Wall clock time and date at job start Tue Mar 31 2020 11:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50703 * 120.00467 * 2 1 4 4 C 1.50705 * 119.99623 * 180.02562 * 2 1 3 5 5 N 1.46497 * 109.46907 * 95.00112 * 4 2 1 6 6 C 1.36744 * 127.13692 * 264.34951 * 5 4 2 7 7 C 1.50696 * 126.34539 * 359.94352 * 6 5 4 8 8 C 1.53000 * 109.46973 * 90.00174 * 7 6 5 9 9 C 1.53004 * 109.46961 * 179.97438 * 8 7 6 10 10 C 1.50701 * 109.47118 * 180.02562 * 9 8 7 11 11 H 1.08001 * 119.99307 * 0.02562 * 10 9 8 12 12 C 1.37876 * 119.99744 * 179.97438 * 10 9 8 13 13 N 1.31507 * 120.00213 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99458 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.47256 * 90.00327 * 14 12 10 16 16 H 1.48500 * 109.46888 * 209.99818 * 14 12 10 17 17 H 1.48498 * 109.47501 * 330.00084 * 14 12 10 18 18 N 1.30294 * 107.30495 * 179.97438 * 6 5 4 19 19 N 1.28533 * 110.05661 * 359.72309 * 18 6 5 20 20 C 1.31221 * 109.85459 * 0.45643 * 19 18 6 21 21 N 1.38583 * 126.46722 * 179.82443 * 20 19 18 22 22 C 1.46857 * 110.99101 * 272.80892 * 21 20 19 23 23 C 1.50150 * 110.26943 * 174.31827 * 22 21 20 24 24 C 1.29819 * 123.28588 * 342.95716 * 23 22 21 25 25 C 1.50311 * 122.89049 * 0.34755 * 24 23 22 26 26 C 1.47231 * 111.00395 * 35.72725 * 21 20 19 27 27 H 1.08003 * 119.99301 * 359.97438 * 1 2 3 28 28 H 1.07994 * 120.00096 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46891 * 240.00215 * 3 2 1 30 30 H 1.08996 * 109.46855 * 0.02562 * 3 2 1 31 31 H 1.09000 * 109.46928 * 120.00116 * 3 2 1 32 32 H 1.08996 * 109.47382 * 335.00081 * 4 2 1 33 33 H 1.09001 * 109.46893 * 215.00067 * 4 2 1 34 34 H 1.09003 * 109.47007 * 210.00052 * 7 6 5 35 35 H 1.09002 * 109.47198 * 329.99980 * 7 6 5 36 36 H 1.08990 * 109.47339 * 299.99994 * 8 7 6 37 37 H 1.09003 * 109.46593 * 60.00047 * 8 7 6 38 38 H 1.09003 * 109.47243 * 300.00015 * 9 8 7 39 39 H 1.09002 * 109.46974 * 59.99951 * 9 8 7 40 40 H 0.97003 * 119.99971 * 179.97438 * 13 12 10 41 41 H 1.09002 * 109.33508 * 54.08098 * 22 21 20 42 42 H 1.09000 * 109.21041 * 294.47877 * 22 21 20 43 43 H 1.08000 * 118.35641 * 162.92758 * 23 22 21 44 44 H 1.08002 * 118.55663 * 180.37496 * 24 23 22 45 45 H 1.09000 * 109.42723 * 223.45099 * 25 24 23 46 46 H 1.08997 * 109.39321 * 103.57859 * 25 24 23 47 47 H 1.08998 * 109.63964 * 48.11150 * 26 21 20 48 48 H 1.09003 * 109.63341 * 287.49911 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.0635 -1.3052 -0.0006 5 7 2.4118 -1.6673 -1.3767 6 6 1.7201 -2.5007 -2.2114 7 6 0.4419 -3.2300 -1.8870 8 6 -0.7547 -2.3546 -2.2648 9 6 -2.0525 -3.0953 -1.9360 10 6 -3.2311 -2.2333 -2.3086 11 1 -3.0705 -1.2552 -2.7375 12 6 -4.5143 -2.6938 -2.1031 13 7 -4.7097 -3.8854 -1.5823 14 14 -5.9752 -1.6250 -2.5643 15 1 -6.3670 -1.9018 -3.9697 16 1 -7.1156 -1.9299 -1.6634 17 1 -5.6045 -0.1936 -2.4266 18 7 2.3714 -2.5480 -3.3389 19 7 3.4164 -1.8023 -3.2759 20 6 3.4936 -1.2422 -2.0917 21 7 4.4835 -0.3777 -1.6523 22 6 5.6182 -1.1201 -1.0886 23 6 6.7367 -0.1790 -0.7453 24 6 6.8190 1.0298 -1.2114 25 6 5.7946 1.6177 -2.1410 26 6 4.9411 0.4987 -2.7434 27 1 -0.5399 0.9354 0.0004 28 1 -0.5400 -0.9352 -0.0004 29 1 2.6903 1.3627 -0.8900 30 1 1.3554 2.1335 0.0005 31 1 2.6903 1.3627 0.8900 32 1 1.4385 -2.0857 0.4333 33 1 2.9742 -1.1992 0.5889 34 1 0.4024 -4.1622 -2.4506 35 1 0.4093 -3.4491 -0.8197 36 1 -0.7152 -1.4225 -1.7013 37 1 -0.7220 -2.1357 -3.3321 38 1 -2.0918 -4.0273 -2.4999 39 1 -2.0853 -3.3147 -0.8688 40 1 -5.6126 -4.2093 -1.4373 41 1 5.9710 -1.8490 -1.8183 42 1 5.2943 -1.6398 -0.1868 43 1 7.5112 -0.5250 -0.0769 44 1 7.6608 1.6398 -0.9186 45 1 6.2994 2.1593 -2.9410 46 1 5.1542 2.3038 -1.5867 47 1 4.0793 0.9293 -3.2533 48 1 5.5383 -0.0776 -3.4500 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001343487027.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:34 Heat of formation + Delta-G solvation = 108.551051 kcal Electronic energy + Delta-G solvation = -27050.754740 eV Core-core repulsion = 23528.553560 eV Total energy + Delta-G solvation = -3522.201180 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.86889 -39.25578 -36.88124 -34.98248 -33.95033 -33.30698 -32.26671 -31.21063 -29.55824 -27.56310 -27.15619 -26.66132 -24.96673 -23.89094 -23.59349 -21.18825 -20.93531 -20.05450 -18.81996 -18.12059 -17.51835 -16.56127 -16.29718 -16.08477 -15.31540 -15.06258 -14.69217 -14.54739 -14.47336 -14.26703 -13.94946 -13.70723 -13.55197 -13.14826 -12.72811 -12.58893 -12.39515 -12.10604 -11.99766 -11.95436 -11.55256 -11.50992 -11.42196 -11.33527 -10.91244 -10.86148 -10.75450 -10.56753 -10.45326 -9.97928 -9.74688 -9.52623 -9.42318 -9.22643 -9.14865 -9.05238 -8.43828 -8.36240 -6.01865 -4.03914 1.74290 1.88916 2.00268 2.58927 3.01588 3.31382 3.37866 3.40819 3.62644 4.35120 4.44443 4.50952 4.57713 4.65001 4.67831 4.84768 4.93423 5.06679 5.10526 5.12099 5.22473 5.26396 5.29661 5.34535 5.42116 5.51834 5.56397 5.65206 5.68033 5.78546 5.84804 5.91897 5.96435 6.01572 6.07630 6.10311 6.23578 6.42118 6.55409 6.56604 6.64059 6.68410 6.77116 6.79266 7.04731 7.26663 7.64074 7.76797 7.97609 8.40121 8.93416 9.02686 9.60411 11.09391 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.022036 B = 0.003053 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.363912 B = 9168.933544 C = 9616.802757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.168 4.168 3 C -0.108 4.108 4 C 0.152 3.848 5 N -0.460 5.460 6 C 0.207 3.793 7 C -0.037 4.037 8 C -0.111 4.111 9 C 0.024 3.976 10 C -0.518 4.518 11 H 0.054 0.946 12 C 0.058 3.942 13 N -0.895 5.895 14 Si 0.890 3.110 15 H -0.280 1.280 16 H -0.287 1.287 17 H -0.274 1.274 18 N -0.292 5.292 19 N -0.316 5.316 20 C 0.331 3.669 21 N -0.450 5.450 22 C 0.089 3.911 23 C -0.159 4.159 24 C -0.142 4.142 25 C -0.089 4.089 26 C 0.068 3.932 27 H 0.104 0.896 28 H 0.116 0.884 29 H 0.070 0.930 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.100 0.900 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.076 0.924 36 H 0.057 0.943 37 H 0.055 0.945 38 H 0.019 0.981 39 H 0.016 0.984 40 H 0.260 0.740 41 H 0.059 0.941 42 H 0.084 0.916 43 H 0.115 0.885 44 H 0.109 0.891 45 H 0.082 0.918 46 H 0.083 0.917 47 H 0.083 0.917 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.332 9.564 6.345 25.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.169 4.169 3 C -0.165 4.165 4 C 0.030 3.970 5 N -0.153 5.153 6 C -0.060 4.060 7 C -0.077 4.077 8 C -0.150 4.150 9 C -0.013 4.013 10 C -0.557 4.557 11 H 0.073 0.927 12 C -0.143 4.143 13 N -0.534 5.534 14 Si 0.718 3.282 15 H -0.206 1.206 16 H -0.213 1.213 17 H -0.199 1.199 18 N -0.132 5.132 19 N -0.160 5.160 20 C -0.026 4.026 21 N -0.175 5.175 22 C -0.037 4.037 23 C -0.177 4.177 24 C -0.161 4.161 25 C -0.126 4.126 26 C -0.059 4.059 27 H 0.123 0.877 28 H 0.134 0.866 29 H 0.089 0.911 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.119 0.881 33 H 0.114 0.886 34 H 0.115 0.885 35 H 0.094 0.906 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.037 0.963 39 H 0.034 0.966 40 H 0.070 0.930 41 H 0.077 0.923 42 H 0.102 0.898 43 H 0.133 0.867 44 H 0.127 0.873 45 H 0.100 0.900 46 H 0.101 0.899 47 H 0.101 0.899 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 22.380 9.362 5.377 24.848 hybrid contribution -0.878 0.466 0.611 1.167 sum 21.502 9.829 5.988 24.389 Atomic orbital electron populations 1.24220 0.94970 1.03622 0.95535 1.21677 0.95392 0.95013 1.04776 1.20762 0.99812 0.93524 1.02383 1.20770 1.01040 0.95934 0.79278 1.46385 1.18781 1.36121 1.13969 1.25324 0.97970 0.95409 0.87278 1.20367 0.86540 0.98738 1.02011 1.21837 0.93740 0.98242 1.01182 1.19087 0.89720 0.95661 0.96819 1.21201 0.90886 1.02311 1.41282 0.92747 1.24995 0.99005 0.95056 0.95264 1.69952 1.21430 1.17587 1.44472 0.86627 0.82358 0.80830 0.78403 1.20642 1.21251 1.19908 1.74047 1.02801 1.17510 1.18837 1.74544 1.15339 1.09936 1.16149 1.22215 0.91485 0.99271 0.89586 1.59075 1.08546 1.17245 1.32634 1.21038 0.88270 0.94740 0.99699 1.22087 0.98431 0.95784 1.01446 1.22175 0.99016 0.96389 0.98494 1.20622 0.96096 0.97478 0.98414 1.22155 0.99440 0.93359 0.90929 0.87731 0.86636 0.91103 0.92377 0.91972 0.88136 0.88597 0.88500 0.90565 0.92425 0.92577 0.96277 0.96573 0.92996 0.92253 0.89771 0.86673 0.87331 0.89987 0.89856 0.89876 0.92412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 12.46 29.01 0.36 -1.56 16 2 C -0.17 -2.00 5.64 -101.06 -0.57 -2.57 16 3 C -0.11 -1.13 10.12 36.01 0.36 -0.76 16 4 C 0.15 1.75 6.23 -5.19 -0.03 1.72 16 5 N -0.46 -6.64 2.79 -115.37 -0.32 -6.96 16 6 C 0.21 3.52 7.32 -154.01 -1.13 2.40 16 7 C -0.04 -0.62 5.58 -27.88 -0.16 -0.77 16 8 C -0.11 -2.23 5.13 -26.73 -0.14 -2.37 16 9 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 10 C -0.52 -14.32 9.11 -34.44 -0.31 -14.63 16 11 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 12 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 13 N -0.90 -26.36 13.29 55.43 0.74 -25.63 16 14 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 15 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 16 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 17 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 18 N -0.29 -5.62 12.18 32.99 0.40 -5.22 16 19 N -0.32 -5.61 11.75 30.32 0.36 -5.25 16 20 C 0.33 4.85 6.68 -318.87 -2.13 2.72 16 21 N -0.45 -5.09 4.16 -175.91 -0.73 -5.82 16 22 C 0.09 0.86 5.59 -5.27 -0.03 0.83 16 23 C -0.16 -1.22 9.92 -35.96 -0.36 -1.57 16 24 C -0.14 -1.02 9.94 -35.88 -0.36 -1.38 16 25 C -0.09 -0.67 6.32 -28.03 -0.18 -0.84 16 26 C 0.07 0.71 5.18 -3.60 -0.02 0.69 16 27 H 0.10 1.31 7.83 -52.48 -0.41 0.90 16 28 H 0.12 1.70 6.49 -52.49 -0.34 1.36 16 29 H 0.07 0.81 7.55 -51.93 -0.39 0.41 16 30 H 0.06 0.58 7.78 -51.93 -0.40 0.17 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.10 1.08 6.94 -51.93 -0.36 0.72 16 33 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.10 1.64 8.14 -51.93 -0.42 1.21 16 35 H 0.08 1.12 7.18 -51.93 -0.37 0.75 16 36 H 0.06 1.11 4.76 -51.93 -0.25 0.86 16 37 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 41 H 0.06 0.64 8.10 -51.93 -0.42 0.22 16 42 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 44 H 0.11 0.61 8.06 -52.49 -0.42 0.18 16 45 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 46 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.08 0.96 8.04 -51.93 -0.42 0.54 16 48 H 0.06 0.65 8.08 -51.93 -0.42 0.23 16 LS Contribution 388.86 15.07 5.86 5.86 Total: -1.00 -31.99 388.86 -11.61 -43.60 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -7.98 Total: -0.92 kcal Atomic # 6 Polarization: -11.20 SS G_CDS: -4.91 Total: -16.11 kcal Atomic # 7 Polarization: -49.32 SS G_CDS: 0.44 Total: -48.88 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.99 -11.61 -43.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343487027.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.154 kcal (2) G-P(sol) polarization free energy of solvation -31.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds