Wall clock time and date at job start Tue Mar 31 2020 11:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50696 * 120.00179 * 2 1 4 4 N 1.46500 * 109.47194 * 124.61140 * 3 2 1 5 5 C 1.36457 * 127.13783 * 83.72780 * 4 3 2 6 6 N 1.38580 * 126.47032 * 359.97438 * 5 4 3 7 7 C 1.47168 * 110.99908 * 73.80544 * 6 5 4 8 8 C 1.52994 * 108.58889 * 199.59250 * 7 6 5 9 9 C 1.52979 * 109.63235 * 305.87222 * 8 7 6 10 10 H 1.08991 * 115.39270 * 232.09024 * 9 8 7 11 11 C 1.53597 * 115.98308 * 89.09564 * 9 8 7 12 12 C 1.52359 * 59.75169 * 249.57399 * 11 9 8 13 13 H 1.09001 * 116.25673 * 253.29946 * 12 11 9 14 14 C 1.46736 * 110.99953 * 196.90351 * 6 5 4 15 15 N 1.31220 * 107.05496 * 180.23795 * 5 4 3 16 16 N 1.28522 * 109.85985 * 359.56456 * 15 5 4 17 17 C 1.30294 * 110.05486 * 0.44668 * 16 15 5 18 18 C 1.50702 * 126.34760 * 179.69537 * 17 16 15 19 19 C 1.52995 * 109.47384 * 355.50880 * 18 17 16 20 20 C 1.52999 * 109.47137 * 115.51553 * 18 17 16 21 21 C 1.50704 * 109.46920 * 235.51324 * 18 17 16 22 22 H 1.08003 * 120.00143 * 359.97438 * 21 18 17 23 23 C 1.37879 * 119.99733 * 180.02562 * 21 18 17 24 24 N 1.31510 * 120.00189 * 359.97438 * 23 21 18 25 25 Si 1.86802 * 119.99868 * 179.97438 * 23 21 18 26 26 H 1.48498 * 109.47140 * 89.99668 * 25 23 21 27 27 H 1.48500 * 109.47455 * 209.99608 * 25 23 21 28 28 H 1.48507 * 109.47155 * 329.99778 * 25 23 21 29 29 H 1.07999 * 120.00083 * 359.97438 * 1 2 3 30 30 H 1.08001 * 120.00001 * 180.02562 * 1 2 3 31 31 H 1.08008 * 120.00094 * 179.97438 * 2 1 3 32 32 H 1.09006 * 109.47263 * 4.61628 * 3 2 1 33 33 H 1.09002 * 109.47138 * 244.61206 * 3 2 1 34 34 H 1.08999 * 109.61474 * 319.31990 * 7 6 5 35 35 H 1.08993 * 109.61823 * 79.67779 * 7 6 5 36 36 H 1.09001 * 109.44228 * 185.82561 * 8 7 6 37 37 H 1.08997 * 109.44632 * 65.92107 * 8 7 6 38 38 H 1.08999 * 117.52830 * 356.98980 * 11 9 8 39 39 H 1.08999 * 117.52558 * 142.09622 * 11 9 8 40 40 H 1.09004 * 109.30055 * 59.85989 * 14 6 5 41 41 H 1.09003 * 109.29783 * 300.48178 * 14 6 5 42 42 H 1.09005 * 109.46984 * 54.16909 * 19 18 17 43 43 H 1.08994 * 109.47328 * 174.16817 * 19 18 17 44 44 H 1.08994 * 109.47674 * 294.17538 * 19 18 17 45 45 H 1.09002 * 109.47349 * 67.80428 * 20 18 17 46 46 H 1.09002 * 109.47313 * 187.80357 * 20 18 17 47 47 H 1.08999 * 109.47159 * 307.79987 * 20 18 17 48 48 H 0.97006 * 120.00263 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9871 1.3357 1.1368 5 6 4.2407 0.7996 1.1944 6 7 4.8912 0.1148 0.1804 7 6 5.3399 1.0369 -0.8752 8 6 5.5922 0.2317 -2.1514 9 6 6.5610 -0.9140 -1.8531 10 1 7.4261 -0.9783 -2.5129 11 6 5.9222 -2.2331 -1.3935 12 6 6.7358 -1.3931 -0.4169 13 1 7.7210 -1.7784 -0.1540 14 6 6.0278 -0.6494 0.7069 15 7 4.7115 1.0501 2.3934 16 7 3.8433 1.7088 3.0746 17 6 2.7722 1.9078 2.3600 18 6 1.5268 2.6333 2.8003 19 6 1.6553 3.0182 4.2754 20 6 1.3478 3.8972 1.9569 21 6 0.3310 1.7344 2.6181 22 1 0.4598 0.7377 2.2227 23 6 -0.9278 2.1849 2.9553 24 7 -1.0848 3.3988 3.4364 25 14 -2.4101 1.0710 2.7289 26 1 -2.6312 0.2831 3.9681 27 1 -3.6115 1.8969 2.4466 28 1 -2.1662 0.1473 1.5920 29 1 -0.5400 0.9353 0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 1.8500 -0.9354 0.0004 32 1 1.3581 2.1319 0.0827 33 1 2.6268 1.3994 -0.9284 34 1 4.5683 1.7842 -1.0606 35 1 6.2600 1.5307 -0.5629 36 1 6.0233 0.8827 -2.9119 37 1 4.6492 -0.1761 -2.5155 38 1 4.8402 -2.2503 -1.2631 39 1 6.3672 -3.1606 -1.7536 40 1 5.6686 -1.3675 1.4441 41 1 6.7299 0.0332 1.1858 42 1 2.5763 3.5819 4.4249 43 1 0.8027 3.6317 4.5665 44 1 1.6788 2.1156 4.8858 45 1 1.1182 3.6184 0.9285 46 1 0.5300 4.4924 2.3632 47 1 2.2678 4.4815 1.9782 48 1 -1.9704 3.7159 3.6733 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342242214.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:20 Heat of formation + Delta-G solvation = 125.359599 kcal Electronic energy + Delta-G solvation = -28370.122846 eV Core-core repulsion = 24848.650539 eV Total energy + Delta-G solvation = -3521.472307 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.87183 -40.65708 -37.79794 -36.94607 -36.01652 -33.68456 -33.11320 -32.40216 -29.79261 -28.02705 -27.57569 -27.18736 -26.83566 -24.78457 -23.63516 -22.40950 -22.06858 -20.87220 -20.80473 -19.33429 -18.54685 -18.14930 -17.30528 -16.97719 -16.75179 -16.07891 -15.89981 -15.89123 -15.26945 -15.15668 -14.77536 -14.61257 -14.26277 -13.90021 -13.65862 -13.38677 -13.22925 -13.15571 -12.88932 -12.82825 -12.68037 -12.55155 -12.35681 -12.29712 -12.28732 -12.18032 -11.88980 -11.71484 -11.55384 -11.50088 -10.99244 -10.85496 -10.83161 -10.66734 -10.41819 -10.31075 -10.15499 -9.21661 -7.99531 -6.13198 0.91398 1.14644 1.46290 1.52316 1.58243 1.74545 1.99635 2.50099 2.71214 2.86733 3.27180 3.59141 3.69030 3.87775 3.90105 3.95116 4.04337 4.08400 4.19150 4.21814 4.29192 4.35664 4.40608 4.56130 4.61996 4.65990 4.74914 4.82113 4.88814 4.92645 4.96555 4.99035 5.01624 5.06497 5.12361 5.18727 5.27192 5.30542 5.36938 5.40913 5.56880 5.60709 5.69129 5.72840 5.81640 5.85125 5.97480 6.11980 6.34073 6.38008 6.87313 7.53382 7.94758 9.02152 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.019023 B = 0.004551 C = 0.004074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.521005 B = 6151.595324 C = 6871.005678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.179 4.179 3 C 0.146 3.854 4 N -0.460 5.460 5 C 0.334 3.666 6 N -0.440 5.440 7 C 0.053 3.947 8 C -0.076 4.076 9 C -0.140 4.140 10 H 0.126 0.874 11 C -0.164 4.164 12 C -0.153 4.153 13 H 0.125 0.875 14 C 0.104 3.896 15 N -0.362 5.362 16 N -0.348 5.348 17 C 0.232 3.768 18 C 0.139 3.861 19 C -0.102 4.102 20 C -0.114 4.114 21 C -0.511 4.511 22 H 0.065 0.935 23 C 0.039 3.961 24 N -0.903 5.903 25 Si 0.930 3.070 26 H -0.297 1.297 27 H -0.289 1.289 28 H -0.239 1.239 29 H 0.099 0.901 30 H 0.107 0.893 31 H 0.108 0.892 32 H 0.102 0.898 33 H 0.110 0.890 34 H 0.071 0.929 35 H 0.047 0.953 36 H 0.100 0.900 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.108 0.892 40 H 0.065 0.935 41 H 0.045 0.955 42 H 0.019 0.981 43 H 0.073 0.927 44 H 0.014 0.986 45 H 0.043 0.957 46 H 0.076 0.924 47 H 0.014 0.986 48 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.679 -6.978 -15.737 19.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.198 4.198 3 C 0.025 3.975 4 N -0.152 5.152 5 C -0.024 4.024 6 N -0.165 5.165 7 C -0.074 4.074 8 C -0.114 4.114 9 C -0.158 4.158 10 H 0.144 0.856 11 C -0.201 4.201 12 C -0.171 4.171 13 H 0.143 0.857 14 C -0.023 4.023 15 N -0.206 5.206 16 N -0.185 5.185 17 C -0.037 4.037 18 C 0.136 3.864 19 C -0.161 4.161 20 C -0.173 4.173 21 C -0.550 4.550 22 H 0.083 0.917 23 C -0.162 4.162 24 N -0.541 5.541 25 Si 0.756 3.244 26 H -0.224 1.224 27 H -0.215 1.215 28 H -0.162 1.162 29 H 0.118 0.882 30 H 0.125 0.875 31 H 0.126 0.874 32 H 0.121 0.879 33 H 0.128 0.872 34 H 0.090 0.910 35 H 0.066 0.934 36 H 0.118 0.882 37 H 0.096 0.904 38 H 0.104 0.896 39 H 0.126 0.874 40 H 0.084 0.916 41 H 0.064 0.936 42 H 0.038 0.962 43 H 0.091 0.909 44 H 0.034 0.966 45 H 0.061 0.939 46 H 0.094 0.906 47 H 0.033 0.967 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 10.187 -7.165 -14.754 19.308 hybrid contribution -1.306 -0.008 0.118 1.311 sum 8.881 -7.173 -14.636 18.562 Atomic orbital electron populations 1.24020 0.95616 1.02490 0.95648 1.22741 0.96022 0.97125 1.03942 1.21125 0.91627 0.98581 0.86210 1.46211 1.12458 1.42735 1.13757 1.22683 0.86104 0.99321 0.94261 1.59097 1.27502 1.22729 1.07221 1.22438 0.99486 0.93876 0.91620 1.21162 0.99523 0.95974 0.94728 1.22397 1.01525 0.95674 0.96197 0.85585 1.23087 0.99386 0.95131 1.02484 1.21962 1.00998 1.03957 0.90189 0.85710 1.21239 0.89215 0.95635 0.96236 1.74332 1.24715 1.18087 1.03497 1.73877 1.00716 1.17375 1.26578 1.25830 0.98472 0.97764 0.81600 1.16890 0.84565 0.91934 0.92975 1.21452 0.99212 0.98997 0.96412 1.21722 0.99498 0.97388 0.98645 1.21199 0.90286 0.99954 1.43580 0.91676 1.25344 1.00463 0.95842 0.94522 1.69940 1.23119 1.17417 1.43623 0.86004 0.79600 0.79743 0.79011 1.22411 1.21498 1.16236 0.88249 0.87454 0.87411 0.87946 0.87197 0.91024 0.93420 0.88206 0.90422 0.89630 0.87416 0.91622 0.93620 0.96172 0.90851 0.96638 0.93860 0.90555 0.96658 0.93010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.28 11.47 67.78 0.78 -3.50 16 2 C -0.18 -5.56 8.87 25.65 0.23 -5.33 16 3 C 0.15 4.65 5.72 85.63 0.49 5.14 16 4 N -0.46 -17.91 2.79 -518.89 -1.45 -19.36 16 5 C 0.33 12.68 6.83 260.11 1.78 14.45 16 6 N -0.44 -12.65 4.47 -707.23 -3.16 -15.81 16 7 C 0.05 1.20 5.33 86.25 0.46 1.66 16 8 C -0.08 -1.19 6.09 30.59 0.19 -1.01 16 9 C -0.14 -2.09 6.27 -10.80 -0.07 -2.16 16 10 H 0.13 1.37 8.14 -2.39 -0.02 1.35 16 11 C -0.16 -2.72 9.78 30.58 0.30 -2.42 16 12 C -0.15 -2.84 6.07 -11.46 -0.07 -2.91 16 13 H 0.13 1.91 8.14 -2.39 -0.02 1.89 16 14 C 0.10 2.78 4.89 86.08 0.42 3.21 16 15 N -0.36 -16.35 11.31 -58.00 -0.66 -17.01 16 16 N -0.35 -17.26 11.42 -49.53 -0.57 -17.83 16 17 C 0.23 10.80 6.28 137.64 0.86 11.66 16 18 C 0.14 6.66 0.48 -53.67 -0.03 6.63 16 19 C -0.10 -5.16 7.72 71.98 0.56 -4.60 16 20 C -0.11 -5.08 7.99 71.98 0.57 -4.51 16 21 C -0.51 -24.83 6.42 25.60 0.16 -24.67 16 22 H 0.07 3.16 4.87 -2.91 -0.01 3.14 16 23 C 0.04 1.89 5.15 84.66 0.44 2.33 16 24 N -0.90 -46.22 9.51 21.45 0.20 -46.02 16 25 Si 0.93 39.07 29.52 68.60 2.03 41.10 16 26 H -0.30 -13.19 7.11 99.48 0.71 -12.48 16 27 H -0.29 -12.17 7.11 99.48 0.71 -11.46 16 28 H -0.24 -9.01 6.18 99.48 0.61 -8.39 16 29 H 0.10 3.24 7.79 -2.91 -0.02 3.21 16 30 H 0.11 2.95 8.06 -2.91 -0.02 2.93 16 31 H 0.11 3.30 8.06 -2.91 -0.02 3.28 16 32 H 0.10 3.51 4.68 -2.38 -0.01 3.49 16 33 H 0.11 2.81 6.50 -2.39 -0.02 2.80 16 34 H 0.07 1.68 6.38 -2.39 -0.02 1.67 16 35 H 0.05 1.14 7.97 -2.39 -0.02 1.12 16 36 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.08 1.24 8.07 -2.39 -0.02 1.22 16 38 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 41 H 0.05 1.34 7.91 -2.39 -0.02 1.32 16 42 H 0.02 0.96 8.02 -2.38 -0.02 0.94 16 43 H 0.07 3.83 6.23 -2.39 -0.01 3.82 16 44 H 0.01 0.77 8.14 -2.39 -0.02 0.75 16 45 H 0.04 1.76 5.75 -2.39 -0.01 1.75 16 46 H 0.08 3.67 6.30 -2.39 -0.02 3.65 16 47 H 0.01 0.63 8.13 -2.39 -0.02 0.61 16 48 H 0.26 12.95 8.31 -92.70 -0.77 12.18 16 Total: -1.00 -60.32 364.80 4.32 -56.00 By element: Atomic # 1 Polarization: 24.10 SS G_CDS: 0.86 Total: 24.96 kcal Atomic # 6 Polarization: -13.09 SS G_CDS: 7.07 Total: -6.02 kcal Atomic # 7 Polarization: -110.40 SS G_CDS: -5.63 Total: -116.03 kcal Atomic # 14 Polarization: 39.07 SS G_CDS: 2.03 Total: 41.10 kcal Total: -60.32 4.32 -56.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342242214.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.355 kcal (2) G-P(sol) polarization free energy of solvation -60.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds