Wall clock time and date at job start Tue Mar 31 2020 12:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46895 * 109.47318 * 11.69228 * 3 2 1 5 5 C 1.46897 * 111.00107 * 68.77662 * 4 3 2 6 6 C 1.53004 * 109.46957 * 71.59270 * 5 4 3 7 7 C 1.38580 * 111.00022 * 304.82502 * 4 3 2 8 8 N 1.31222 * 126.47423 * 106.80531 * 7 4 3 9 9 N 1.28535 * 109.85884 * 180.02562 * 8 7 4 10 10 C 1.30296 * 110.05167 * 359.72056 * 9 8 7 11 11 C 1.50700 * 126.34259 * 180.30526 * 10 9 8 12 12 C 1.52997 * 109.47617 * 275.71268 * 11 10 9 13 13 C 1.52999 * 109.47532 * 180.02562 * 12 11 10 14 14 C 1.50690 * 109.47290 * 179.97438 * 13 12 11 15 15 H 1.08007 * 120.00154 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99851 * 179.97438 * 14 13 12 17 17 N 1.31505 * 119.99864 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99681 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47396 * 60.00405 * 18 16 14 20 20 H 1.48501 * 109.46846 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47277 * 300.00187 * 18 16 14 22 22 N 1.36452 * 126.47364 * 286.84544 * 7 4 3 23 23 C 1.46505 * 127.13829 * 359.96652 * 22 7 4 24 24 C 1.50703 * 109.47150 * 275.54198 * 23 22 7 25 25 C 1.30997 * 119.99888 * 94.50587 * 24 23 22 26 26 C 1.50691 * 119.99709 * 274.50832 * 24 23 22 27 27 H 4.40886 * 5.52108 * 180.02562 * 4 1 2 28 28 H 1.09004 * 109.46946 * 251.69156 * 3 2 1 29 29 H 1.09001 * 109.46790 * 131.69243 * 3 2 1 30 30 H 1.09004 * 109.47213 * 191.58933 * 5 4 3 31 31 H 1.08996 * 109.47385 * 311.59497 * 5 4 3 32 32 H 1.09007 * 109.47204 * 64.34349 * 6 5 4 33 33 H 1.09003 * 109.47412 * 184.34069 * 6 5 4 34 34 H 1.08997 * 109.47159 * 304.34760 * 6 5 4 35 35 H 1.08994 * 109.47048 * 35.71711 * 11 10 9 36 36 H 1.09007 * 109.47036 * 155.71106 * 11 10 9 37 37 H 1.09002 * 109.46673 * 300.00174 * 12 11 10 38 38 H 1.08998 * 109.47184 * 59.99723 * 12 11 10 39 39 H 1.09008 * 109.46632 * 300.00230 * 13 12 11 40 40 H 1.08998 * 109.46920 * 59.99304 * 13 12 11 41 41 H 0.97002 * 119.99830 * 180.02562 * 17 16 14 42 42 H 1.08995 * 109.47333 * 155.53621 * 23 22 7 43 43 H 1.09000 * 109.46712 * 35.53947 * 23 22 7 44 44 H 1.08001 * 119.99689 * 179.97438 * 25 24 23 45 45 H 1.07999 * 120.00382 * 359.72801 * 25 24 23 46 46 H 1.09005 * 109.47086 * 265.38355 * 26 24 23 47 47 H 1.08999 * 109.47592 * 25.37713 * 26 24 23 48 48 H 1.09000 * 109.47186 * 145.38512 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1363 -1.3553 -0.2807 5 6 2.8440 -1.7445 -1.6666 6 6 3.7475 -0.9580 -2.6186 7 6 2.6057 -2.2705 0.6145 8 7 1.6793 -3.1641 0.3595 9 7 1.4260 -3.8453 1.4196 10 6 2.1738 -3.4341 2.4042 11 6 2.1820 -3.9812 3.8083 12 6 1.0703 -3.3153 4.6217 13 6 1.0791 -3.8703 6.0475 14 6 -0.0155 -3.2140 6.8487 15 1 -0.6539 -2.4752 6.3871 16 6 -0.2026 -3.5575 8.1709 17 7 0.5744 -4.4574 8.7328 18 14 -1.5599 -2.7445 9.1639 19 1 -2.8733 -3.0263 8.5308 20 1 -1.5513 -3.2831 10.5478 21 1 -1.3339 -1.2773 9.2029 22 7 2.9475 -2.4121 1.9280 23 6 3.9417 -1.6348 2.6720 24 6 5.3095 -2.2286 2.4536 25 6 6.0873 -1.7531 1.5128 26 6 5.7824 -3.3692 3.3173 27 1 -1.0498 -0.0003 -0.0003 28 1 3.0092 0.3237 0.9757 29 1 3.0090 0.6844 -0.7674 30 1 3.0271 -2.8118 -1.7907 31 1 1.8003 -1.5261 -1.8929 32 1 4.7874 -1.2345 -2.4440 33 1 3.4782 -1.1892 -3.6492 34 1 3.6207 0.1098 -2.4407 35 1 2.0162 -5.0580 3.7796 36 1 3.1461 -3.7744 4.2732 37 1 1.2364 -2.2384 4.6503 38 1 0.1064 -3.5221 4.1569 39 1 0.9134 -4.9474 6.0191 40 1 2.0431 -3.6632 6.5120 41 1 0.4425 -4.6993 9.6629 42 1 3.7007 -1.6588 3.7347 43 1 3.9332 -0.6030 2.3208 44 1 7.0677 -2.1783 1.3566 45 1 5.7467 -0.9385 0.8909 46 1 6.3650 -2.9766 4.1508 47 1 4.9210 -3.9153 3.7017 48 1 6.4034 -4.0408 2.7244 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001343591117.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:56 Heat of formation + Delta-G solvation = 146.871697 kcal Electronic energy + Delta-G solvation = -26869.654875 eV Core-core repulsion = 23349.115402 eV Total energy + Delta-G solvation = -3520.539472 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.85389 -38.52790 -36.96988 -34.85522 -33.40122 -33.12322 -32.49000 -31.03801 -29.54171 -28.02572 -27.35163 -26.88369 -26.08177 -23.71999 -22.94584 -21.10933 -20.68483 -20.06017 -18.97896 -18.48493 -17.04912 -16.64592 -16.38882 -16.24558 -15.41889 -15.13797 -14.70345 -14.51380 -14.30354 -14.21787 -13.95633 -13.72988 -13.29918 -13.14692 -12.52135 -12.48903 -12.35731 -12.14919 -11.99556 -11.88461 -11.69346 -11.42763 -11.33876 -11.29458 -10.86645 -10.83243 -10.73080 -10.57165 -10.48139 -10.27038 -9.97829 -9.75690 -9.65196 -9.40416 -9.36807 -9.13269 -8.35854 -8.28145 -6.01263 -4.03385 1.68268 1.87955 2.43324 2.65262 2.72823 3.10034 3.32960 3.37312 3.40271 3.65031 4.16757 4.36811 4.44942 4.48487 4.60170 4.71468 4.83438 4.96236 4.98765 5.05492 5.15195 5.22097 5.31898 5.34856 5.38402 5.45323 5.54437 5.56384 5.65330 5.68828 5.76328 5.82508 5.87049 5.91723 5.98409 6.04776 6.15489 6.32571 6.42820 6.57186 6.63762 6.67910 6.77790 7.04314 7.23641 7.44238 7.64187 7.77762 7.98015 8.40807 8.99800 9.02850 9.60673 11.10004 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.014878 B = 0.003356 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.580668 B = 8340.657434 C = 9308.574549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.239 4.239 3 C 0.163 3.837 4 N -0.443 5.443 5 C 0.064 3.936 6 C -0.148 4.148 7 C 0.342 3.658 8 N -0.313 5.313 9 N -0.290 5.290 10 C 0.206 3.794 11 C -0.038 4.038 12 C -0.102 4.102 13 C 0.024 3.976 14 C -0.521 4.521 15 H 0.054 0.946 16 C 0.058 3.942 17 N -0.895 5.895 18 Si 0.891 3.109 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.277 1.277 22 N -0.466 5.466 23 C 0.144 3.856 24 C -0.151 4.151 25 C -0.154 4.154 26 C -0.123 4.123 27 H 0.217 0.783 28 H 0.096 0.904 29 H 0.113 0.887 30 H 0.086 0.914 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.056 0.944 35 H 0.096 0.904 36 H 0.078 0.922 37 H 0.044 0.956 38 H 0.057 0.943 39 H 0.020 0.980 40 H 0.016 0.984 41 H 0.261 0.739 42 H 0.107 0.893 43 H 0.095 0.905 44 H 0.101 0.899 45 H 0.105 0.895 46 H 0.072 0.928 47 H 0.068 0.932 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.101 9.580 -19.299 24.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.241 4.241 3 C 0.037 3.963 4 N -0.166 5.166 5 C -0.062 4.062 6 C -0.205 4.205 7 C -0.014 4.014 8 N -0.157 5.157 9 N -0.129 5.129 10 C -0.061 4.061 11 C -0.077 4.077 12 C -0.140 4.140 13 C -0.013 4.013 14 C -0.559 4.559 15 H 0.072 0.928 16 C -0.143 4.143 17 N -0.534 5.534 18 Si 0.719 3.281 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.203 1.203 22 N -0.160 5.160 23 C 0.022 3.978 24 C -0.152 4.152 25 C -0.192 4.192 26 C -0.180 4.180 27 H 0.233 0.767 28 H 0.114 0.886 29 H 0.131 0.869 30 H 0.104 0.896 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.114 0.886 36 H 0.096 0.904 37 H 0.063 0.937 38 H 0.076 0.924 39 H 0.038 0.962 40 H 0.035 0.965 41 H 0.071 0.929 42 H 0.125 0.875 43 H 0.113 0.887 44 H 0.119 0.881 45 H 0.123 0.877 46 H 0.091 0.909 47 H 0.087 0.913 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 11.650 8.683 -19.852 24.601 hybrid contribution -0.740 1.255 1.256 1.924 sum 10.910 9.939 -18.596 23.741 Atomic orbital electron populations 1.25027 0.96054 0.97386 0.99387 1.23719 0.95387 1.03028 1.01962 1.19482 0.83455 0.89649 1.03759 1.59150 1.54523 0.99737 1.03159 1.22061 0.99308 1.01291 0.83589 1.21837 1.00285 0.99996 0.98414 1.22206 0.96066 0.99415 0.83754 1.74555 1.12187 1.08295 1.20689 1.74023 1.21036 1.22377 0.95471 1.25243 0.92195 0.89472 0.99220 1.20411 1.01743 1.01499 0.84066 1.21646 0.95920 0.98555 0.97917 1.19087 0.97158 0.96560 0.88509 1.21182 1.15983 1.23065 0.95688 0.92822 1.24998 0.96266 0.95171 0.97880 1.69942 1.38669 1.31868 1.12970 0.86674 0.82633 0.79664 0.79142 1.20190 1.21259 1.20305 1.46241 1.31817 1.28713 1.09210 1.20882 0.84693 0.94274 0.97991 1.21804 0.94748 0.99252 0.99384 1.23834 0.98986 1.00352 0.96016 1.20926 1.01907 0.96035 0.99107 0.76656 0.88578 0.86906 0.89560 0.92539 0.91717 0.91527 0.92476 0.88570 0.90372 0.93697 0.92394 0.96182 0.96539 0.92924 0.87512 0.88700 0.88106 0.87679 0.90892 0.91282 0.91728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.98 19.25 29.55 0.57 -1.41 16 2 C -0.24 -2.94 11.26 -37.12 -0.42 -3.36 16 3 C 0.16 1.56 5.72 -6.61 -0.04 1.52 16 4 N -0.44 -4.89 4.70 -177.84 -0.84 -5.72 16 5 C 0.06 0.66 5.06 -3.82 -0.02 0.64 16 6 C -0.15 -1.00 10.03 37.16 0.37 -0.63 16 7 C 0.34 5.04 5.79 -318.87 -1.85 3.19 16 8 N -0.31 -5.64 11.34 30.31 0.34 -5.30 16 9 N -0.29 -5.66 12.18 32.99 0.40 -5.25 16 10 C 0.21 3.54 7.32 -154.02 -1.13 2.42 16 11 C -0.04 -0.64 5.47 -27.88 -0.15 -0.79 16 12 C -0.10 -2.09 5.13 -26.73 -0.14 -2.23 16 13 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16 14 C -0.52 -14.67 9.11 -34.44 -0.31 -14.98 16 15 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 16 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 17 N -0.90 -26.59 13.29 55.43 0.74 -25.86 16 18 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 N -0.47 -6.73 2.79 -115.36 -0.32 -7.05 16 23 C 0.14 1.61 6.04 -5.19 -0.03 1.58 16 24 C -0.15 -1.52 5.63 -101.07 -0.57 -2.09 16 25 C -0.15 -1.32 13.90 29.02 0.40 -0.92 16 26 C -0.12 -1.23 10.02 36.00 0.36 -0.87 16 27 H 0.22 2.11 7.80 -54.10 -0.42 1.69 16 28 H 0.10 0.84 6.20 -51.93 -0.32 0.52 16 29 H 0.11 0.76 6.34 -51.93 -0.33 0.43 16 30 H 0.09 1.01 7.81 -51.93 -0.41 0.60 16 31 H 0.06 0.65 7.09 -51.93 -0.37 0.28 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.33 6.46 -51.93 -0.34 0.00 16 35 H 0.10 1.65 8.14 -51.93 -0.42 1.22 16 36 H 0.08 1.18 5.53 -51.92 -0.29 0.89 16 37 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 39 H 0.02 0.53 8.14 -51.92 -0.42 0.11 16 40 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 42 H 0.11 1.22 7.48 -51.93 -0.39 0.83 16 43 H 0.09 0.88 5.99 -51.93 -0.31 0.57 16 44 H 0.10 0.76 8.05 -52.49 -0.42 0.34 16 45 H 0.10 0.83 8.00 -52.49 -0.42 0.41 16 46 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 47 H 0.07 0.78 6.10 -51.93 -0.32 0.47 16 48 H 0.06 0.60 8.10 -51.93 -0.42 0.18 16 LS Contribution 397.46 15.07 5.99 5.99 Total: -1.00 -33.68 397.46 -9.56 -43.25 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -7.67 Total: -0.79 kcal Atomic # 6 Polarization: -12.72 SS G_CDS: -3.18 Total: -15.90 kcal Atomic # 7 Polarization: -49.51 SS G_CDS: 0.32 Total: -49.18 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.68 -9.56 -43.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343591117.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.119 kcal (2) G-P(sol) polarization free energy of solvation -33.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 156.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 146.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds