Wall clock time and date at job start Tue Mar 31 2020 11:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.53121 * 109.52105 * 213.54722 * 3 2 1 5 5 C 1.53038 * 109.27765 * 177.55756 * 4 3 2 6 6 N 1.46847 * 109.52438 * 300.82141 * 5 4 3 7 7 C 1.38580 * 110.99637 * 185.84214 * 6 5 4 8 8 N 1.31218 * 126.47569 * 2.27838 * 7 6 5 9 9 N 1.28530 * 109.85641 * 179.97438 * 8 7 6 10 10 C 1.30293 * 110.05619 * 359.72070 * 9 8 7 11 11 C 1.50701 * 126.34805 * 180.31327 * 10 9 8 12 12 C 1.53001 * 109.47067 * 112.61625 * 11 10 9 13 13 C 1.53000 * 109.47395 * 232.61796 * 11 10 9 14 14 C 1.50701 * 109.46907 * 352.61947 * 11 10 9 15 15 H 1.08001 * 120.00081 * 0.02562 * 14 11 10 16 16 C 1.37880 * 119.99775 * 179.97438 * 14 11 10 17 17 N 1.31514 * 120.00286 * 0.02562 * 16 14 11 18 18 Si 1.86804 * 119.99940 * 179.97438 * 16 14 11 19 19 H 1.48495 * 109.46628 * 60.00545 * 18 16 14 20 20 H 1.48498 * 109.46922 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47137 * 300.00363 * 18 16 14 22 22 N 1.36460 * 126.46941 * 182.26521 * 7 6 5 23 23 C 1.46494 * 127.13389 * 0.02562 * 22 7 6 24 24 C 1.52998 * 109.47019 * 96.03242 * 23 22 7 25 25 C 1.46841 * 111.19623 * 61.73960 * 6 5 4 26 26 C 1.53034 * 109.52706 * 298.25376 * 25 6 5 27 27 H 4.44832 * 5.63147 * 180.02562 * 4 1 2 28 28 H 1.08990 * 109.57629 * 93.38821 * 3 2 1 29 29 H 1.09004 * 109.50215 * 57.61594 * 4 3 2 30 30 H 1.09002 * 109.50452 * 297.49815 * 4 3 2 31 31 H 1.08999 * 109.45910 * 180.80064 * 5 4 3 32 32 H 1.09005 * 109.46020 * 60.83773 * 5 4 3 33 33 H 1.09004 * 109.46807 * 64.87909 * 12 11 10 34 34 H 1.09001 * 109.47104 * 184.87702 * 12 11 10 35 35 H 1.08998 * 109.47478 * 304.87985 * 12 11 10 36 36 H 1.09002 * 109.46626 * 49.14404 * 13 11 10 37 37 H 1.08992 * 109.47444 * 169.14595 * 13 11 10 38 38 H 1.09003 * 109.46813 * 289.14940 * 13 11 10 39 39 H 0.96995 * 120.00694 * 179.97438 * 17 16 14 40 40 H 1.09000 * 109.47544 * 336.02615 * 23 22 7 41 41 H 1.09010 * 109.46964 * 216.02455 * 23 22 7 42 42 H 1.09003 * 109.47469 * 173.20975 * 24 23 22 43 43 H 1.09002 * 109.47317 * 53.20643 * 24 23 22 44 44 H 1.09001 * 109.47197 * 293.20641 * 24 23 22 45 45 H 1.09003 * 109.46444 * 58.27765 * 25 6 5 46 46 H 1.09005 * 109.45756 * 178.23886 * 25 6 5 47 47 H 1.08988 * 109.50899 * 299.24532 * 26 25 6 48 48 H 1.09000 * 109.50138 * 179.11914 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1571 1.2037 0.7975 5 6 4.6863 1.1653 0.8455 6 7 5.1263 -0.0856 1.4764 7 6 6.5006 -0.0954 1.6543 8 7 7.3323 0.8756 1.3591 9 7 8.5334 0.5269 1.6555 10 6 8.5384 -0.6749 2.1586 11 6 9.7469 -1.4381 2.6365 12 6 9.6709 -1.6150 4.1543 13 6 9.7812 -2.8120 1.9640 14 6 10.9962 -0.6737 2.2817 15 1 10.9226 0.2704 1.7626 16 6 12.2334 -1.1793 2.6209 17 7 12.3231 -2.3288 3.2535 18 14 13.7821 -0.2322 2.1805 19 1 13.7487 1.1016 2.8324 20 1 14.9729 -0.9842 2.6515 21 1 13.8559 -0.0615 0.7072 22 7 7.2444 -1.1167 2.1699 23 6 6.7569 -2.4145 2.6432 24 6 6.8962 -3.4501 1.5256 25 6 4.6874 -1.2537 0.7023 26 6 3.1583 -1.2876 0.6502 27 1 -1.0502 -0.0004 0.0000 28 1 3.0112 0.0615 -1.0251 29 1 2.7601 1.1631 1.8119 30 1 2.8312 2.1252 0.3151 31 1 5.0528 2.0128 1.4247 32 1 5.0829 1.2198 -0.1684 33 1 8.8145 -2.2412 4.4047 34 1 10.5849 -2.0900 4.5109 35 1 9.5592 -0.6401 4.6287 36 1 9.6412 -2.6940 0.8895 37 1 10.7438 -3.2861 2.1551 38 1 8.9829 -3.4344 2.3683 39 1 13.1934 -2.6847 3.4917 40 1 5.7086 -2.3268 2.9287 41 1 7.3434 -2.7302 3.5061 42 1 6.6479 -4.4383 1.9128 43 1 7.9222 -3.4514 1.1573 44 1 6.2179 -3.1983 0.7103 45 1 5.0840 -1.1879 -0.3109 46 1 5.0548 -2.1632 1.1776 47 1 2.7613 -1.3673 1.6620 48 1 2.8332 -2.1460 0.0623 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342787190.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:27 Heat of formation + Delta-G solvation = 133.777421 kcal Electronic energy + Delta-G solvation = -27743.667828 eV Core-core repulsion = 24222.560545 eV Total energy + Delta-G solvation = -3521.107283 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.89728 -40.32634 -37.86956 -36.66941 -35.71023 -33.25366 -32.48358 -32.00147 -31.56951 -29.63966 -27.79352 -27.18763 -26.02169 -24.90812 -24.59579 -23.04899 -22.26284 -21.07534 -20.58172 -19.08595 -18.50175 -17.86233 -17.23089 -16.89105 -16.78255 -16.24856 -15.90555 -15.48501 -15.26983 -15.06294 -14.76932 -14.64417 -14.49784 -14.14697 -13.61935 -13.57533 -13.26520 -13.10904 -12.97463 -12.69841 -12.62601 -12.46184 -12.32740 -12.23002 -12.18603 -12.10944 -12.01952 -11.83078 -11.79569 -11.70302 -11.32822 -11.09362 -10.94882 -10.91352 -10.67232 -10.56798 -10.32298 -9.09540 -8.03161 -6.14609 0.99502 1.40272 1.45415 1.45851 1.55359 1.91572 1.95784 2.05736 2.48630 2.67100 3.21855 3.34991 3.61466 3.68446 3.79755 3.84319 4.02731 4.06190 4.12158 4.22015 4.24780 4.33156 4.37150 4.45071 4.51571 4.60617 4.64612 4.72263 4.77779 4.80949 4.88273 4.89762 4.93512 5.03270 5.04538 5.09963 5.21820 5.22919 5.28366 5.30301 5.33358 5.50982 5.62447 5.72242 5.83605 6.02623 6.11764 6.35412 6.45578 6.74947 6.88466 7.50976 8.05586 8.96881 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.027749 B = 0.003336 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.818540 B = 8391.824748 C = 9005.047726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.208 4.208 3 C 0.017 3.983 4 C -0.096 4.096 5 C 0.075 3.925 6 N -0.441 5.441 7 C 0.340 3.660 8 N -0.370 5.370 9 N -0.335 5.335 10 C 0.223 3.777 11 C 0.145 3.855 12 C -0.122 4.122 13 C -0.128 4.128 14 C -0.514 4.514 15 H 0.047 0.953 16 C 0.031 3.969 17 N -0.899 5.899 18 Si 0.945 3.055 19 H -0.283 1.283 20 H -0.276 1.276 21 H -0.281 1.281 22 N -0.479 5.479 23 C 0.093 3.907 24 C -0.192 4.192 25 C 0.037 3.963 26 C -0.094 4.094 27 H 0.244 0.756 28 H 0.094 0.906 29 H 0.077 0.923 30 H 0.091 0.909 31 H 0.076 0.924 32 H 0.044 0.956 33 H 0.042 0.958 34 H 0.082 0.918 35 H 0.011 0.989 36 H 0.017 0.983 37 H 0.076 0.924 38 H 0.062 0.938 39 H 0.263 0.737 40 H 0.117 0.883 41 H 0.099 0.901 42 H 0.110 0.890 43 H 0.067 0.933 44 H 0.070 0.930 45 H 0.042 0.958 46 H 0.105 0.895 47 H 0.081 0.919 48 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.493 -4.553 -3.695 23.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.208 4.208 3 C -0.001 4.001 4 C -0.133 4.133 5 C -0.052 4.052 6 N -0.166 5.166 7 C -0.018 4.018 8 N -0.215 5.215 9 N -0.172 5.172 10 C -0.046 4.046 11 C 0.142 3.858 12 C -0.180 4.180 13 C -0.186 4.186 14 C -0.553 4.553 15 H 0.065 0.935 16 C -0.168 4.168 17 N -0.539 5.539 18 Si 0.772 3.228 19 H -0.209 1.209 20 H -0.201 1.201 21 H -0.207 1.207 22 N -0.174 5.174 23 C -0.029 4.029 24 C -0.249 4.249 25 C -0.090 4.090 26 C -0.132 4.132 27 H 0.260 0.740 28 H 0.112 0.888 29 H 0.096 0.904 30 H 0.109 0.891 31 H 0.094 0.906 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.100 0.900 35 H 0.031 0.969 36 H 0.036 0.964 37 H 0.094 0.906 38 H 0.080 0.920 39 H 0.073 0.927 40 H 0.135 0.865 41 H 0.117 0.883 42 H 0.129 0.871 43 H 0.085 0.915 44 H 0.088 0.912 45 H 0.060 0.940 46 H 0.123 0.877 47 H 0.100 0.900 48 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -22.098 -3.363 -3.668 22.651 hybrid contribution 1.000 -0.166 -0.407 1.093 sum -21.098 -3.529 -4.075 21.775 Atomic orbital electron populations 1.25660 0.96724 0.99271 0.99894 1.23130 0.94499 1.01743 1.01437 1.18368 0.84869 0.96104 1.00753 1.21594 0.91748 0.98405 1.01591 1.22022 0.96151 0.89328 0.97734 1.58830 1.01437 1.06727 1.49596 1.22870 0.91099 0.87339 1.00476 1.74404 0.96429 1.25651 1.24976 1.73926 1.12837 1.12420 1.17978 1.25745 0.86024 0.92878 0.99951 1.16787 0.84699 0.91581 0.92774 1.21769 1.01786 0.98429 0.96034 1.22071 1.03180 0.96547 0.96761 1.21167 0.90662 1.06156 1.37271 0.93479 1.25329 1.00602 0.95844 0.95046 1.69821 1.24822 1.18747 1.40481 0.85827 0.79874 0.78848 0.78291 1.20851 1.20082 1.20672 1.46438 1.06459 1.15350 1.49147 1.22307 1.02178 0.79146 0.99223 1.22772 1.04197 0.99637 0.98340 1.22833 0.97594 0.92417 0.96112 1.21574 0.91511 0.97369 1.02734 0.73993 0.88782 0.90445 0.89089 0.90587 0.93756 0.93920 0.89967 0.96938 0.96370 0.90570 0.91969 0.92687 0.86462 0.88336 0.87115 0.91451 0.91153 0.94009 0.87727 0.90005 0.88425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.68 19.25 74.32 1.43 -1.25 16 2 C -0.21 -3.41 12.57 31.13 0.39 -3.02 16 3 C 0.02 0.28 2.64 -12.52 -0.03 0.24 16 4 C -0.10 -1.71 5.33 30.65 0.16 -1.55 16 5 C 0.07 1.87 4.90 86.33 0.42 2.29 16 6 N -0.44 -12.04 4.67 -706.15 -3.30 -15.34 16 7 C 0.34 12.59 7.26 260.11 1.89 14.48 16 8 N -0.37 -17.00 11.22 -58.00 -0.65 -17.66 16 9 N -0.34 -17.46 11.01 -49.54 -0.55 -18.00 16 10 C 0.22 10.42 6.32 137.64 0.87 11.29 16 11 C 0.14 6.97 0.52 -53.67 -0.03 6.94 16 12 C -0.12 -5.57 8.21 71.98 0.59 -4.98 16 13 C -0.13 -5.54 6.63 71.98 0.48 -5.06 16 14 C -0.51 -28.75 7.91 25.60 0.20 -28.55 16 15 H 0.05 2.86 6.96 -2.91 -0.02 2.84 16 16 C 0.03 1.67 5.09 84.66 0.43 2.10 16 17 N -0.90 -47.45 9.31 21.45 0.20 -47.25 16 18 Si 0.94 44.49 29.54 68.60 2.03 46.52 16 19 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 20 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 21 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 22 N -0.48 -17.53 2.80 -514.85 -1.44 -18.98 16 23 C 0.09 2.39 5.03 86.38 0.43 2.83 16 24 C -0.19 -4.18 8.94 71.98 0.64 -3.53 16 25 C 0.04 0.75 4.82 86.33 0.42 1.16 16 26 C -0.09 -1.41 5.33 30.65 0.16 -1.24 16 27 H 0.24 1.48 7.80 -4.41 -0.03 1.45 16 28 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 30 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.08 2.19 7.89 -2.39 -0.02 2.18 16 32 H 0.04 1.18 8.14 -2.38 -0.02 1.16 16 33 H 0.04 1.62 5.87 -2.38 -0.01 1.61 16 34 H 0.08 4.07 5.95 -2.39 -0.01 4.05 16 35 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.02 0.78 7.45 -2.39 -0.02 0.76 16 37 H 0.08 3.68 5.86 -2.39 -0.01 3.67 16 38 H 0.06 2.19 4.54 -2.39 -0.01 2.18 16 39 H 0.26 13.34 8.31 -92.71 -0.77 12.57 16 40 H 0.12 2.38 7.04 -2.39 -0.02 2.36 16 41 H 0.10 2.62 5.27 -2.38 -0.01 2.61 16 42 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 43 H 0.07 1.89 4.30 -2.39 -0.01 1.88 16 44 H 0.07 1.37 5.86 -2.39 -0.01 1.35 16 45 H 0.04 0.92 8.14 -2.39 -0.02 0.91 16 46 H 0.10 1.95 2.94 -2.38 -0.01 1.95 16 47 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 48 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -69.10 359.94 5.72 -63.38 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: 0.97 Total: 15.18 kcal Atomic # 6 Polarization: -16.32 SS G_CDS: 8.46 Total: -7.85 kcal Atomic # 7 Polarization: -111.48 SS G_CDS: -5.74 Total: -117.22 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -69.10 5.72 -63.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342787190.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 197.160 kcal (2) G-P(sol) polarization free energy of solvation -69.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds