Wall clock time and date at job start Tue Mar 31 2020 11:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50696 * 120.00179 * 2 1 4 4 N 1.46500 * 109.47194 * 124.61140 * 3 2 1 5 5 C 1.36457 * 127.13783 * 83.72780 * 4 3 2 6 6 N 1.38580 * 126.47032 * 359.97438 * 5 4 3 7 7 C 1.47168 * 110.99908 * 73.80544 * 6 5 4 8 8 C 1.52994 * 108.58889 * 199.59250 * 7 6 5 9 9 C 1.52979 * 109.63235 * 305.87222 * 8 7 6 10 10 H 1.08991 * 115.39270 * 232.09024 * 9 8 7 11 11 C 1.53597 * 115.98308 * 89.09564 * 9 8 7 12 12 C 1.52359 * 59.75169 * 249.57399 * 11 9 8 13 13 H 1.09001 * 116.25673 * 253.29946 * 12 11 9 14 14 C 1.46736 * 110.99953 * 196.90351 * 6 5 4 15 15 N 1.31220 * 107.05496 * 180.23795 * 5 4 3 16 16 N 1.28522 * 109.85985 * 359.56456 * 15 5 4 17 17 C 1.30294 * 110.05486 * 0.44668 * 16 15 5 18 18 C 1.50702 * 126.34760 * 179.69537 * 17 16 15 19 19 C 1.52995 * 109.47384 * 355.50880 * 18 17 16 20 20 C 1.52999 * 109.47137 * 115.51553 * 18 17 16 21 21 C 1.50704 * 109.46920 * 235.51324 * 18 17 16 22 22 H 1.08003 * 120.00143 * 359.97438 * 21 18 17 23 23 C 1.37879 * 119.99733 * 180.02562 * 21 18 17 24 24 N 1.31510 * 120.00189 * 359.97438 * 23 21 18 25 25 Si 1.86802 * 119.99868 * 179.97438 * 23 21 18 26 26 H 1.48498 * 109.47140 * 89.99668 * 25 23 21 27 27 H 1.48500 * 109.47455 * 209.99608 * 25 23 21 28 28 H 1.48507 * 109.47155 * 329.99778 * 25 23 21 29 29 H 1.07999 * 120.00083 * 359.97438 * 1 2 3 30 30 H 1.08001 * 120.00001 * 180.02562 * 1 2 3 31 31 H 1.08008 * 120.00094 * 179.97438 * 2 1 3 32 32 H 1.09006 * 109.47263 * 4.61628 * 3 2 1 33 33 H 1.09002 * 109.47138 * 244.61206 * 3 2 1 34 34 H 1.08999 * 109.61474 * 319.31990 * 7 6 5 35 35 H 1.08993 * 109.61823 * 79.67779 * 7 6 5 36 36 H 1.09001 * 109.44228 * 185.82561 * 8 7 6 37 37 H 1.08997 * 109.44632 * 65.92107 * 8 7 6 38 38 H 1.08999 * 117.52830 * 356.98980 * 11 9 8 39 39 H 1.08999 * 117.52558 * 142.09622 * 11 9 8 40 40 H 1.09004 * 109.30055 * 59.85989 * 14 6 5 41 41 H 1.09003 * 109.29783 * 300.48178 * 14 6 5 42 42 H 1.09005 * 109.46984 * 54.16909 * 19 18 17 43 43 H 1.08994 * 109.47328 * 174.16817 * 19 18 17 44 44 H 1.08994 * 109.47674 * 294.17538 * 19 18 17 45 45 H 1.09002 * 109.47349 * 67.80428 * 20 18 17 46 46 H 1.09002 * 109.47313 * 187.80357 * 20 18 17 47 47 H 1.08999 * 109.47159 * 307.79987 * 20 18 17 48 48 H 0.97006 * 120.00263 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9871 1.3357 1.1368 5 6 4.2407 0.7996 1.1944 6 7 4.8912 0.1148 0.1804 7 6 5.3399 1.0369 -0.8752 8 6 5.5922 0.2317 -2.1514 9 6 6.5610 -0.9140 -1.8531 10 1 7.4261 -0.9783 -2.5129 11 6 5.9222 -2.2331 -1.3935 12 6 6.7358 -1.3931 -0.4169 13 1 7.7210 -1.7784 -0.1540 14 6 6.0278 -0.6494 0.7069 15 7 4.7115 1.0501 2.3934 16 7 3.8433 1.7088 3.0746 17 6 2.7722 1.9078 2.3600 18 6 1.5268 2.6333 2.8003 19 6 1.6553 3.0182 4.2754 20 6 1.3478 3.8972 1.9569 21 6 0.3310 1.7344 2.6181 22 1 0.4598 0.7377 2.2227 23 6 -0.9278 2.1849 2.9553 24 7 -1.0848 3.3988 3.4364 25 14 -2.4101 1.0710 2.7289 26 1 -2.6312 0.2831 3.9681 27 1 -3.6115 1.8969 2.4466 28 1 -2.1662 0.1473 1.5920 29 1 -0.5400 0.9353 0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 1.8500 -0.9354 0.0004 32 1 1.3581 2.1319 0.0827 33 1 2.6268 1.3994 -0.9284 34 1 4.5683 1.7842 -1.0606 35 1 6.2600 1.5307 -0.5629 36 1 6.0233 0.8827 -2.9119 37 1 4.6492 -0.1761 -2.5155 38 1 4.8402 -2.2503 -1.2631 39 1 6.3672 -3.1606 -1.7536 40 1 5.6686 -1.3675 1.4441 41 1 6.7299 0.0332 1.1858 42 1 2.5763 3.5819 4.4249 43 1 0.8027 3.6317 4.5665 44 1 1.6788 2.1156 4.8858 45 1 1.1182 3.6184 0.9285 46 1 0.5300 4.4924 2.3632 47 1 2.2678 4.4815 1.9782 48 1 -1.9704 3.7159 3.6733 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342242214.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:20 Heat of formation + Delta-G solvation = 136.388651 kcal Electronic energy + Delta-G solvation = -28369.644590 eV Core-core repulsion = 24848.650539 eV Total energy + Delta-G solvation = -3520.994051 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.25911 -39.65883 -36.11541 -35.62787 -34.64402 -32.16340 -31.52692 -31.23946 -28.23239 -26.56340 -25.92216 -25.59792 -25.17570 -23.75292 -21.98678 -21.43617 -20.77285 -19.54039 -19.16205 -18.29217 -17.17613 -16.52421 -15.91679 -15.41566 -15.09107 -15.00132 -14.72120 -14.58931 -14.01154 -13.70603 -13.35212 -13.25896 -12.79903 -12.60075 -12.28078 -12.18957 -12.00791 -11.58217 -11.45633 -11.37662 -11.04885 -11.01446 -10.98907 -10.77843 -10.65493 -10.55848 -10.36044 -10.32595 -9.99141 -9.84553 -9.79102 -9.70187 -9.38072 -9.10464 -8.95102 -8.66445 -8.46146 -7.66472 -6.10202 -4.19292 2.39661 2.60312 3.09874 3.21956 3.30018 3.32876 3.60871 3.70068 4.08137 4.32721 4.46870 4.69966 4.79708 4.95071 5.10078 5.10495 5.17847 5.23956 5.31250 5.36155 5.51230 5.52306 5.64823 5.67882 5.68654 5.78612 5.84088 5.91376 5.97959 6.04518 6.10019 6.16645 6.23466 6.29990 6.56456 6.69085 6.75957 6.86171 6.93327 7.00456 7.07491 7.16055 7.28121 7.32658 7.52184 7.63307 7.85219 7.91555 8.06576 8.24559 8.79720 9.45576 9.62165 10.92436 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.019023 B = 0.004551 C = 0.004074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.521005 B = 6151.595324 C = 6871.005678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.178 4.178 3 C 0.148 3.852 4 N -0.462 5.462 5 C 0.313 3.687 6 N -0.446 5.446 7 C 0.055 3.945 8 C -0.081 4.081 9 C -0.150 4.150 10 H 0.102 0.898 11 C -0.167 4.167 12 C -0.144 4.144 13 H 0.107 0.893 14 C 0.103 3.897 15 N -0.329 5.329 16 N -0.315 5.315 17 C 0.250 3.750 18 C 0.143 3.857 19 C -0.114 4.114 20 C -0.127 4.127 21 C -0.512 4.512 22 H 0.067 0.933 23 C 0.073 3.927 24 N -0.882 5.882 25 Si 0.884 3.116 26 H -0.282 1.282 27 H -0.288 1.288 28 H -0.264 1.264 29 H 0.108 0.892 30 H 0.092 0.908 31 H 0.105 0.895 32 H 0.112 0.888 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.051 0.949 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.101 0.899 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.059 0.941 42 H 0.019 0.981 43 H 0.085 0.915 44 H 0.033 0.967 45 H 0.029 0.971 46 H 0.093 0.907 47 H 0.012 0.988 48 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.034 -5.623 -12.698 16.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.197 4.197 3 C 0.026 3.974 4 N -0.154 5.154 5 C -0.043 4.043 6 N -0.170 5.170 7 C -0.073 4.073 8 C -0.119 4.119 9 C -0.168 4.168 10 H 0.120 0.880 11 C -0.204 4.204 12 C -0.162 4.162 13 H 0.125 0.875 14 C -0.025 4.025 15 N -0.173 5.173 16 N -0.153 5.153 17 C -0.017 4.017 18 C 0.140 3.860 19 C -0.172 4.172 20 C -0.186 4.186 21 C -0.551 4.551 22 H 0.086 0.914 23 C -0.129 4.129 24 N -0.520 5.520 25 Si 0.711 3.289 26 H -0.209 1.209 27 H -0.214 1.214 28 H -0.188 1.188 29 H 0.126 0.874 30 H 0.111 0.889 31 H 0.123 0.877 32 H 0.130 0.870 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.069 0.931 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.120 0.880 39 H 0.107 0.893 40 H 0.104 0.896 41 H 0.078 0.922 42 H 0.038 0.962 43 H 0.103 0.897 44 H 0.053 0.947 45 H 0.048 0.952 46 H 0.111 0.889 47 H 0.031 0.969 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 9.531 -5.803 -11.683 16.156 hybrid contribution -1.165 -0.403 -0.815 1.477 sum 8.366 -6.206 -12.498 16.270 Atomic orbital electron populations 1.23946 0.95606 1.02184 0.96076 1.22764 0.95958 0.97339 1.03649 1.20925 0.91719 0.98636 0.86136 1.46126 1.11995 1.43265 1.14019 1.22232 0.86352 1.01484 0.94268 1.58843 1.26990 1.22952 1.08257 1.22291 0.99866 0.93767 0.91329 1.21126 0.98977 0.95789 0.96042 1.22251 1.01058 0.96316 0.97202 0.88028 1.23073 1.00313 0.93963 1.03085 1.22010 1.00431 1.03214 0.90580 0.87466 1.21248 0.89914 0.96286 0.95008 1.74410 1.24394 1.16567 1.01964 1.73979 0.99846 1.16312 1.25167 1.26088 0.98815 0.96597 0.80242 1.16935 0.84138 0.91275 0.93630 1.21595 0.99868 1.00272 0.95515 1.21897 1.00131 0.98257 0.98278 1.21133 0.89996 1.00096 1.43846 0.91441 1.24808 0.98550 0.94926 0.94638 1.69837 1.22872 1.16301 1.42994 0.86738 0.82226 0.80872 0.79024 1.20855 1.21362 1.18800 0.87419 0.88920 0.87683 0.86984 0.90185 0.90760 0.93113 0.90855 0.90651 0.88017 0.89312 0.89624 0.92248 0.96173 0.89669 0.94745 0.95189 0.88862 0.96936 0.92816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 11.47 29.01 0.33 -1.96 16 2 C -0.18 -2.92 8.87 -36.03 -0.32 -3.24 16 3 C 0.15 2.48 5.72 -5.20 -0.03 2.45 16 4 N -0.46 -9.12 2.79 -115.36 -0.32 -9.44 16 5 C 0.31 6.00 6.83 -318.87 -2.18 3.82 16 6 N -0.45 -6.69 4.47 -174.89 -0.78 -7.47 16 7 C 0.06 0.69 5.33 -3.68 -0.02 0.67 16 8 C -0.08 -0.79 6.09 -26.74 -0.16 -0.95 16 9 C -0.15 -1.41 6.27 -90.62 -0.57 -1.98 16 10 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 11 C -0.17 -1.65 9.78 -26.75 -0.26 -1.91 16 12 C -0.14 -1.52 6.07 -91.64 -0.56 -2.07 16 13 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 14 C 0.10 1.41 4.89 -4.30 -0.02 1.39 16 15 N -0.33 -7.29 11.31 30.32 0.34 -6.95 16 16 N -0.32 -7.64 11.42 32.99 0.38 -7.26 16 17 C 0.25 5.75 6.28 -154.01 -0.97 4.78 16 18 C 0.14 3.38 0.48 -156.81 -0.08 3.30 16 19 C -0.11 -2.79 7.72 37.16 0.29 -2.50 16 20 C -0.13 -2.82 7.99 37.16 0.30 -2.52 16 21 C -0.51 -12.44 6.42 -34.44 -0.22 -12.66 16 22 H 0.07 1.66 4.87 -52.48 -0.26 1.40 16 23 C 0.07 1.80 5.15 -17.82 -0.09 1.70 16 24 N -0.88 -22.39 9.51 55.43 0.53 -21.87 16 25 Si 0.88 19.32 29.52 -169.99 -5.02 14.31 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 27 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 28 H -0.26 -5.38 6.18 56.52 0.35 -5.04 16 29 H 0.11 1.86 7.79 -52.49 -0.41 1.45 16 30 H 0.09 1.40 8.06 -52.49 -0.42 0.98 16 31 H 0.11 1.71 8.06 -52.48 -0.42 1.29 16 32 H 0.11 1.99 4.68 -51.93 -0.24 1.75 16 33 H 0.08 1.13 6.50 -51.93 -0.34 0.79 16 34 H 0.07 0.96 6.38 -51.93 -0.33 0.63 16 35 H 0.05 0.66 7.97 -51.93 -0.41 0.24 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.75 8.07 -51.93 -0.42 0.33 16 38 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 41 H 0.06 0.87 7.91 -51.93 -0.41 0.46 16 42 H 0.02 0.46 8.02 -51.93 -0.42 0.04 16 43 H 0.08 2.16 6.23 -51.93 -0.32 1.83 16 44 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.03 0.61 5.75 -51.93 -0.30 0.31 16 46 H 0.09 2.22 6.30 -51.93 -0.33 1.89 16 47 H 0.01 0.25 8.13 -51.93 -0.42 -0.17 16 48 H 0.26 6.46 8.31 -40.82 -0.34 6.12 16 LS Contribution 364.80 15.07 5.50 5.50 Total: -1.00 -27.57 364.80 -11.53 -39.10 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -7.60 Total: 5.77 kcal Atomic # 6 Polarization: -7.13 SS G_CDS: -4.56 Total: -11.69 kcal Atomic # 7 Polarization: -53.13 SS G_CDS: 0.14 Total: -52.99 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -5.02 Total: 14.31 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -27.57 -11.53 -39.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342242214.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.493 kcal (2) G-P(sol) polarization free energy of solvation -27.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 147.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds