Wall clock time and date at job start Tue Mar 31 2020 11:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46502 * 109.46875 * 2 1 4 4 C 1.36747 * 127.13211 * 275.43528 * 3 2 1 5 5 C 1.50694 * 126.34886 * 0.02562 * 4 3 2 6 6 C 1.54636 * 111.03714 * 232.02372 * 5 4 3 7 7 C 1.51102 * 104.72572 * 217.33020 * 6 5 4 8 8 C 1.30534 * 111.10210 * 16.44080 * 7 6 5 9 9 C 1.51098 * 111.10232 * 359.97438 * 8 7 6 10 10 N 1.30291 * 107.30155 * 179.97438 * 4 3 2 11 11 N 1.28534 * 110.05715 * 359.72694 * 10 4 3 12 12 C 1.31217 * 109.85498 * 0.45178 * 11 10 4 13 13 N 1.38581 * 126.46734 * 179.81689 * 12 11 10 14 14 C 1.46827 * 110.98022 * 66.93006 * 13 12 11 15 15 C 1.53040 * 109.51755 * 174.15437 * 14 13 12 16 16 C 1.53118 * 109.27845 * 59.17030 * 15 14 13 17 17 C 1.53121 * 109.16493 * 302.34977 * 16 15 14 18 18 H 1.09002 * 109.49905 * 297.71279 * 17 16 15 19 19 C 1.50696 * 109.53466 * 177.61566 * 17 16 15 20 20 H 1.08005 * 119.99773 * 240.17575 * 19 17 16 21 21 C 1.37875 * 120.00449 * 60.17593 * 19 17 16 22 22 N 1.31519 * 119.99656 * 0.02562 * 21 19 17 23 23 Si 1.86793 * 120.00131 * 179.97438 * 21 19 17 24 24 H 1.48495 * 109.47355 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.46982 * 120.00382 * 23 21 19 26 26 H 1.48503 * 109.47292 * 240.00246 * 23 21 19 27 27 C 1.46837 * 111.00404 * 302.70916 * 13 12 11 28 28 H 1.09000 * 109.47045 * 59.23446 * 1 2 3 29 29 H 1.08995 * 109.47327 * 179.23908 * 1 2 3 30 30 H 1.09001 * 109.47522 * 299.23813 * 1 2 3 31 31 H 1.08990 * 109.47384 * 239.99575 * 2 1 3 32 32 H 1.09000 * 109.46359 * 119.99246 * 2 1 3 33 33 H 1.09004 * 110.91242 * 356.03235 * 5 4 3 34 34 H 1.08996 * 110.38555 * 336.14828 * 6 5 4 35 35 H 1.09007 * 110.38750 * 98.52222 * 6 5 4 36 36 H 1.07998 * 124.45146 * 196.41082 * 7 6 5 37 37 H 1.07996 * 124.44300 * 179.97438 * 8 7 6 38 38 H 1.09003 * 110.38567 * 224.75169 * 9 8 7 39 39 H 1.09003 * 110.48414 * 102.42456 * 9 8 7 40 40 H 1.08995 * 109.47175 * 54.13665 * 14 13 12 41 41 H 1.08997 * 109.46082 * 294.16278 * 14 13 12 42 42 H 1.09006 * 109.49685 * 299.23451 * 15 14 13 43 43 H 1.08993 * 109.50773 * 179.11782 * 15 14 13 44 44 H 1.09000 * 109.52336 * 182.44097 * 16 15 14 45 45 H 1.09000 * 109.57561 * 62.28642 * 16 15 14 46 46 H 0.96997 * 119.99515 * 179.97438 * 22 21 19 47 47 H 1.09001 * 109.46381 * 65.82580 * 27 13 12 48 48 H 1.09002 * 109.46477 * 305.84538 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1961 2.1940 -1.0853 5 6 1.9237 1.8358 -2.5235 6 6 3.1525 2.1366 -3.4128 7 6 2.5715 2.6472 -4.7108 8 6 1.3228 2.9969 -4.5614 9 6 0.8628 2.7771 -3.1390 10 7 2.6435 3.3358 -0.6452 11 7 2.7543 3.3020 0.6349 12 6 2.3894 2.1239 1.0829 13 7 2.3778 1.7134 2.4064 14 6 1.3694 2.4518 3.1770 15 6 1.2832 1.8745 4.5917 16 6 2.6525 1.9865 5.2677 17 6 3.6934 1.2501 4.4199 18 1 3.4358 0.1924 4.3652 19 6 5.0548 1.4046 5.0472 20 1 5.8526 1.8800 4.4959 21 6 5.2821 0.9391 6.3250 22 7 4.3107 0.3597 6.9961 23 14 6.9699 1.1300 7.1022 24 1 7.8809 1.8096 6.1466 25 1 6.8558 1.9426 8.3399 26 1 7.5145 -0.2100 7.4384 27 6 3.7097 1.8456 3.0102 28 1 -0.3633 0.5257 -0.8830 29 1 -0.3634 -1.0275 -0.0136 30 1 -0.3634 0.5019 0.8967 31 1 1.8934 -0.5138 -0.8898 32 1 1.8932 -0.5137 0.8901 33 1 1.6205 0.7927 -2.6140 34 1 3.7780 2.9001 -2.9503 35 1 3.7277 1.2270 -3.5861 36 1 3.1177 2.7146 -5.6400 37 1 0.7003 3.3914 -5.3508 38 1 -0.1189 2.3035 -3.1263 39 1 0.8345 3.7224 -2.5969 40 1 0.3997 2.3605 2.6878 41 1 1.6515 3.5033 3.2304 42 1 0.9877 0.8265 4.5396 43 1 0.5458 2.4328 5.1683 44 1 2.6068 1.5372 6.2598 45 1 2.9314 3.0365 5.3560 46 1 4.4707 0.0318 7.8949 47 1 3.9808 2.8999 3.0646 48 1 4.4396 1.3139 2.3998 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342889529.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:36 Heat of formation + Delta-G solvation = 79.458395 kcal Electronic energy + Delta-G solvation = -27215.373769 eV Core-core repulsion = 23691.911037 eV Total energy + Delta-G solvation = -3523.462732 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.09965 -40.05959 -39.35080 -36.70394 -35.71756 -33.73517 -31.96943 -31.82818 -31.26676 -29.13705 -28.68958 -27.02923 -25.56716 -24.91459 -23.62987 -23.34826 -21.87781 -20.98605 -20.17582 -19.67189 -18.81282 -18.06192 -17.45012 -17.02080 -16.91990 -16.46685 -16.42592 -15.62629 -15.38484 -15.04685 -14.61707 -14.51468 -14.26388 -14.04797 -13.72090 -13.60883 -13.34022 -13.26877 -13.01419 -12.89124 -12.84734 -12.74176 -12.63510 -12.46143 -12.43073 -12.23319 -12.06797 -11.95297 -11.84348 -11.65036 -11.41532 -11.12711 -11.09832 -10.78608 -10.42687 -10.02800 -9.79346 -9.74916 -8.11535 -6.24578 0.64279 1.22263 1.39215 1.40324 1.41989 1.52953 1.71806 2.41143 2.73833 3.16104 3.16238 3.59441 3.68081 3.75589 3.85866 4.01501 4.05302 4.09394 4.19464 4.34142 4.34930 4.38377 4.39878 4.48210 4.54468 4.61524 4.67425 4.77652 4.78480 4.82657 4.83033 4.87547 4.92846 4.96451 5.04575 5.09316 5.13583 5.18664 5.26355 5.27122 5.42909 5.60406 5.64044 5.64539 5.73864 5.97178 6.03073 6.09916 6.30734 6.36191 6.84119 7.42973 7.66636 8.93558 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.021478 B = 0.003163 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.332272 B = 8848.969640 C = 9417.799794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.095 3.905 3 N -0.459 5.459 4 C 0.197 3.803 5 C -0.003 4.003 6 C -0.093 4.093 7 C -0.164 4.164 8 C -0.163 4.163 9 C -0.087 4.087 10 N -0.322 5.322 11 N -0.353 5.353 12 C 0.346 3.654 13 N -0.460 5.460 14 C 0.081 3.919 15 C -0.103 4.103 16 C -0.107 4.107 17 C 0.061 3.939 18 H 0.011 0.989 19 C -0.539 4.539 20 H 0.045 0.955 21 C 0.022 3.978 22 N -0.909 5.909 23 Si 0.952 3.048 24 H -0.273 1.273 25 H -0.278 1.278 26 H -0.277 1.277 27 C 0.101 3.899 28 H 0.069 0.931 29 H 0.105 0.895 30 H 0.045 0.955 31 H 0.122 0.878 32 H 0.094 0.906 33 H 0.125 0.875 34 H 0.062 0.938 35 H 0.087 0.913 36 H 0.145 0.855 37 H 0.147 0.853 38 H 0.093 0.907 39 H 0.062 0.938 40 H 0.083 0.917 41 H 0.030 0.970 42 H 0.066 0.934 43 H 0.081 0.919 44 H 0.069 0.931 45 H 0.022 0.978 46 H 0.263 0.737 47 H 0.021 0.979 48 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.342 -2.489 -21.308 24.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.026 4.026 3 N -0.151 5.151 4 C -0.071 4.071 5 C -0.024 4.024 6 C -0.131 4.131 7 C -0.182 4.182 8 C -0.181 4.181 9 C -0.125 4.125 10 N -0.162 5.162 11 N -0.197 5.197 12 C -0.012 4.012 13 N -0.186 5.186 14 C -0.046 4.046 15 C -0.141 4.141 16 C -0.145 4.145 17 C 0.042 3.958 18 H 0.029 0.971 19 C -0.577 4.577 20 H 0.063 0.937 21 C -0.178 4.178 22 N -0.548 5.548 23 Si 0.777 3.223 24 H -0.198 1.198 25 H -0.204 1.204 26 H -0.203 1.203 27 C -0.026 4.026 28 H 0.088 0.912 29 H 0.124 0.876 30 H 0.065 0.935 31 H 0.140 0.860 32 H 0.113 0.887 33 H 0.143 0.857 34 H 0.080 0.920 35 H 0.106 0.894 36 H 0.163 0.837 37 H 0.165 0.835 38 H 0.111 0.889 39 H 0.080 0.920 40 H 0.101 0.899 41 H 0.048 0.952 42 H 0.084 0.916 43 H 0.100 0.900 44 H 0.087 0.913 45 H 0.041 0.959 46 H 0.072 0.928 47 H 0.039 0.961 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -11.021 -1.683 -21.085 23.851 hybrid contribution 1.050 -0.188 1.080 1.518 sum -9.971 -1.871 -20.005 22.430 Atomic orbital electron populations 1.22094 0.92093 1.04868 1.02479 1.22240 0.97171 0.76986 1.06157 1.46676 1.48332 1.14791 1.05299 1.25102 1.01804 0.87885 0.92318 1.20614 0.98043 1.01990 0.81778 1.21417 0.96517 1.01764 0.93391 1.23338 0.96369 1.00589 0.97926 1.23357 0.97293 1.00822 0.96597 1.21384 0.98436 0.98679 0.94040 1.73846 1.19091 1.20436 1.02867 1.74582 1.22268 1.18391 1.04414 1.22581 1.01274 0.87780 0.89523 1.58869 1.08941 1.55392 0.95381 1.22069 0.93402 0.94756 0.94367 1.21586 0.97994 1.01290 0.93227 1.21511 0.93799 0.97894 1.01292 1.18566 0.94244 0.94511 0.88438 0.97097 1.21421 0.96968 1.38981 1.00353 0.93702 1.25602 1.00161 0.94587 0.97439 1.69997 1.32909 1.39811 1.12090 0.85606 0.80416 0.77910 0.78324 1.19807 1.20414 1.20253 1.22002 0.85593 0.98240 0.96789 0.91209 0.87597 0.93543 0.86013 0.88711 0.85690 0.91959 0.89408 0.83716 0.83492 0.88864 0.91976 0.89895 0.95167 0.91562 0.90026 0.91264 0.95906 0.92805 0.96096 0.93417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.32 10.24 71.98 0.74 -1.59 16 2 C 0.10 1.84 6.56 86.38 0.57 2.41 16 3 N -0.46 -13.05 2.81 -514.86 -1.45 -14.49 16 4 C 0.20 5.51 6.62 137.64 0.91 6.42 16 5 C 0.00 -0.06 3.55 -10.43 -0.04 -0.10 16 6 C -0.09 -1.68 6.37 30.53 0.19 -1.49 16 7 C -0.16 -2.34 10.78 26.25 0.28 -2.06 16 8 C -0.16 -2.22 10.78 26.25 0.28 -1.93 16 9 C -0.09 -1.44 6.37 30.52 0.19 -1.25 16 10 N -0.32 -11.84 11.78 -49.54 -0.58 -12.42 16 11 N -0.35 -14.63 12.15 -58.01 -0.70 -15.33 16 12 C 0.35 12.80 6.44 260.11 1.68 14.48 16 13 N -0.46 -17.74 4.64 -706.23 -3.27 -21.02 16 14 C 0.08 2.90 5.39 86.33 0.47 3.36 16 15 C -0.10 -3.80 6.09 30.65 0.19 -3.61 16 16 C -0.11 -5.04 5.03 30.67 0.15 -4.88 16 17 C 0.06 3.12 2.26 -11.49 -0.03 3.09 16 18 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 19 C -0.54 -30.25 8.56 25.60 0.22 -30.03 16 20 H 0.04 2.55 7.74 -2.91 -0.02 2.53 16 21 C 0.02 1.20 5.30 84.65 0.45 1.65 16 22 N -0.91 -51.50 11.37 21.45 0.24 -51.25 16 23 Si 0.95 43.96 29.54 68.60 2.03 45.98 16 24 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 25 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 26 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 27 C 0.10 4.61 4.56 86.33 0.39 5.01 16 28 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.12 1.54 7.46 -2.39 -0.02 1.52 16 32 H 0.09 2.14 8.11 -2.39 -0.02 2.12 16 33 H 0.13 1.52 7.17 -2.39 -0.02 1.50 16 34 H 0.06 1.52 7.63 -2.39 -0.02 1.50 16 35 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 36 H 0.15 1.50 8.06 -2.91 -0.02 1.48 16 37 H 0.15 1.38 8.06 -2.91 -0.02 1.36 16 38 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.06 1.38 7.81 -2.39 -0.02 1.36 16 40 H 0.08 2.56 8.10 -2.39 -0.02 2.55 16 41 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.07 2.41 8.14 -2.38 -0.02 2.39 16 43 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 44 H 0.07 3.63 6.17 -2.39 -0.01 3.61 16 45 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 46 H 0.26 14.08 8.31 -92.71 -0.77 13.31 16 47 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 48 H 0.05 2.24 8.10 -2.39 -0.02 2.22 16 Total: -1.00 -69.33 380.77 3.83 -65.49 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: 0.92 Total: 13.57 kcal Atomic # 6 Polarization: -17.18 SS G_CDS: 6.65 Total: -10.53 kcal Atomic # 7 Polarization: -108.75 SS G_CDS: -5.76 Total: -114.52 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.98 kcal Total: -69.33 3.83 -65.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342889529.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.950 kcal (2) G-P(sol) polarization free energy of solvation -69.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds