Wall clock time and date at job start Tue Mar 31 2020 11:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50702 * 120.00468 * 2 1 4 4 N 1.46895 * 109.47415 * 124.60043 * 3 2 1 5 5 C 1.46895 * 111.00289 * 169.40322 * 4 3 2 6 6 C 1.50707 * 109.46959 * 300.43212 * 5 4 3 7 7 C 1.30999 * 120.00550 * 124.99854 * 6 5 4 8 8 C 1.38586 * 110.99696 * 293.35343 * 4 3 2 9 9 N 1.31215 * 126.47316 * 4.36011 * 8 4 3 10 10 N 1.28532 * 109.86127 * 180.02562 * 9 8 4 11 11 C 1.30296 * 110.04966 * 359.97438 * 10 9 8 12 12 C 1.50705 * 126.34529 * 180.02562 * 11 10 9 13 13 C 1.52998 * 109.47145 * 84.89493 * 12 11 10 14 14 C 1.50702 * 109.47073 * 184.96417 * 13 12 11 15 15 H 1.07997 * 119.99905 * 359.97438 * 14 13 12 16 16 C 1.37872 * 120.00095 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99959 * 359.97438 * 16 14 13 18 18 Si 1.86807 * 120.00092 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47001 * 89.99716 * 18 16 14 20 20 H 1.48496 * 109.47099 * 209.99445 * 18 16 14 21 21 H 1.48496 * 109.46758 * 329.99995 * 18 16 14 22 22 N 1.36448 * 126.47097 * 184.38294 * 8 4 3 23 23 C 1.46500 * 127.13979 * 359.97438 * 22 8 4 24 24 C 1.50700 * 109.47529 * 101.17817 * 23 22 8 25 25 C 1.31003 * 119.99631 * 96.13037 * 24 23 22 26 26 C 1.50704 * 120.00314 * 276.13720 * 24 23 22 27 27 H 1.08005 * 119.99618 * 359.97438 * 1 2 3 28 28 H 1.07998 * 120.00054 * 180.02562 * 1 2 3 29 29 H 1.08005 * 119.99690 * 179.97438 * 2 1 3 30 30 H 1.09005 * 109.46612 * 4.59568 * 3 2 1 31 31 H 1.09005 * 109.47088 * 244.60420 * 3 2 1 32 32 H 1.09005 * 109.47540 * 60.42180 * 5 4 3 33 33 H 1.08997 * 109.47543 * 180.42906 * 5 4 3 34 34 H 1.08001 * 119.99278 * 304.99833 * 6 5 4 35 35 H 1.07989 * 120.00048 * 180.02562 * 7 6 5 36 36 H 1.07998 * 119.99290 * 359.97438 * 7 6 5 37 37 H 1.09004 * 109.46945 * 204.89489 * 12 11 10 38 38 H 1.08993 * 109.47131 * 324.89205 * 12 11 10 39 39 H 1.09005 * 109.47190 * 304.95790 * 13 12 11 40 40 H 1.08992 * 109.47679 * 64.96206 * 13 12 11 41 41 H 0.97006 * 120.00073 * 180.02562 * 17 16 14 42 42 H 1.08996 * 109.47661 * 221.18069 * 23 22 8 43 43 H 1.09008 * 109.47100 * 341.18182 * 23 22 8 44 44 H 1.08006 * 119.99542 * 180.02562 * 25 24 23 45 45 H 1.07999 * 120.00302 * 0.02562 * 25 24 23 46 46 H 1.08999 * 109.47248 * 65.33083 * 26 24 23 47 47 H 1.08996 * 109.46989 * 185.33924 * 26 24 23 48 48 H 1.08999 * 109.46580 * 305.33963 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9895 1.3359 1.1400 5 6 3.9157 2.4713 1.0354 6 6 4.7098 2.3560 -0.2402 7 6 4.7187 3.3459 -1.0981 8 6 2.2981 1.3680 2.3406 9 7 0.9972 1.2915 2.4938 10 7 0.7002 1.3535 3.7428 11 6 1.7851 1.4716 4.4546 12 6 1.8613 1.5741 5.9562 13 6 1.8540 0.1702 6.5643 14 6 1.8072 0.2739 8.0670 15 1 1.7854 1.2441 8.5409 16 6 1.7934 -0.8698 8.8369 17 7 1.8206 -2.0513 8.2598 18 14 1.7362 -0.7413 10.6996 19 1 0.3216 -0.7187 11.1510 20 1 2.4280 -1.9111 11.2980 21 1 2.4132 0.5081 11.1306 22 7 2.8416 1.4854 3.5866 23 6 4.2623 1.6018 3.9246 24 6 4.5928 3.0427 4.2172 25 6 4.6062 3.4733 5.4544 26 6 4.9077 3.9882 3.0867 27 1 -0.5400 0.9354 0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 1.8500 -0.9354 0.0004 30 1 1.3581 2.1319 0.0823 31 1 2.6270 1.3993 -0.9284 32 1 3.3494 3.4027 1.0278 33 1 4.5949 2.4659 1.8879 34 1 5.2716 1.4570 -0.4471 35 1 5.2874 3.2630 -2.0124 36 1 4.1565 4.2446 -0.8914 37 1 2.7802 2.0878 6.2391 38 1 1.0030 2.1348 6.3262 39 1 0.9787 -0.3746 6.2103 40 1 2.7578 -0.3603 6.2647 41 1 1.8105 -2.8560 8.8014 42 1 4.4778 0.9939 4.8033 43 1 4.8651 1.2540 3.0855 44 1 4.8427 4.5061 5.6640 45 1 4.3809 2.7957 6.2646 46 1 4.0220 4.1191 2.4651 47 1 5.2120 4.9525 3.4937 48 1 5.7171 3.5766 2.4837 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342088154.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:02 Heat of formation + Delta-G solvation = 145.269357 kcal Electronic energy + Delta-G solvation = -27355.459274 eV Core-core repulsion = 23834.850319 eV Total energy + Delta-G solvation = -3520.608955 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.02924 -39.61664 -38.12008 -36.00240 -35.20088 -34.57294 -34.00113 -33.04860 -30.16469 -29.22338 -28.30854 -27.29635 -27.05831 -25.44876 -23.73072 -22.15086 -21.74652 -20.78897 -20.59772 -19.84788 -18.58874 -18.26712 -17.38974 -17.20664 -16.86023 -16.48550 -16.10394 -15.63434 -15.49052 -15.22774 -14.94361 -14.91177 -14.60163 -14.44599 -14.20497 -13.89884 -13.43348 -13.32580 -13.08182 -12.91235 -12.88037 -12.78325 -12.59416 -12.42699 -12.40103 -12.07626 -11.94600 -11.77921 -11.73824 -11.40068 -11.27726 -11.14880 -10.73338 -10.57683 -10.49863 -10.23295 -10.06344 -9.16427 -8.20059 -6.32929 0.68176 0.87264 1.19242 1.42587 1.44674 1.47487 1.55193 1.70408 1.90375 2.41919 2.74266 3.13980 3.43988 3.56865 3.61943 3.73855 3.88297 3.92169 3.98103 4.14306 4.16677 4.20953 4.37530 4.45476 4.47861 4.57918 4.60702 4.64764 4.71603 4.74124 4.81177 4.81720 4.96825 4.98440 5.03014 5.04430 5.08913 5.43102 5.45821 5.50262 5.55066 5.60225 5.69517 5.71906 5.76486 5.78364 5.86570 5.94803 6.15432 6.21892 6.82971 7.37185 7.83638 8.92076 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.015408 B = 0.003779 C = 0.003220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.776748 B = 7407.946159 C = 8694.568540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.166 4.166 3 C 0.105 3.895 4 N -0.442 5.442 5 C 0.052 3.948 6 C -0.163 4.163 7 C -0.163 4.163 8 C 0.351 3.649 9 N -0.341 5.341 10 N -0.333 5.333 11 C 0.196 3.804 12 C -0.017 4.017 13 C 0.045 3.955 14 C -0.538 4.538 15 H 0.073 0.927 16 C 0.000 4.000 17 N -0.935 5.935 18 Si 0.968 3.032 19 H -0.276 1.276 20 H -0.284 1.284 21 H -0.254 1.254 22 N -0.473 5.473 23 C 0.132 3.868 24 C -0.170 4.170 25 C -0.150 4.150 26 C -0.123 4.123 27 H 0.093 0.907 28 H 0.097 0.903 29 H 0.105 0.895 30 H 0.045 0.955 31 H 0.120 0.880 32 H 0.051 0.949 33 H 0.117 0.883 34 H 0.125 0.875 35 H 0.122 0.878 36 H 0.099 0.901 37 H 0.097 0.903 38 H 0.083 0.917 39 H -0.020 1.020 40 H -0.009 1.009 41 H 0.263 0.737 42 H 0.093 0.907 43 H 0.122 0.878 44 H 0.129 0.871 45 H 0.097 0.903 46 H 0.061 0.939 47 H 0.082 0.918 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.333 13.708 -18.039 25.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.184 4.184 3 C -0.020 4.020 4 N -0.166 5.166 5 C -0.073 4.073 6 C -0.181 4.181 7 C -0.201 4.201 8 C -0.006 4.006 9 N -0.185 5.185 10 N -0.171 5.171 11 C -0.073 4.073 12 C -0.057 4.057 13 C 0.006 3.994 14 C -0.576 4.576 15 H 0.091 0.909 16 C -0.197 4.197 17 N -0.575 5.575 18 Si 0.792 3.208 19 H -0.202 1.202 20 H -0.210 1.210 21 H -0.178 1.178 22 N -0.168 5.168 23 C 0.011 3.989 24 C -0.171 4.171 25 C -0.188 4.188 26 C -0.179 4.179 27 H 0.111 0.889 28 H 0.116 0.884 29 H 0.123 0.877 30 H 0.063 0.937 31 H 0.138 0.862 32 H 0.069 0.931 33 H 0.135 0.865 34 H 0.143 0.857 35 H 0.140 0.860 36 H 0.117 0.883 37 H 0.115 0.885 38 H 0.101 0.899 39 H -0.001 1.001 40 H 0.010 0.990 41 H 0.072 0.928 42 H 0.111 0.889 43 H 0.140 0.860 44 H 0.147 0.853 45 H 0.115 0.885 46 H 0.080 0.920 47 H 0.101 0.899 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 10.176 12.994 -18.416 24.729 hybrid contribution 0.434 -0.195 1.416 1.494 sum 10.610 12.799 -17.000 23.778 Atomic orbital electron populations 1.23766 0.95981 1.01658 0.97839 1.22638 0.95877 0.97810 1.02113 1.21221 0.93309 0.95809 0.91669 1.58927 1.17986 1.42696 0.96997 1.22644 0.94051 0.89450 1.01140 1.22696 1.00282 1.00856 0.94314 1.24124 0.99804 0.97725 0.98411 1.22923 0.89423 1.02647 0.85590 1.74492 1.09186 1.24658 1.10158 1.73907 1.24763 1.20290 0.98103 1.25174 0.82856 1.02968 0.96319 1.20227 1.03922 0.99998 0.81540 1.18816 0.94591 0.90808 0.95155 1.21577 1.50789 0.93352 0.91841 0.90916 1.26011 0.94531 0.94871 1.04331 1.70135 1.51408 0.98333 1.37619 0.85399 0.78382 0.78262 0.78728 1.20209 1.20993 1.17797 1.46324 1.08940 1.56483 1.05027 1.21181 0.76733 0.96670 1.04285 1.21868 1.03594 0.94278 0.97385 1.24267 0.96271 1.02503 0.95751 1.21283 1.01844 0.98351 0.96451 0.88891 0.88424 0.87664 0.93652 0.86214 0.93120 0.86548 0.85689 0.86006 0.88287 0.88496 0.89859 1.00134 0.99042 0.92825 0.88913 0.86016 0.85271 0.88518 0.92039 0.89924 0.89187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.23 13.49 67.78 0.91 -3.31 16 2 C -0.17 -4.42 8.55 25.65 0.22 -4.20 16 3 C 0.11 2.46 4.94 85.56 0.42 2.89 16 4 N -0.44 -11.25 4.56 -714.69 -3.26 -14.51 16 5 C 0.05 0.94 3.50 85.56 0.30 1.23 16 6 C -0.16 -2.06 8.14 25.65 0.21 -1.85 16 7 C -0.16 -1.54 14.32 67.78 0.97 -0.57 16 8 C 0.35 11.98 6.90 260.11 1.80 13.78 16 9 N -0.34 -13.96 9.72 -58.00 -0.56 -14.53 16 10 N -0.33 -15.35 12.18 -49.53 -0.60 -15.96 16 11 C 0.20 8.20 7.31 137.64 1.01 9.20 16 12 C -0.02 -0.74 5.57 29.85 0.17 -0.57 16 13 C 0.04 2.41 4.96 29.85 0.15 2.55 16 14 C -0.54 -29.99 9.11 25.60 0.23 -29.76 16 15 H 0.07 3.76 7.74 -2.91 -0.02 3.74 16 16 C 0.00 0.03 5.46 84.65 0.46 0.49 16 17 N -0.93 -57.66 13.29 21.45 0.28 -57.37 16 18 Si 0.97 43.71 29.54 68.60 2.03 45.74 16 19 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 20 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 21 H -0.25 -10.62 7.11 99.48 0.71 -9.92 16 22 N -0.47 -16.16 2.79 -518.90 -1.45 -17.61 16 23 C 0.13 3.44 5.22 85.63 0.45 3.89 16 24 C -0.17 -3.52 5.62 -16.49 -0.09 -3.62 16 25 C -0.15 -3.11 12.98 67.78 0.88 -2.23 16 26 C -0.12 -1.81 8.12 71.24 0.58 -1.23 16 27 H 0.09 2.57 7.84 -2.91 -0.02 2.54 16 28 H 0.10 2.53 8.06 -2.91 -0.02 2.51 16 29 H 0.11 2.81 8.06 -2.91 -0.02 2.79 16 30 H 0.05 1.16 7.60 -2.38 -0.02 1.14 16 31 H 0.12 2.07 6.73 -2.38 -0.02 2.06 16 32 H 0.05 0.95 6.48 -2.38 -0.02 0.94 16 33 H 0.12 2.00 1.59 -2.39 0.00 2.00 16 34 H 0.13 1.48 8.06 -2.91 -0.02 1.46 16 35 H 0.12 0.76 8.06 -2.92 -0.02 0.73 16 36 H 0.10 0.91 7.84 -2.91 -0.02 0.88 16 37 H 0.10 3.55 4.78 -2.39 -0.01 3.54 16 38 H 0.08 3.56 8.14 -2.39 -0.02 3.54 16 39 H -0.02 -1.24 8.14 -2.38 -0.02 -1.26 16 40 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 41 H 0.26 15.26 8.31 -92.70 -0.77 14.49 16 42 H 0.09 2.68 7.97 -2.39 -0.02 2.66 16 43 H 0.12 2.61 6.46 -2.38 -0.02 2.59 16 44 H 0.13 2.04 7.84 -2.91 -0.02 2.01 16 45 H 0.10 2.37 6.12 -2.91 -0.02 2.35 16 46 H 0.06 1.04 5.31 -2.39 -0.01 1.02 16 47 H 0.08 0.98 7.79 -2.39 -0.02 0.96 16 48 H 0.09 1.00 7.09 -2.39 -0.02 0.98 16 Total: -1.00 -73.87 381.74 6.04 -67.83 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: 0.94 Total: 19.73 kcal Atomic # 6 Polarization: -21.97 SS G_CDS: 8.66 Total: -13.32 kcal Atomic # 7 Polarization: -114.39 SS G_CDS: -5.59 Total: -119.98 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -73.87 6.04 -67.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342088154.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 213.099 kcal (2) G-P(sol) polarization free energy of solvation -73.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 145.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds