Wall clock time and date at job start Tue Mar 31 2020 11:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46502 * 109.46875 * 2 1 4 4 C 1.36747 * 127.13211 * 275.43528 * 3 2 1 5 5 C 1.50694 * 126.34886 * 0.02562 * 4 3 2 6 6 C 1.54636 * 111.03714 * 232.02372 * 5 4 3 7 7 C 1.51102 * 104.72572 * 217.33020 * 6 5 4 8 8 C 1.30534 * 111.10210 * 16.44080 * 7 6 5 9 9 C 1.51098 * 111.10232 * 359.97438 * 8 7 6 10 10 N 1.30291 * 107.30155 * 179.97438 * 4 3 2 11 11 N 1.28534 * 110.05715 * 359.72694 * 10 4 3 12 12 C 1.31217 * 109.85498 * 0.45178 * 11 10 4 13 13 N 1.38581 * 126.46734 * 179.81689 * 12 11 10 14 14 C 1.46827 * 110.98022 * 66.93006 * 13 12 11 15 15 C 1.53040 * 109.51755 * 174.15437 * 14 13 12 16 16 C 1.53118 * 109.27845 * 59.17030 * 15 14 13 17 17 C 1.53121 * 109.16493 * 302.34977 * 16 15 14 18 18 H 1.09002 * 109.49905 * 297.71279 * 17 16 15 19 19 C 1.50696 * 109.53466 * 177.61566 * 17 16 15 20 20 H 1.08005 * 119.99773 * 240.17575 * 19 17 16 21 21 C 1.37875 * 120.00449 * 60.17593 * 19 17 16 22 22 N 1.31519 * 119.99656 * 0.02562 * 21 19 17 23 23 Si 1.86793 * 120.00131 * 179.97438 * 21 19 17 24 24 H 1.48495 * 109.47355 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.46982 * 120.00382 * 23 21 19 26 26 H 1.48503 * 109.47292 * 240.00246 * 23 21 19 27 27 C 1.46837 * 111.00404 * 302.70916 * 13 12 11 28 28 H 1.09000 * 109.47045 * 59.23446 * 1 2 3 29 29 H 1.08995 * 109.47327 * 179.23908 * 1 2 3 30 30 H 1.09001 * 109.47522 * 299.23813 * 1 2 3 31 31 H 1.08990 * 109.47384 * 239.99575 * 2 1 3 32 32 H 1.09000 * 109.46359 * 119.99246 * 2 1 3 33 33 H 1.09004 * 110.91242 * 356.03235 * 5 4 3 34 34 H 1.08996 * 110.38555 * 336.14828 * 6 5 4 35 35 H 1.09007 * 110.38750 * 98.52222 * 6 5 4 36 36 H 1.07998 * 124.45146 * 196.41082 * 7 6 5 37 37 H 1.07996 * 124.44300 * 179.97438 * 8 7 6 38 38 H 1.09003 * 110.38567 * 224.75169 * 9 8 7 39 39 H 1.09003 * 110.48414 * 102.42456 * 9 8 7 40 40 H 1.08995 * 109.47175 * 54.13665 * 14 13 12 41 41 H 1.08997 * 109.46082 * 294.16278 * 14 13 12 42 42 H 1.09006 * 109.49685 * 299.23451 * 15 14 13 43 43 H 1.08993 * 109.50773 * 179.11782 * 15 14 13 44 44 H 1.09000 * 109.52336 * 182.44097 * 16 15 14 45 45 H 1.09000 * 109.57561 * 62.28642 * 16 15 14 46 46 H 0.96997 * 119.99515 * 179.97438 * 22 21 19 47 47 H 1.09001 * 109.46381 * 65.82580 * 27 13 12 48 48 H 1.09002 * 109.46477 * 305.84538 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1961 2.1940 -1.0853 5 6 1.9237 1.8358 -2.5235 6 6 3.1525 2.1366 -3.4128 7 6 2.5715 2.6472 -4.7108 8 6 1.3228 2.9969 -4.5614 9 6 0.8628 2.7771 -3.1390 10 7 2.6435 3.3358 -0.6452 11 7 2.7543 3.3020 0.6349 12 6 2.3894 2.1239 1.0829 13 7 2.3778 1.7134 2.4064 14 6 1.3694 2.4518 3.1770 15 6 1.2832 1.8745 4.5917 16 6 2.6525 1.9865 5.2677 17 6 3.6934 1.2501 4.4199 18 1 3.4358 0.1924 4.3652 19 6 5.0548 1.4046 5.0472 20 1 5.8526 1.8800 4.4959 21 6 5.2821 0.9391 6.3250 22 7 4.3107 0.3597 6.9961 23 14 6.9699 1.1300 7.1022 24 1 7.8809 1.8096 6.1466 25 1 6.8558 1.9426 8.3399 26 1 7.5145 -0.2100 7.4384 27 6 3.7097 1.8456 3.0102 28 1 -0.3633 0.5257 -0.8830 29 1 -0.3634 -1.0275 -0.0136 30 1 -0.3634 0.5019 0.8967 31 1 1.8934 -0.5138 -0.8898 32 1 1.8932 -0.5137 0.8901 33 1 1.6205 0.7927 -2.6140 34 1 3.7780 2.9001 -2.9503 35 1 3.7277 1.2270 -3.5861 36 1 3.1177 2.7146 -5.6400 37 1 0.7003 3.3914 -5.3508 38 1 -0.1189 2.3035 -3.1263 39 1 0.8345 3.7224 -2.5969 40 1 0.3997 2.3605 2.6878 41 1 1.6515 3.5033 3.2304 42 1 0.9877 0.8265 4.5396 43 1 0.5458 2.4328 5.1683 44 1 2.6068 1.5372 6.2598 45 1 2.9314 3.0365 5.3560 46 1 4.4707 0.0318 7.8949 47 1 3.9808 2.8999 3.0646 48 1 4.4396 1.3139 2.3998 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342889529.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:37 Heat of formation + Delta-G solvation = 93.558988 kcal Electronic energy + Delta-G solvation = -27214.762322 eV Core-core repulsion = 23691.911037 eV Total energy + Delta-G solvation = -3522.851285 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.82307 -38.85766 -38.14418 -35.62077 -33.88110 -32.04119 -30.93205 -30.24801 -29.96969 -28.40801 -27.52668 -25.03195 -24.27856 -23.65366 -22.58587 -21.61389 -20.51680 -19.86789 -19.01736 -18.53283 -17.32464 -16.63298 -16.25669 -15.87994 -15.65682 -15.30055 -14.57145 -14.32263 -14.04199 -13.62096 -13.17174 -12.94424 -12.91959 -12.67517 -12.54694 -12.46338 -12.41821 -12.36457 -12.02966 -11.85227 -11.65087 -11.45024 -11.38909 -11.20441 -10.98494 -10.81405 -10.71804 -10.32369 -10.19350 -9.98536 -9.93405 -9.58310 -9.25598 -9.10146 -8.87233 -8.62216 -8.39250 -8.16126 -6.02152 -4.07897 1.87098 2.05892 2.40630 3.03263 3.29046 3.37358 3.42198 4.07247 4.14564 4.43608 4.44112 4.45170 4.57720 4.78817 4.84049 5.03808 5.09203 5.18985 5.28428 5.34559 5.41321 5.44594 5.48646 5.56712 5.57590 5.69353 5.70438 5.75781 5.85303 5.87740 5.93798 6.06308 6.13750 6.27001 6.28776 6.38068 6.39055 6.57265 6.64929 6.67702 6.77030 6.88724 7.06039 7.30734 7.40132 7.71383 7.76265 7.98361 8.09322 8.40725 8.95356 8.98046 9.56865 11.04139 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.021478 B = 0.003163 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.332272 B = 8848.969640 C = 9417.799794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.105 3.895 3 N -0.465 5.465 4 C 0.174 3.826 5 C -0.001 4.001 6 C -0.091 4.091 7 C -0.161 4.161 8 C -0.166 4.166 9 C -0.088 4.088 10 N -0.285 5.285 11 N -0.315 5.315 12 C 0.366 3.634 13 N -0.469 5.469 14 C 0.076 3.924 15 C -0.115 4.115 16 C -0.113 4.113 17 C 0.058 3.942 18 H 0.035 0.965 19 C -0.514 4.514 20 H 0.056 0.944 21 C 0.064 3.936 22 N -0.888 5.888 23 Si 0.891 3.109 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.284 1.284 27 C 0.081 3.919 28 H 0.058 0.942 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.088 0.912 32 H 0.108 0.892 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.073 0.927 36 H 0.126 0.874 37 H 0.126 0.874 38 H 0.071 0.929 39 H 0.088 0.912 40 H 0.056 0.944 41 H 0.044 0.956 42 H 0.062 0.938 43 H 0.054 0.946 44 H 0.094 0.906 45 H 0.035 0.965 46 H 0.260 0.740 47 H 0.042 0.958 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.961 -1.300 -19.140 21.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.017 4.017 3 N -0.158 5.158 4 C -0.093 4.093 5 C -0.022 4.022 6 C -0.128 4.128 7 C -0.179 4.179 8 C -0.183 4.183 9 C -0.126 4.126 10 N -0.125 5.125 11 N -0.159 5.159 12 C 0.010 3.990 13 N -0.195 5.195 14 C -0.051 4.051 15 C -0.153 4.153 16 C -0.151 4.151 17 C 0.039 3.961 18 H 0.053 0.947 19 C -0.552 4.552 20 H 0.074 0.926 21 C -0.137 4.137 22 N -0.527 5.527 23 Si 0.719 3.281 24 H -0.198 1.198 25 H -0.210 1.210 26 H -0.211 1.211 27 C -0.045 4.045 28 H 0.077 0.923 29 H 0.097 0.903 30 H 0.085 0.915 31 H 0.106 0.894 32 H 0.127 0.873 33 H 0.112 0.888 34 H 0.110 0.890 35 H 0.092 0.908 36 H 0.144 0.856 37 H 0.144 0.856 38 H 0.090 0.910 39 H 0.106 0.894 40 H 0.075 0.925 41 H 0.062 0.938 42 H 0.081 0.919 43 H 0.073 0.927 44 H 0.113 0.887 45 H 0.054 0.946 46 H 0.069 0.931 47 H 0.060 0.940 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.622 -0.481 -18.905 21.218 hybrid contribution 0.631 -0.537 0.486 0.960 sum -8.991 -1.018 -18.418 20.521 Atomic orbital electron populations 1.22120 0.93977 1.03214 1.03002 1.21841 0.95640 0.79139 1.05121 1.46446 1.49165 1.13672 1.06500 1.24310 1.04967 0.89159 0.90906 1.20281 0.97300 1.00039 0.84630 1.21419 0.96819 1.01836 0.92775 1.23229 0.96219 1.00452 0.98021 1.23198 0.97063 1.01152 0.96931 1.21390 0.97631 0.99955 0.93623 1.73920 1.16821 1.18193 1.03609 1.74699 1.21207 1.16881 1.03085 1.22723 0.99631 0.87249 0.89422 1.58951 1.10574 1.55296 0.94708 1.22080 0.92562 0.95819 0.94628 1.21708 1.00196 1.00489 0.92953 1.21698 0.91528 0.99470 1.02450 1.18699 0.94801 0.95719 0.86900 0.94707 1.21129 0.95876 1.38545 0.99692 0.92600 1.24912 0.96789 0.94931 0.97100 1.69893 1.31414 1.39578 1.11836 0.86544 0.84494 0.77743 0.79287 1.19764 1.21008 1.21052 1.22441 0.83837 1.00195 0.98029 0.92292 0.90322 0.91519 0.89381 0.87345 0.88845 0.89027 0.90847 0.85593 0.85630 0.90995 0.89415 0.92536 0.93751 0.91943 0.92688 0.88737 0.94577 0.93051 0.94001 0.92297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.47 10.24 37.16 0.38 -1.09 16 2 C 0.11 1.14 6.56 -4.04 -0.03 1.11 16 3 N -0.46 -6.85 2.81 -114.09 -0.32 -7.17 16 4 C 0.17 2.51 6.62 -154.01 -1.02 1.49 16 5 C 0.00 -0.02 3.55 -90.06 -0.32 -0.34 16 6 C -0.09 -0.90 6.37 -26.83 -0.17 -1.07 16 7 C -0.16 -1.36 10.78 -35.70 -0.38 -1.75 16 8 C -0.17 -1.37 10.78 -35.70 -0.38 -1.76 16 9 C -0.09 -0.83 6.37 -26.84 -0.17 -1.00 16 10 N -0.28 -5.13 11.78 32.99 0.39 -4.75 16 11 N -0.32 -6.34 12.15 30.31 0.37 -5.97 16 12 C 0.37 6.69 6.44 -318.88 -2.05 4.64 16 13 N -0.47 -8.88 4.64 -174.57 -0.81 -9.69 16 14 C 0.08 1.37 5.39 -3.84 -0.02 1.35 16 15 C -0.12 -2.15 6.09 -26.65 -0.16 -2.31 16 16 C -0.11 -2.60 5.03 -26.61 -0.13 -2.73 16 17 C 0.06 1.41 2.26 -91.69 -0.21 1.20 16 18 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 19 C -0.51 -13.91 8.56 -34.44 -0.29 -14.21 16 20 H 0.06 1.52 7.74 -52.48 -0.41 1.12 16 21 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 22 N -0.89 -24.72 11.37 55.43 0.63 -24.09 16 23 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 24 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 26 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 27 C 0.08 1.77 4.56 -3.84 -0.02 1.75 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.09 0.73 7.46 -51.93 -0.39 0.34 16 32 H 0.11 1.30 8.11 -51.93 -0.42 0.87 16 33 H 0.09 0.78 7.17 -51.93 -0.37 0.40 16 34 H 0.09 1.12 7.63 -51.93 -0.40 0.72 16 35 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 36 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 37 H 0.13 0.82 8.06 -52.49 -0.42 0.39 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.09 1.01 7.81 -51.93 -0.41 0.61 16 40 H 0.06 0.91 8.10 -51.93 -0.42 0.49 16 41 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.09 2.41 6.17 -51.93 -0.32 2.09 16 45 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 46 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 47 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 48 H 0.06 1.32 8.10 -51.93 -0.42 0.89 16 LS Contribution 380.77 15.07 5.74 5.74 Total: -1.00 -30.39 380.77 -12.29 -42.68 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -8.18 Total: 0.21 kcal Atomic # 6 Polarization: -7.99 SS G_CDS: -5.08 Total: -13.07 kcal Atomic # 7 Polarization: -51.92 SS G_CDS: 0.26 Total: -51.66 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -30.39 -12.29 -42.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342889529.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.236 kcal (2) G-P(sol) polarization free energy of solvation -30.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds