Wall clock time and date at job start Tue Mar 31 2020 11:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.53121 * 109.52105 * 213.54722 * 3 2 1 5 5 C 1.53038 * 109.27765 * 177.55756 * 4 3 2 6 6 N 1.46847 * 109.52438 * 300.82141 * 5 4 3 7 7 C 1.38580 * 110.99637 * 185.84214 * 6 5 4 8 8 N 1.31218 * 126.47569 * 2.27838 * 7 6 5 9 9 N 1.28530 * 109.85641 * 179.97438 * 8 7 6 10 10 C 1.30293 * 110.05619 * 359.72070 * 9 8 7 11 11 C 1.50701 * 126.34805 * 180.31327 * 10 9 8 12 12 C 1.53001 * 109.47067 * 112.61625 * 11 10 9 13 13 C 1.53000 * 109.47395 * 232.61796 * 11 10 9 14 14 C 1.50701 * 109.46907 * 352.61947 * 11 10 9 15 15 H 1.08001 * 120.00081 * 0.02562 * 14 11 10 16 16 C 1.37880 * 119.99775 * 179.97438 * 14 11 10 17 17 N 1.31514 * 120.00286 * 0.02562 * 16 14 11 18 18 Si 1.86804 * 119.99940 * 179.97438 * 16 14 11 19 19 H 1.48495 * 109.46628 * 60.00545 * 18 16 14 20 20 H 1.48498 * 109.46922 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47137 * 300.00363 * 18 16 14 22 22 N 1.36460 * 126.46941 * 182.26521 * 7 6 5 23 23 C 1.46494 * 127.13389 * 0.02562 * 22 7 6 24 24 C 1.52998 * 109.47019 * 96.03242 * 23 22 7 25 25 C 1.46841 * 111.19623 * 61.73960 * 6 5 4 26 26 C 1.53034 * 109.52706 * 298.25376 * 25 6 5 27 27 H 4.44832 * 5.63147 * 180.02562 * 4 1 2 28 28 H 1.08990 * 109.57629 * 93.38821 * 3 2 1 29 29 H 1.09004 * 109.50215 * 57.61594 * 4 3 2 30 30 H 1.09002 * 109.50452 * 297.49815 * 4 3 2 31 31 H 1.08999 * 109.45910 * 180.80064 * 5 4 3 32 32 H 1.09005 * 109.46020 * 60.83773 * 5 4 3 33 33 H 1.09004 * 109.46807 * 64.87909 * 12 11 10 34 34 H 1.09001 * 109.47104 * 184.87702 * 12 11 10 35 35 H 1.08998 * 109.47478 * 304.87985 * 12 11 10 36 36 H 1.09002 * 109.46626 * 49.14404 * 13 11 10 37 37 H 1.08992 * 109.47444 * 169.14595 * 13 11 10 38 38 H 1.09003 * 109.46813 * 289.14940 * 13 11 10 39 39 H 0.96995 * 120.00694 * 179.97438 * 17 16 14 40 40 H 1.09000 * 109.47544 * 336.02615 * 23 22 7 41 41 H 1.09010 * 109.46964 * 216.02455 * 23 22 7 42 42 H 1.09003 * 109.47469 * 173.20975 * 24 23 22 43 43 H 1.09002 * 109.47317 * 53.20643 * 24 23 22 44 44 H 1.09001 * 109.47197 * 293.20641 * 24 23 22 45 45 H 1.09003 * 109.46444 * 58.27765 * 25 6 5 46 46 H 1.09005 * 109.45756 * 178.23886 * 25 6 5 47 47 H 1.08988 * 109.50899 * 299.24532 * 26 25 6 48 48 H 1.09000 * 109.50138 * 179.11914 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1571 1.2037 0.7975 5 6 4.6863 1.1653 0.8455 6 7 5.1263 -0.0856 1.4764 7 6 6.5006 -0.0954 1.6543 8 7 7.3323 0.8756 1.3591 9 7 8.5334 0.5269 1.6555 10 6 8.5384 -0.6749 2.1586 11 6 9.7469 -1.4381 2.6365 12 6 9.6709 -1.6150 4.1543 13 6 9.7812 -2.8120 1.9640 14 6 10.9962 -0.6737 2.2817 15 1 10.9226 0.2704 1.7626 16 6 12.2334 -1.1793 2.6209 17 7 12.3231 -2.3288 3.2535 18 14 13.7821 -0.2322 2.1805 19 1 13.7487 1.1016 2.8324 20 1 14.9729 -0.9842 2.6515 21 1 13.8559 -0.0615 0.7072 22 7 7.2444 -1.1167 2.1699 23 6 6.7569 -2.4145 2.6432 24 6 6.8962 -3.4501 1.5256 25 6 4.6874 -1.2537 0.7023 26 6 3.1583 -1.2876 0.6502 27 1 -1.0502 -0.0004 0.0000 28 1 3.0112 0.0615 -1.0251 29 1 2.7601 1.1631 1.8119 30 1 2.8312 2.1252 0.3151 31 1 5.0528 2.0128 1.4247 32 1 5.0829 1.2198 -0.1684 33 1 8.8145 -2.2412 4.4047 34 1 10.5849 -2.0900 4.5109 35 1 9.5592 -0.6401 4.6287 36 1 9.6412 -2.6940 0.8895 37 1 10.7438 -3.2861 2.1551 38 1 8.9829 -3.4344 2.3683 39 1 13.1934 -2.6847 3.4917 40 1 5.7086 -2.3268 2.9287 41 1 7.3434 -2.7302 3.5061 42 1 6.6479 -4.4383 1.9128 43 1 7.9222 -3.4514 1.1573 44 1 6.2179 -3.1983 0.7103 45 1 5.0840 -1.1879 -0.3109 46 1 5.0548 -2.1632 1.1776 47 1 2.7613 -1.3673 1.6620 48 1 2.8332 -2.1460 0.0623 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342787190.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:28 Heat of formation + Delta-G solvation = 148.377644 kcal Electronic energy + Delta-G solvation = -27743.034715 eV Core-core repulsion = 24222.560545 eV Total energy + Delta-G solvation = -3520.474169 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.34751 -39.31457 -36.20414 -35.46401 -34.45655 -31.86523 -31.24961 -30.94624 -30.30071 -28.14585 -26.02542 -25.33521 -24.85440 -23.65837 -23.59078 -21.47190 -21.05596 -19.98984 -18.95678 -18.40329 -17.20956 -16.12088 -15.75246 -15.42807 -15.36972 -15.04216 -14.67216 -14.52965 -14.11058 -13.88677 -13.70866 -13.32328 -12.89586 -12.79551 -12.43695 -12.06704 -11.99657 -11.69338 -11.50264 -11.40644 -11.35804 -11.32246 -11.22921 -10.93885 -10.74475 -10.57717 -10.38787 -10.28000 -10.19549 -10.12549 -10.01859 -9.94140 -9.74400 -9.53282 -9.20394 -8.74527 -8.33949 -7.57865 -6.01497 -4.07893 2.46459 2.57102 2.60630 2.82830 3.37704 3.39740 3.46775 3.66265 3.91878 4.02800 4.45463 4.51659 4.62239 4.79450 4.84690 4.95613 5.11417 5.14284 5.22848 5.26856 5.29741 5.31427 5.37880 5.43740 5.57883 5.63167 5.69400 5.75819 5.78133 5.86645 5.87677 5.96957 6.07667 6.21332 6.26321 6.46987 6.58469 6.66401 6.69633 6.76478 6.92564 7.13867 7.26077 7.35182 7.37740 7.63269 7.83140 7.87119 8.11662 8.34178 8.99255 9.55327 9.69941 11.01206 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.027749 B = 0.003336 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.818540 B = 8391.824748 C = 9005.047726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.174 4.174 3 C 0.015 3.985 4 C -0.107 4.107 5 C 0.074 3.926 6 N -0.446 5.446 7 C 0.319 3.681 8 N -0.331 5.331 9 N -0.287 5.287 10 C 0.239 3.761 11 C 0.148 3.852 12 C -0.133 4.133 13 C -0.144 4.144 14 C -0.489 4.489 15 H 0.076 0.924 16 C 0.061 3.939 17 N -0.895 5.895 18 Si 0.900 3.100 19 H -0.276 1.276 20 H -0.289 1.289 21 H -0.277 1.277 22 N -0.484 5.484 23 C 0.103 3.897 24 C -0.198 4.198 25 C 0.037 3.963 26 C -0.104 4.104 27 H 0.216 0.784 28 H 0.092 0.908 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.095 0.905 32 H 0.052 0.948 33 H 0.010 0.990 34 H 0.100 0.900 35 H 0.030 0.970 36 H 0.026 0.974 37 H 0.099 0.901 38 H 0.027 0.973 39 H 0.261 0.739 40 H 0.088 0.912 41 H 0.101 0.899 42 H 0.074 0.926 43 H 0.094 0.906 44 H 0.058 0.942 45 H 0.047 0.953 46 H 0.096 0.904 47 H 0.078 0.922 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.513 -2.751 -3.614 20.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.174 4.174 3 C -0.003 4.003 4 C -0.145 4.145 5 C -0.053 4.053 6 N -0.170 5.170 7 C -0.037 4.037 8 N -0.176 5.176 9 N -0.124 5.124 10 C -0.028 4.028 11 C 0.145 3.855 12 C -0.191 4.191 13 C -0.202 4.202 14 C -0.528 4.528 15 H 0.094 0.906 16 C -0.139 4.139 17 N -0.535 5.535 18 Si 0.728 3.272 19 H -0.201 1.201 20 H -0.215 1.215 21 H -0.203 1.203 22 N -0.180 5.180 23 C -0.020 4.020 24 C -0.255 4.255 25 C -0.090 4.090 26 C -0.142 4.142 27 H 0.233 0.767 28 H 0.110 0.890 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.113 0.887 32 H 0.070 0.930 33 H 0.029 0.971 34 H 0.118 0.882 35 H 0.049 0.951 36 H 0.045 0.955 37 H 0.118 0.882 38 H 0.045 0.955 39 H 0.071 0.929 40 H 0.106 0.894 41 H 0.119 0.881 42 H 0.093 0.907 43 H 0.113 0.887 44 H 0.077 0.923 45 H 0.065 0.935 46 H 0.114 0.886 47 H 0.097 0.903 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -19.099 -1.535 -3.589 19.494 hybrid contribution 0.240 -0.745 -0.421 0.889 sum -18.859 -2.280 -4.011 19.415 Atomic orbital electron populations 1.24877 0.95868 1.00875 1.01386 1.22996 0.94117 1.00254 1.00028 1.18440 0.84514 0.96574 1.00777 1.21681 0.94527 0.97119 1.01194 1.21991 0.93996 0.90536 0.98791 1.58626 1.04593 1.04990 1.48833 1.22436 0.89775 0.88482 1.03022 1.74526 0.96615 1.23758 1.22662 1.74047 1.11004 1.10819 1.16498 1.26094 0.84663 0.93025 0.99066 1.16868 0.85342 0.91025 0.92256 1.21930 1.01360 0.99096 0.96716 1.22249 1.03260 0.97330 0.97340 1.21063 0.88492 1.06529 1.36709 0.90605 1.24868 0.98951 0.95074 0.94987 1.69753 1.24393 1.18604 1.40728 0.86506 0.81771 0.79967 0.78937 1.20134 1.21476 1.20257 1.46332 1.07907 1.14066 1.49666 1.21894 1.00754 0.80736 0.98635 1.22818 1.05625 0.98458 0.98580 1.22687 0.95745 0.93667 0.96871 1.21607 0.93852 0.96590 1.02135 0.76718 0.89038 0.90423 0.90343 0.88672 0.92997 0.97133 0.88166 0.95106 0.95475 0.88226 0.95475 0.92876 0.89359 0.88102 0.90665 0.88704 0.92335 0.93498 0.88576 0.90301 0.90535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.80 19.25 29.55 0.57 -1.23 16 2 C -0.17 -1.68 12.57 -37.12 -0.47 -2.15 16 3 C 0.02 0.14 2.64 -93.28 -0.25 -0.11 16 4 C -0.11 -1.05 5.33 -26.65 -0.14 -1.19 16 5 C 0.07 0.94 4.90 -3.83 -0.02 0.93 16 6 N -0.45 -6.38 4.67 -174.55 -0.82 -7.19 16 7 C 0.32 5.95 7.26 -318.86 -2.31 3.63 16 8 N -0.33 -7.35 11.22 30.32 0.34 -7.01 16 9 N -0.29 -7.16 11.01 32.99 0.36 -6.80 16 10 C 0.24 5.46 6.32 -154.02 -0.97 4.48 16 11 C 0.15 3.51 0.52 -156.81 -0.08 3.43 16 12 C -0.13 -3.02 8.21 37.16 0.30 -2.72 16 13 C -0.14 -3.13 6.63 37.16 0.25 -2.88 16 14 C -0.49 -13.20 7.91 -34.44 -0.27 -13.47 16 15 H 0.08 2.18 6.96 -52.49 -0.37 1.81 16 16 C 0.06 1.61 5.09 -17.82 -0.09 1.52 16 17 N -0.90 -23.43 9.31 55.43 0.52 -22.91 16 18 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 N -0.48 -9.03 2.80 -114.08 -0.32 -9.35 16 23 C 0.10 1.47 5.03 -4.05 -0.02 1.45 16 24 C -0.20 -2.47 8.94 37.16 0.33 -2.13 16 25 C 0.04 0.43 4.82 -3.84 -0.02 0.41 16 26 C -0.10 -0.95 5.33 -26.65 -0.14 -1.09 16 27 H 0.22 1.09 7.80 -54.08 -0.42 0.67 16 28 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.09 1.34 7.89 -51.93 -0.41 0.93 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.01 0.20 5.87 -51.93 -0.30 -0.11 16 34 H 0.10 2.46 5.95 -51.93 -0.31 2.16 16 35 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.03 0.58 7.45 -51.93 -0.39 0.20 16 37 H 0.10 2.40 5.86 -51.93 -0.30 2.10 16 38 H 0.03 0.49 4.54 -51.93 -0.24 0.26 16 39 H 0.26 6.63 8.31 -40.82 -0.34 6.29 16 40 H 0.09 1.07 7.04 -51.93 -0.37 0.70 16 41 H 0.10 1.49 5.27 -51.92 -0.27 1.22 16 42 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.09 1.44 4.30 -51.93 -0.22 1.21 16 44 H 0.06 0.67 5.86 -51.93 -0.30 0.36 16 45 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 46 H 0.10 1.07 2.94 -51.93 -0.15 0.91 16 47 H 0.08 0.74 8.14 -51.94 -0.42 0.31 16 48 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 359.94 15.07 5.42 5.42 Total: -1.00 -30.33 359.94 -9.84 -40.17 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -7.00 Total: 2.53 kcal Atomic # 6 Polarization: -7.78 SS G_CDS: -3.33 Total: -11.12 kcal Atomic # 7 Polarization: -53.35 SS G_CDS: 0.08 Total: -53.27 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.33 -9.84 -40.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342787190.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.553 kcal (2) G-P(sol) polarization free energy of solvation -30.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 158.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 148.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds