Wall clock time and date at job start Tue Mar 31 2020 11:30:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50702 * 120.00468 * 2 1 4 4 N 1.46895 * 109.47415 * 124.60043 * 3 2 1 5 5 C 1.46895 * 111.00289 * 169.40322 * 4 3 2 6 6 C 1.50707 * 109.46959 * 300.43212 * 5 4 3 7 7 C 1.30999 * 120.00550 * 124.99854 * 6 5 4 8 8 C 1.38586 * 110.99696 * 293.35343 * 4 3 2 9 9 N 1.31215 * 126.47316 * 4.36011 * 8 4 3 10 10 N 1.28532 * 109.86127 * 180.02562 * 9 8 4 11 11 C 1.30296 * 110.04966 * 359.97438 * 10 9 8 12 12 C 1.50705 * 126.34529 * 180.02562 * 11 10 9 13 13 C 1.52998 * 109.47145 * 84.89493 * 12 11 10 14 14 C 1.50702 * 109.47073 * 184.96417 * 13 12 11 15 15 H 1.07997 * 119.99905 * 359.97438 * 14 13 12 16 16 C 1.37872 * 120.00095 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99959 * 359.97438 * 16 14 13 18 18 Si 1.86807 * 120.00092 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47001 * 89.99716 * 18 16 14 20 20 H 1.48496 * 109.47099 * 209.99445 * 18 16 14 21 21 H 1.48496 * 109.46758 * 329.99995 * 18 16 14 22 22 N 1.36448 * 126.47097 * 184.38294 * 8 4 3 23 23 C 1.46500 * 127.13979 * 359.97438 * 22 8 4 24 24 C 1.50700 * 109.47529 * 101.17817 * 23 22 8 25 25 C 1.31003 * 119.99631 * 96.13037 * 24 23 22 26 26 C 1.50704 * 120.00314 * 276.13720 * 24 23 22 27 27 H 1.08005 * 119.99618 * 359.97438 * 1 2 3 28 28 H 1.07998 * 120.00054 * 180.02562 * 1 2 3 29 29 H 1.08005 * 119.99690 * 179.97438 * 2 1 3 30 30 H 1.09005 * 109.46612 * 4.59568 * 3 2 1 31 31 H 1.09005 * 109.47088 * 244.60420 * 3 2 1 32 32 H 1.09005 * 109.47540 * 60.42180 * 5 4 3 33 33 H 1.08997 * 109.47543 * 180.42906 * 5 4 3 34 34 H 1.08001 * 119.99278 * 304.99833 * 6 5 4 35 35 H 1.07989 * 120.00048 * 180.02562 * 7 6 5 36 36 H 1.07998 * 119.99290 * 359.97438 * 7 6 5 37 37 H 1.09004 * 109.46945 * 204.89489 * 12 11 10 38 38 H 1.08993 * 109.47131 * 324.89205 * 12 11 10 39 39 H 1.09005 * 109.47190 * 304.95790 * 13 12 11 40 40 H 1.08992 * 109.47679 * 64.96206 * 13 12 11 41 41 H 0.97006 * 120.00073 * 180.02562 * 17 16 14 42 42 H 1.08996 * 109.47661 * 221.18069 * 23 22 8 43 43 H 1.09008 * 109.47100 * 341.18182 * 23 22 8 44 44 H 1.08006 * 119.99542 * 180.02562 * 25 24 23 45 45 H 1.07999 * 120.00302 * 0.02562 * 25 24 23 46 46 H 1.08999 * 109.47248 * 65.33083 * 26 24 23 47 47 H 1.08996 * 109.46989 * 185.33924 * 26 24 23 48 48 H 1.08999 * 109.46580 * 305.33963 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9895 1.3359 1.1400 5 6 3.9157 2.4713 1.0354 6 6 4.7098 2.3560 -0.2402 7 6 4.7187 3.3459 -1.0981 8 6 2.2981 1.3680 2.3406 9 7 0.9972 1.2915 2.4938 10 7 0.7002 1.3535 3.7428 11 6 1.7851 1.4716 4.4546 12 6 1.8613 1.5741 5.9562 13 6 1.8540 0.1702 6.5643 14 6 1.8072 0.2739 8.0670 15 1 1.7854 1.2441 8.5409 16 6 1.7934 -0.8698 8.8369 17 7 1.8206 -2.0513 8.2598 18 14 1.7362 -0.7413 10.6996 19 1 0.3216 -0.7187 11.1510 20 1 2.4280 -1.9111 11.2980 21 1 2.4132 0.5081 11.1306 22 7 2.8416 1.4854 3.5866 23 6 4.2623 1.6018 3.9246 24 6 4.5928 3.0427 4.2172 25 6 4.6062 3.4733 5.4544 26 6 4.9077 3.9882 3.0867 27 1 -0.5400 0.9354 0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 1.8500 -0.9354 0.0004 30 1 1.3581 2.1319 0.0823 31 1 2.6270 1.3993 -0.9284 32 1 3.3494 3.4027 1.0278 33 1 4.5949 2.4659 1.8879 34 1 5.2716 1.4570 -0.4471 35 1 5.2874 3.2630 -2.0124 36 1 4.1565 4.2446 -0.8914 37 1 2.7802 2.0878 6.2391 38 1 1.0030 2.1348 6.3262 39 1 0.9787 -0.3746 6.2103 40 1 2.7578 -0.3603 6.2647 41 1 1.8105 -2.8560 8.8014 42 1 4.4778 0.9939 4.8033 43 1 4.8651 1.2540 3.0855 44 1 4.8427 4.5061 5.6640 45 1 4.3809 2.7957 6.2646 46 1 4.0220 4.1191 2.4651 47 1 5.2120 4.9525 3.4937 48 1 5.7171 3.5766 2.4837 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342088154.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:03 Heat of formation + Delta-G solvation = 161.623714 kcal Electronic energy + Delta-G solvation = -27354.750096 eV Core-core repulsion = 23834.850319 eV Total energy + Delta-G solvation = -3519.899777 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.61312 -38.57798 -37.06142 -34.39250 -34.07201 -33.40959 -32.56710 -31.48101 -28.68935 -28.26417 -27.13018 -26.36570 -25.25162 -24.37413 -21.83477 -20.92570 -20.33440 -20.06109 -19.46143 -18.81421 -17.14098 -16.49993 -16.30326 -15.96753 -15.73359 -15.17307 -14.67833 -14.51492 -14.42692 -14.14294 -13.83289 -13.61197 -13.37056 -13.12299 -12.95927 -12.56153 -12.30844 -12.17411 -11.96194 -11.79107 -11.63809 -11.31540 -11.10074 -11.03624 -10.94154 -10.87864 -10.67403 -10.33309 -9.98899 -9.86999 -9.82400 -9.70186 -9.38430 -9.26445 -9.19657 -9.07465 -8.38896 -7.78241 -6.03193 -4.07469 1.69276 1.85310 2.27172 2.48100 2.86134 3.30820 3.37067 3.38203 3.40766 3.84582 4.42586 4.46620 4.50316 4.53105 4.68632 4.86276 4.97065 4.99865 5.11245 5.21728 5.22169 5.25131 5.32666 5.36864 5.40256 5.45700 5.54099 5.59501 5.65661 5.69850 5.75363 5.85620 6.08565 6.15765 6.23080 6.28109 6.31174 6.46617 6.47801 6.61095 6.72290 6.75411 6.85030 6.93443 7.07534 7.48885 7.58737 7.73327 7.94626 8.31942 8.98757 9.32501 9.56994 11.07829 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.015408 B = 0.003779 C = 0.003220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.776748 B = 7407.946159 C = 8694.568540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.158 4.158 3 C 0.103 3.897 4 N -0.444 5.444 5 C 0.050 3.950 6 C -0.148 4.148 7 C -0.184 4.184 8 C 0.336 3.664 9 N -0.311 5.311 10 N -0.295 5.295 11 C 0.213 3.787 12 C -0.034 4.034 13 C 0.032 3.968 14 C -0.523 4.523 15 H 0.058 0.942 16 C 0.060 3.940 17 N -0.891 5.891 18 Si 0.893 3.107 19 H -0.279 1.279 20 H -0.287 1.287 21 H -0.273 1.273 22 N -0.477 5.477 23 C 0.140 3.860 24 C -0.169 4.169 25 C -0.148 4.148 26 C -0.128 4.128 27 H 0.096 0.904 28 H 0.094 0.906 29 H 0.107 0.893 30 H 0.054 0.946 31 H 0.090 0.910 32 H 0.051 0.949 33 H 0.114 0.886 34 H 0.119 0.881 35 H 0.103 0.897 36 H 0.096 0.904 37 H 0.070 0.930 38 H 0.086 0.914 39 H 0.026 0.974 40 H 0.013 0.987 41 H 0.261 0.739 42 H 0.107 0.893 43 H 0.101 0.899 44 H 0.105 0.895 45 H 0.116 0.884 46 H 0.069 0.931 47 H 0.065 0.935 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.211 11.570 -17.414 22.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.177 4.177 3 C -0.023 4.023 4 N -0.167 5.167 5 C -0.075 4.075 6 C -0.167 4.167 7 C -0.221 4.221 8 C -0.021 4.021 9 N -0.155 5.155 10 N -0.133 5.133 11 C -0.054 4.054 12 C -0.074 4.074 13 C -0.006 4.006 14 C -0.562 4.562 15 H 0.076 0.924 16 C -0.142 4.142 17 N -0.530 5.530 18 Si 0.721 3.279 19 H -0.205 1.205 20 H -0.213 1.213 21 H -0.198 1.198 22 N -0.173 5.173 23 C 0.018 3.982 24 C -0.170 4.170 25 C -0.185 4.185 26 C -0.184 4.184 27 H 0.114 0.886 28 H 0.112 0.888 29 H 0.125 0.875 30 H 0.072 0.928 31 H 0.108 0.892 32 H 0.069 0.931 33 H 0.131 0.869 34 H 0.137 0.863 35 H 0.121 0.879 36 H 0.114 0.886 37 H 0.089 0.911 38 H 0.104 0.896 39 H 0.044 0.956 40 H 0.032 0.968 41 H 0.071 0.929 42 H 0.125 0.875 43 H 0.119 0.881 44 H 0.123 0.877 45 H 0.134 0.866 46 H 0.088 0.912 47 H 0.084 0.916 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 8.027 10.827 -17.775 22.307 hybrid contribution 1.038 0.487 1.366 1.783 sum 9.064 11.314 -16.409 21.895 Atomic orbital electron populations 1.23701 0.95698 1.01561 0.97563 1.22481 0.95733 0.97148 1.02328 1.21160 0.93255 0.96918 0.90981 1.58758 1.18231 1.41257 0.98411 1.22529 0.94722 0.90938 0.99352 1.22833 0.99269 0.99735 0.94838 1.23921 1.01174 0.98423 0.98611 1.22487 0.89849 1.05349 0.84375 1.74589 1.07390 1.22496 1.11067 1.74018 1.23108 1.19341 0.96841 1.25472 0.81978 1.01525 0.96414 1.20538 1.02698 1.03174 0.81007 1.19063 0.97872 0.88499 0.95168 1.21132 1.51403 0.92632 0.90998 0.92366 1.25008 0.95122 0.95369 0.98727 1.69977 1.50153 0.97392 1.35469 0.86577 0.78249 0.77563 0.85513 1.20545 1.21259 1.19817 1.46220 1.08193 1.57265 1.05616 1.20893 0.78516 0.94846 1.03979 1.21815 1.03560 0.95286 0.96368 1.24171 0.96457 1.01605 0.96312 1.21282 1.01611 0.98184 0.97334 0.88616 0.88754 0.87534 0.92809 0.89208 0.93069 0.86870 0.86266 0.87855 0.88602 0.91139 0.89576 0.95575 0.96847 0.92888 0.87482 0.88077 0.87712 0.86641 0.91237 0.91565 0.91046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 13.49 29.01 0.39 -1.59 16 2 C -0.16 -2.13 8.55 -36.02 -0.31 -2.44 16 3 C 0.10 1.27 4.94 -4.98 -0.02 1.24 16 4 N -0.44 -5.92 4.56 -177.25 -0.81 -6.73 16 5 C 0.05 0.51 3.50 -4.98 -0.02 0.50 16 6 C -0.15 -1.18 8.14 -36.02 -0.29 -1.47 16 7 C -0.18 -1.22 14.32 29.01 0.42 -0.80 16 8 C 0.34 5.73 6.90 -318.88 -2.20 3.53 16 9 N -0.31 -6.22 9.72 30.31 0.29 -5.92 16 10 N -0.30 -6.55 12.18 32.99 0.40 -6.15 16 11 C 0.21 4.33 7.31 -154.01 -1.13 3.20 16 12 C -0.03 -0.71 5.57 -27.88 -0.16 -0.87 16 13 C 0.03 0.83 4.96 -27.88 -0.14 0.69 16 14 C -0.52 -14.35 9.11 -34.44 -0.31 -14.66 16 15 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 16 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 17 N -0.89 -26.69 13.29 55.43 0.74 -25.95 16 18 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 22 N -0.48 -8.11 2.79 -115.36 -0.32 -8.43 16 23 C 0.14 1.87 5.22 -5.19 -0.03 1.84 16 24 C -0.17 -1.90 5.62 -101.07 -0.57 -2.47 16 25 C -0.15 -1.66 12.98 29.01 0.38 -1.28 16 26 C -0.13 -1.13 8.12 36.01 0.29 -0.84 16 27 H 0.10 1.29 7.84 -52.48 -0.41 0.87 16 28 H 0.09 1.19 8.06 -52.49 -0.42 0.76 16 29 H 0.11 1.43 8.06 -52.48 -0.42 1.01 16 30 H 0.05 0.71 7.60 -51.93 -0.39 0.31 16 31 H 0.09 0.89 6.73 -51.93 -0.35 0.54 16 32 H 0.05 0.54 6.48 -51.93 -0.34 0.21 16 33 H 0.11 1.12 1.59 -51.93 -0.08 1.03 16 34 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 35 H 0.10 0.55 8.06 -52.49 -0.42 0.12 16 36 H 0.10 0.62 7.84 -52.49 -0.41 0.21 16 37 H 0.07 1.28 4.78 -51.93 -0.25 1.03 16 38 H 0.09 1.79 8.14 -51.93 -0.42 1.37 16 39 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 41 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 42 H 0.11 1.52 7.97 -51.93 -0.41 1.10 16 43 H 0.10 1.16 6.46 -51.92 -0.34 0.82 16 44 H 0.10 0.97 7.84 -52.48 -0.41 0.56 16 45 H 0.12 1.46 6.12 -52.49 -0.32 1.13 16 46 H 0.07 0.68 5.31 -51.93 -0.28 0.40 16 47 H 0.07 0.51 7.79 -51.93 -0.40 0.11 16 48 H 0.07 0.53 7.09 -51.93 -0.37 0.16 16 LS Contribution 381.74 15.07 5.75 5.75 Total: -1.00 -32.80 381.74 -10.03 -42.83 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -7.27 Total: 2.19 kcal Atomic # 6 Polarization: -10.04 SS G_CDS: -3.79 Total: -13.83 kcal Atomic # 7 Polarization: -53.48 SS G_CDS: 0.30 Total: -53.18 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.80 -10.03 -42.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342088154.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 204.449 kcal (2) G-P(sol) polarization free energy of solvation -32.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 171.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 161.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds