Wall clock time and date at job start Tue Mar 31 2020 11:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50703 * 120.00467 * 2 1 4 4 C 1.50705 * 119.99623 * 180.02562 * 2 1 3 5 5 N 1.46497 * 109.46907 * 95.00112 * 4 2 1 6 6 C 1.36744 * 127.13692 * 264.34951 * 5 4 2 7 7 C 1.50696 * 126.34539 * 359.94352 * 6 5 4 8 8 C 1.53000 * 109.46973 * 90.00174 * 7 6 5 9 9 C 1.53004 * 109.46961 * 179.97438 * 8 7 6 10 10 C 1.50701 * 109.47118 * 180.02562 * 9 8 7 11 11 H 1.08001 * 119.99307 * 0.02562 * 10 9 8 12 12 C 1.37876 * 119.99744 * 179.97438 * 10 9 8 13 13 N 1.31507 * 120.00213 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99458 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.47256 * 90.00327 * 14 12 10 16 16 H 1.48500 * 109.46888 * 209.99818 * 14 12 10 17 17 H 1.48498 * 109.47501 * 330.00084 * 14 12 10 18 18 N 1.30294 * 107.30495 * 179.97438 * 6 5 4 19 19 N 1.28533 * 110.05661 * 359.72309 * 18 6 5 20 20 C 1.31221 * 109.85459 * 0.45643 * 19 18 6 21 21 N 1.38583 * 126.46722 * 179.82443 * 20 19 18 22 22 C 1.46857 * 110.99101 * 272.80892 * 21 20 19 23 23 C 1.50150 * 110.26943 * 174.31827 * 22 21 20 24 24 C 1.29819 * 123.28588 * 342.95716 * 23 22 21 25 25 C 1.50311 * 122.89049 * 0.34755 * 24 23 22 26 26 C 1.47231 * 111.00395 * 35.72725 * 21 20 19 27 27 H 1.08003 * 119.99301 * 359.97438 * 1 2 3 28 28 H 1.07994 * 120.00096 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46891 * 240.00215 * 3 2 1 30 30 H 1.08996 * 109.46855 * 0.02562 * 3 2 1 31 31 H 1.09000 * 109.46928 * 120.00116 * 3 2 1 32 32 H 1.08996 * 109.47382 * 335.00081 * 4 2 1 33 33 H 1.09001 * 109.46893 * 215.00067 * 4 2 1 34 34 H 1.09003 * 109.47007 * 210.00052 * 7 6 5 35 35 H 1.09002 * 109.47198 * 329.99980 * 7 6 5 36 36 H 1.08990 * 109.47339 * 299.99994 * 8 7 6 37 37 H 1.09003 * 109.46593 * 60.00047 * 8 7 6 38 38 H 1.09003 * 109.47243 * 300.00015 * 9 8 7 39 39 H 1.09002 * 109.46974 * 59.99951 * 9 8 7 40 40 H 0.97003 * 119.99971 * 179.97438 * 13 12 10 41 41 H 1.09002 * 109.33508 * 54.08098 * 22 21 20 42 42 H 1.09000 * 109.21041 * 294.47877 * 22 21 20 43 43 H 1.08000 * 118.35641 * 162.92758 * 23 22 21 44 44 H 1.08002 * 118.55663 * 180.37496 * 24 23 22 45 45 H 1.09000 * 109.42723 * 223.45099 * 25 24 23 46 46 H 1.08997 * 109.39321 * 103.57859 * 25 24 23 47 47 H 1.08998 * 109.63964 * 48.11150 * 26 21 20 48 48 H 1.09003 * 109.63341 * 287.49911 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.0635 -1.3052 -0.0006 5 7 2.4118 -1.6673 -1.3767 6 6 1.7201 -2.5007 -2.2114 7 6 0.4419 -3.2300 -1.8870 8 6 -0.7547 -2.3546 -2.2648 9 6 -2.0525 -3.0953 -1.9360 10 6 -3.2311 -2.2333 -2.3086 11 1 -3.0705 -1.2552 -2.7375 12 6 -4.5143 -2.6938 -2.1031 13 7 -4.7097 -3.8854 -1.5823 14 14 -5.9752 -1.6250 -2.5643 15 1 -6.3670 -1.9018 -3.9697 16 1 -7.1156 -1.9299 -1.6634 17 1 -5.6045 -0.1936 -2.4266 18 7 2.3714 -2.5480 -3.3389 19 7 3.4164 -1.8023 -3.2759 20 6 3.4936 -1.2422 -2.0917 21 7 4.4835 -0.3777 -1.6523 22 6 5.6182 -1.1201 -1.0886 23 6 6.7367 -0.1790 -0.7453 24 6 6.8190 1.0298 -1.2114 25 6 5.7946 1.6177 -2.1410 26 6 4.9411 0.4987 -2.7434 27 1 -0.5399 0.9354 0.0004 28 1 -0.5400 -0.9352 -0.0004 29 1 2.6903 1.3627 -0.8900 30 1 1.3554 2.1335 0.0005 31 1 2.6903 1.3627 0.8900 32 1 1.4385 -2.0857 0.4333 33 1 2.9742 -1.1992 0.5889 34 1 0.4024 -4.1622 -2.4506 35 1 0.4093 -3.4491 -0.8197 36 1 -0.7152 -1.4225 -1.7013 37 1 -0.7220 -2.1357 -3.3321 38 1 -2.0918 -4.0273 -2.4999 39 1 -2.0853 -3.3147 -0.8688 40 1 -5.6126 -4.2093 -1.4373 41 1 5.9710 -1.8490 -1.8183 42 1 5.2943 -1.6398 -0.1868 43 1 7.5112 -0.5250 -0.0769 44 1 7.6608 1.6398 -0.9186 45 1 6.2994 2.1593 -2.9410 46 1 5.1542 2.3038 -1.5867 47 1 4.0793 0.9293 -3.2533 48 1 5.5383 -0.0776 -3.4500 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001343487027.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:33 Heat of formation + Delta-G solvation = 93.998358 kcal Electronic energy + Delta-G solvation = -27051.385792 eV Core-core repulsion = 23528.553560 eV Total energy + Delta-G solvation = -3522.832232 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.11008 -40.07192 -37.95748 -36.58609 -34.98785 -34.61388 -33.93316 -31.91364 -31.09211 -28.70725 -28.45427 -27.78804 -25.91823 -25.51295 -24.49045 -22.56709 -22.26338 -21.54136 -19.83598 -18.87148 -18.50636 -18.34589 -17.60729 -17.19452 -16.56252 -16.22115 -15.97735 -15.70710 -15.55045 -15.33017 -15.20770 -14.78223 -14.40294 -14.27854 -13.99247 -13.84859 -13.45182 -13.36399 -13.23191 -13.06836 -12.87362 -12.73191 -12.69661 -12.61821 -12.43811 -12.29164 -12.20814 -11.74215 -11.57587 -11.46603 -11.40395 -11.22558 -11.07367 -10.53324 -10.39390 -10.14919 -9.96965 -9.59984 -8.18217 -6.27637 0.58420 0.86804 1.35451 1.40337 1.41428 1.51735 1.54559 1.70481 2.41993 2.65019 3.15635 3.33682 3.56455 3.67479 3.70882 3.84614 3.92558 4.12132 4.15248 4.19734 4.27342 4.31777 4.36768 4.39474 4.47140 4.52473 4.60005 4.66266 4.72412 4.85782 4.88039 4.89959 4.96719 5.04134 5.05814 5.08220 5.12770 5.17566 5.19719 5.38710 5.52793 5.58417 5.61620 5.70716 5.75616 5.79964 5.87888 5.97570 6.18481 6.27779 6.87820 7.40927 7.64857 8.93231 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.022036 B = 0.003053 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.363912 B = 9168.933544 C = 9616.802757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.157 4.157 3 C -0.104 4.104 4 C 0.144 3.856 5 N -0.455 5.455 6 C 0.200 3.800 7 C -0.026 4.026 8 C -0.094 4.094 9 C 0.031 3.969 10 C -0.538 4.538 11 H 0.053 0.947 12 C 0.005 3.995 13 N -0.929 5.929 14 Si 0.956 3.044 15 H -0.277 1.277 16 H -0.280 1.280 17 H -0.264 1.264 18 N -0.328 5.328 19 N -0.351 5.351 20 C 0.349 3.651 21 N -0.441 5.441 22 C 0.088 3.912 23 C -0.167 4.167 24 C -0.139 4.139 25 C -0.083 4.083 26 C 0.066 3.934 27 H 0.109 0.891 28 H 0.097 0.903 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.082 0.918 32 H 0.109 0.891 33 H 0.122 0.878 34 H 0.092 0.908 35 H 0.100 0.900 36 H 0.067 0.933 37 H 0.035 0.965 38 H -0.007 1.007 39 H 0.007 0.993 40 H 0.263 0.737 41 H 0.043 0.957 42 H 0.092 0.908 43 H 0.137 0.863 44 H 0.133 0.867 45 H 0.100 0.900 46 H 0.090 0.910 47 H 0.066 0.934 48 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.867 11.631 7.811 27.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.158 4.158 3 C -0.161 4.161 4 C 0.023 3.977 5 N -0.147 5.147 6 C -0.068 4.068 7 C -0.066 4.066 8 C -0.133 4.133 9 C -0.006 4.006 10 C -0.576 4.576 11 H 0.071 0.929 12 C -0.193 4.193 13 N -0.569 5.569 14 Si 0.781 3.219 15 H -0.203 1.203 16 H -0.205 1.205 17 H -0.189 1.189 18 N -0.168 5.168 19 N -0.195 5.195 20 C -0.009 4.009 21 N -0.167 5.167 22 C -0.039 4.039 23 C -0.185 4.185 24 C -0.157 4.157 25 C -0.120 4.120 26 C -0.061 4.061 27 H 0.127 0.873 28 H 0.115 0.885 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.101 0.899 32 H 0.127 0.873 33 H 0.140 0.860 34 H 0.111 0.889 35 H 0.118 0.882 36 H 0.086 0.914 37 H 0.054 0.946 38 H 0.012 0.988 39 H 0.025 0.975 40 H 0.072 0.928 41 H 0.061 0.939 42 H 0.111 0.889 43 H 0.154 0.846 44 H 0.151 0.849 45 H 0.118 0.882 46 H 0.108 0.892 47 H 0.085 0.915 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 23.931 11.440 6.849 27.395 hybrid contribution -1.279 -0.146 0.166 1.298 sum 22.652 11.295 7.014 26.265 Atomic orbital electron populations 1.24156 0.95574 1.03009 0.97520 1.21864 0.95065 0.95930 1.02911 1.20764 0.99831 0.92606 1.02885 1.21097 1.02516 0.96076 0.77979 1.46473 1.18203 1.35372 1.14651 1.25104 0.98054 0.96191 0.87476 1.20162 0.85309 0.97749 1.03362 1.21543 0.93070 0.98715 0.99926 1.18943 0.91387 0.94653 0.95603 1.21603 0.92200 1.02645 1.41192 0.92851 1.25843 1.01972 0.96336 0.95148 1.70065 1.22233 1.19186 1.45462 0.85580 0.78778 0.79407 0.78109 1.20280 1.20542 1.18866 1.73953 1.03813 1.18749 1.20252 1.74470 1.15607 1.11242 1.18159 1.22597 0.91710 0.97887 0.88671 1.59358 1.08616 1.16405 1.32358 1.21122 0.88263 0.95099 0.99365 1.22147 0.98211 0.95678 1.02468 1.22381 0.99269 0.96476 0.97588 1.20636 0.95947 0.96341 0.99119 1.22211 0.99116 0.93930 0.90823 0.87309 0.88468 0.91892 0.91964 0.89911 0.87253 0.85968 0.88915 0.88214 0.91442 0.94604 0.98824 0.97491 0.92778 0.93891 0.88937 0.84553 0.84941 0.88198 0.89221 0.91514 0.93647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.23 12.46 67.78 0.84 -3.38 16 2 C -0.16 -3.48 5.64 -16.49 -0.09 -3.57 16 3 C -0.10 -1.91 10.12 71.24 0.72 -1.19 16 4 C 0.14 3.05 6.23 85.64 0.53 3.58 16 5 N -0.45 -12.76 2.79 -518.91 -1.45 -14.21 16 6 C 0.20 6.85 7.32 137.64 1.01 7.86 16 7 C -0.03 -0.89 5.58 29.85 0.17 -0.72 16 8 C -0.09 -3.86 5.13 30.60 0.16 -3.70 16 9 C 0.03 1.59 4.97 29.85 0.15 1.74 16 10 C -0.54 -30.23 9.11 25.60 0.23 -29.99 16 11 H 0.05 2.94 7.74 -2.91 -0.02 2.91 16 12 C 0.01 0.29 5.46 84.66 0.46 0.75 16 13 N -0.93 -55.48 13.29 21.45 0.28 -55.19 16 14 Si 0.96 44.11 29.54 68.60 2.03 46.14 16 15 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 16 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 17 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 18 N -0.33 -12.92 12.18 -49.54 -0.60 -13.52 16 19 N -0.35 -12.70 11.75 -58.00 -0.68 -13.38 16 20 C 0.35 10.04 6.68 260.11 1.74 11.78 16 21 N -0.44 -9.38 4.16 -710.45 -2.95 -12.33 16 22 C 0.09 1.54 5.59 85.39 0.48 2.02 16 23 C -0.17 -2.05 9.92 26.69 0.26 -1.79 16 24 C -0.14 -1.52 9.94 26.74 0.27 -1.25 16 25 C -0.08 -1.03 6.32 29.75 0.19 -0.84 16 26 C 0.07 1.32 5.18 86.27 0.45 1.76 16 27 H 0.11 2.65 7.83 -2.91 -0.02 2.63 16 28 H 0.10 2.86 6.49 -2.91 -0.02 2.84 16 29 H 0.06 1.29 7.55 -2.39 -0.02 1.27 16 30 H 0.06 1.10 7.78 -2.39 -0.02 1.08 16 31 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.11 2.15 6.94 -2.39 -0.02 2.13 16 33 H 0.12 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.09 3.22 8.14 -2.39 -0.02 3.20 16 35 H 0.10 2.89 7.18 -2.39 -0.02 2.87 16 36 H 0.07 2.63 4.76 -2.39 -0.01 2.62 16 37 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 38 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 39 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 40 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 41 H 0.04 0.90 8.10 -2.39 -0.02 0.88 16 42 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.14 1.13 8.06 -2.91 -0.02 1.10 16 44 H 0.13 0.89 8.06 -2.91 -0.02 0.87 16 45 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 46 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 47 H 0.07 1.53 8.04 -2.39 -0.02 1.51 16 48 H 0.05 1.01 8.08 -2.39 -0.02 0.99 16 Total: -1.00 -70.29 388.86 5.11 -65.18 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: 0.92 Total: 14.28 kcal Atomic # 6 Polarization: -24.53 SS G_CDS: 7.56 Total: -16.97 kcal Atomic # 7 Polarization: -103.23 SS G_CDS: -5.40 Total: -108.64 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -70.29 5.11 -65.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343487027.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.178 kcal (2) G-P(sol) polarization free energy of solvation -70.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds