 0.878 47 H 0.060 0.940 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 10.941 21.951 2.178 24.623 hybrid contribution -0.657 -1.536 1.010 1.952 sum 10.284 20.415 3.188 23.081 Atomic orbital electron populations 1.24099 0.95181 1.03299 0.97246 1.21870 0.95705 0.95046 1.03141 1.20778 1.00553 0.92830 1.02237 1.21068 1.02247 0.96628 0.78121 1.46330 1.17652 1.36750 1.14484 1.25303 0.99018 0.95364 0.87022 1.20165 0.87523 0.95659 1.02159 1.18822 0.96312 0.90653 0.93546 1.21537 0.93436 1.05191 1.37520 0.90949 1.25973 0.99923 0.97831 0.95814 1.70108 1.27471 1.17254 1.42529 0.85476 0.79108 0.77534 0.78802 1.19270 1.21310 1.18499 1.73898 1.03600 1.18522 1.21045 1.74416 1.15295 1.12013 1.18086 1.22709 0.91252 0.97512 0.89406 1.59327 1.10167 1.28076 1.18377 1.21084 0.92289 0.95035 0.95570 1.21952 0.97826 0.97314 1.02226 1.21244 0.97301 0.96016 0.96226 1.20927 0.94739 0.99882 1.01692 1.20564 0.97346 0.96860 0.96286 1.22192 0.95929 0.97159 0.90531 0.85814 0.88468 0.91057 0.92168 0.89907 0.88629 0.87207 0.89432 0.88876 0.98741 0.99930 0.92779 0.89519 0.94615 0.84941 0.91488 0.90650 0.90428 0.88911 0.87849 0.93956 0.90393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.61 13.91 67.78 0.94 -2.67 16 2 C -0.16 -3.70 5.64 -16.49 -0.09 -3.79 16 3 C -0.11 -2.05 10.05 71.24 0.72 -1.33 16 4 C 0.14 3.97 6.09 85.63 0.52 4.50 16 5 N -0.46 -16.14 2.79 -518.92 -1.45 -17.59 16 6 C 0.20 8.45 7.32 137.64 1.01 9.45 16 7 C -0.02 -0.65 5.26 29.85 0.16 -0.49 16 8 C 0.04 2.36 4.96 29.85 0.15 2.51 16 9 C -0.54 -29.47 9.11 25.60 0.23 -29.24 16 10 H 0.07 3.68 7.74 -2.91 -0.02 3.65 16 11 C 0.00 0.15 5.46 84.66 0.46 0.62 16 12 N -0.93 -56.40 13.29 21.45 0.28 -56.12 16 13 Si 0.97 43.05 29.54 68.60 2.03 45.08 16 14 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 15 H -0.29 -12.72 7.11 99.48 0.71 -12.02 16 16 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 17 N -0.33 -15.21 12.18 -49.54 -0.60 -15.82 16 18 N -0.35 -14.78 11.44 -58.00 -0.66 -15.45 16 19 C 0.35 12.11 6.85 260.11 1.78 13.89 16 20 N -0.43 -11.38 4.02 -710.52 -2.85 -14.23 16 21 C 0.09 2.08 5.56 85.39 0.47 2.55 16 22 C -0.17 -3.08 9.53 26.68 0.25 -2.83 16 23 C -0.11 -1.60 5.89 -15.40 -0.09 -1.69 16 24 C -0.12 -1.12 10.02 71.23 0.71 -0.41 16 25 C -0.07 -1.11 6.05 29.74 0.18 -0.93 16 26 C 0.07 1.59 5.02 86.26 0.43 2.02 16 27 H 0.12 2.24 8.05 -2.91 -0.02 2.21 16 28 H 0.10 2.39 6.98 -2.91 -0.02 2.37 16 29 H 0.07 1.43 7.27 -2.39 -0.02 1.42 16 30 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 32 H 0.10 2.97 7.55 -2.39 -0.02 2.95 16 33 H 0.11 2.70 6.47 -2.39 -0.02 2.68 16 34 H 0.09 3.68 8.14 -2.39 -0.02 3.66 16 35 H 0.09 3.46 7.01 -2.39 -0.02 3.44 16 36 H -0.01 -0.32 8.08 -2.39 -0.02 -0.34 16 37 H -0.02 -1.07 8.14 -2.39 -0.02 -1.09 16 38 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 39 H 0.09 2.02 6.51 -2.39 -0.02 2.01 16 40 H 0.04 1.01 8.10 -2.39 -0.02 0.99 16 41 H 0.13 1.89 7.63 -2.91 -0.02 1.87 16 42 H 0.07 0.60 7.62 -2.39 -0.02 0.58 16 43 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 44 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 45 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 46 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 47 H 0.04 1.09 8.08 -2.39 -0.02 1.08 16 48 H 0.08 1.95 7.98 -2.39 -0.02 1.94 16 Total: -1.00 -70.85 389.80 5.51 -65.34 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: 0.93 Total: 16.62 kcal Atomic # 6 Polarization: -15.68 SS G_CDS: 7.84 Total: -7.84 kcal Atomic # 7 Polarization: -113.92 SS G_CDS: -5.28 Total: -119.20 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Total: -70.85 5.51 -65.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341983134.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.705 kcal (2) G-P(sol) polarization free energy of solvation -70.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds