Wall clock time and date at job start Tue Mar 31 2020 12:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46895 * 109.47318 * 11.69228 * 3 2 1 5 5 C 1.46897 * 111.00107 * 68.77662 * 4 3 2 6 6 C 1.53004 * 109.46957 * 71.59270 * 5 4 3 7 7 C 1.38580 * 111.00022 * 304.82502 * 4 3 2 8 8 N 1.31222 * 126.47423 * 106.80531 * 7 4 3 9 9 N 1.28535 * 109.85884 * 180.02562 * 8 7 4 10 10 C 1.30296 * 110.05167 * 359.72056 * 9 8 7 11 11 C 1.50700 * 126.34259 * 180.30526 * 10 9 8 12 12 C 1.52997 * 109.47617 * 275.71268 * 11 10 9 13 13 C 1.52999 * 109.47532 * 180.02562 * 12 11 10 14 14 C 1.50690 * 109.47290 * 179.97438 * 13 12 11 15 15 H 1.08007 * 120.00154 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99851 * 179.97438 * 14 13 12 17 17 N 1.31505 * 119.99864 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99681 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47396 * 60.00405 * 18 16 14 20 20 H 1.48501 * 109.46846 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47277 * 300.00187 * 18 16 14 22 22 N 1.36452 * 126.47364 * 286.84544 * 7 4 3 23 23 C 1.46505 * 127.13829 * 359.96652 * 22 7 4 24 24 C 1.50703 * 109.47150 * 275.54198 * 23 22 7 25 25 C 1.30997 * 119.99888 * 94.50587 * 24 23 22 26 26 C 1.50691 * 119.99709 * 274.50832 * 24 23 22 27 27 H 4.40886 * 5.52108 * 180.02562 * 4 1 2 28 28 H 1.09004 * 109.46946 * 251.69156 * 3 2 1 29 29 H 1.09001 * 109.46790 * 131.69243 * 3 2 1 30 30 H 1.09004 * 109.47213 * 191.58933 * 5 4 3 31 31 H 1.08996 * 109.47385 * 311.59497 * 5 4 3 32 32 H 1.09007 * 109.47204 * 64.34349 * 6 5 4 33 33 H 1.09003 * 109.47412 * 184.34069 * 6 5 4 34 34 H 1.08997 * 109.47159 * 304.34760 * 6 5 4 35 35 H 1.08994 * 109.47048 * 35.71711 * 11 10 9 36 36 H 1.09007 * 109.47036 * 155.71106 * 11 10 9 37 37 H 1.09002 * 109.46673 * 300.00174 * 12 11 10 38 38 H 1.08998 * 109.47184 * 59.99723 * 12 11 10 39 39 H 1.09008 * 109.46632 * 300.00230 * 13 12 11 40 40 H 1.08998 * 109.46920 * 59.99304 * 13 12 11 41 41 H 0.97002 * 119.99830 * 180.02562 * 17 16 14 42 42 H 1.08995 * 109.47333 * 155.53621 * 23 22 7 43 43 H 1.09000 * 109.46712 * 35.53947 * 23 22 7 44 44 H 1.08001 * 119.99689 * 179.97438 * 25 24 23 45 45 H 1.07999 * 120.00382 * 359.72801 * 25 24 23 46 46 H 1.09005 * 109.47086 * 265.38355 * 26 24 23 47 47 H 1.08999 * 109.47592 * 25.37713 * 26 24 23 48 48 H 1.09000 * 109.47186 * 145.38512 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1363 -1.3553 -0.2807 5 6 2.8440 -1.7445 -1.6666 6 6 3.7475 -0.9580 -2.6186 7 6 2.6057 -2.2705 0.6145 8 7 1.6793 -3.1641 0.3595 9 7 1.4260 -3.8453 1.4196 10 6 2.1738 -3.4341 2.4042 11 6 2.1820 -3.9812 3.8083 12 6 1.0703 -3.3153 4.6217 13 6 1.0791 -3.8703 6.0475 14 6 -0.0155 -3.2140 6.8487 15 1 -0.6539 -2.4752 6.3871 16 6 -0.2026 -3.5575 8.1709 17 7 0.5744 -4.4574 8.7328 18 14 -1.5599 -2.7445 9.1639 19 1 -2.8733 -3.0263 8.5308 20 1 -1.5513 -3.2831 10.5478 21 1 -1.3339 -1.2773 9.2029 22 7 2.9475 -2.4121 1.9280 23 6 3.9417 -1.6348 2.6720 24 6 5.3095 -2.2286 2.4536 25 6 6.0873 -1.7531 1.5128 26 6 5.7824 -3.3692 3.3173 27 1 -1.0498 -0.0003 -0.0003 28 1 3.0092 0.3237 0.9757 29 1 3.0090 0.6844 -0.7674 30 1 3.0271 -2.8118 -1.7907 31 1 1.8003 -1.5261 -1.8929 32 1 4.7874 -1.2345 -2.4440 33 1 3.4782 -1.1892 -3.6492 34 1 3.6207 0.1098 -2.4407 35 1 2.0162 -5.0580 3.7796 36 1 3.1461 -3.7744 4.2732 37 1 1.2364 -2.2384 4.6503 38 1 0.1064 -3.5221 4.1569 39 1 0.9134 -4.9474 6.0191 40 1 2.0431 -3.6632 6.5120 41 1 0.4425 -4.6993 9.6629 42 1 3.7007 -1.6588 3.7347 43 1 3.9332 -0.6030 2.3208 44 1 7.0677 -2.1783 1.3566 45 1 5.7467 -0.9385 0.8909 46 1 6.3650 -2.9766 4.1508 47 1 4.9210 -3.9153 3.7017 48 1 6.4034 -4.0408 2.7244 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001343591117.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:55 Heat of formation + Delta-G solvation = 129.763299 kcal Electronic energy + Delta-G solvation = -26870.396750 eV Core-core repulsion = 23349.115402 eV Total energy + Delta-G solvation = -3521.281348 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.07357 -39.44222 -37.88720 -36.57955 -34.63570 -34.24312 -33.98451 -32.11151 -30.82394 -29.22821 -28.34495 -27.89591 -27.17234 -25.52819 -23.86620 -22.49223 -22.04325 -21.41482 -19.85566 -19.36670 -18.50584 -17.92898 -17.64722 -17.42131 -16.57883 -16.27556 -16.09942 -15.69236 -15.54524 -15.26821 -15.03514 -14.82399 -14.31080 -14.08183 -13.91232 -13.87009 -13.38426 -13.19818 -13.04788 -12.92898 -12.84888 -12.71333 -12.67264 -12.53250 -12.41454 -12.28028 -12.08240 -11.79715 -11.58745 -11.50794 -11.45401 -11.28028 -11.20313 -11.02907 -10.63530 -10.54248 -10.13357 -9.50018 -8.19755 -6.29970 0.67971 0.85918 1.39582 1.42061 1.48306 1.49979 1.68859 1.75431 1.86417 2.41017 2.70112 3.13587 3.34368 3.37023 3.52168 3.69766 3.81085 3.85872 4.02947 4.18964 4.25004 4.30867 4.33065 4.43698 4.47339 4.54616 4.58833 4.61822 4.67260 4.80967 4.85130 4.89611 4.96877 4.99819 5.02427 5.05827 5.10523 5.14211 5.18501 5.34609 5.48042 5.50960 5.59441 5.63353 5.72974 5.83550 5.85228 6.14277 6.25568 6.52868 6.85154 7.38608 7.72544 8.91530 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.014878 B = 0.003356 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.580668 B = 8340.657434 C = 9308.574549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.251 4.251 3 C 0.158 3.842 4 N -0.430 5.430 5 C 0.064 3.936 6 C -0.137 4.137 7 C 0.358 3.642 8 N -0.350 5.350 9 N -0.328 5.328 10 C 0.197 3.803 11 C -0.024 4.024 12 C -0.083 4.083 13 C 0.030 3.970 14 C -0.545 4.545 15 H 0.053 0.947 16 C 0.005 3.995 17 N -0.928 5.928 18 Si 0.959 3.041 19 H -0.272 1.272 20 H -0.281 1.281 21 H -0.266 1.266 22 N -0.460 5.460 23 C 0.137 3.863 24 C -0.172 4.172 25 C -0.133 4.133 26 C -0.123 4.123 27 H 0.229 0.771 28 H 0.110 0.890 29 H 0.150 0.850 30 H 0.066 0.934 31 H 0.040 0.960 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.091 0.909 36 H 0.098 0.902 37 H 0.049 0.951 38 H 0.039 0.961 39 H -0.004 1.004 40 H 0.006 0.994 41 H 0.264 0.736 42 H 0.102 0.898 43 H 0.119 0.881 44 H 0.114 0.886 45 H 0.118 0.882 46 H 0.081 0.919 47 H 0.049 0.951 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.531 11.970 -20.217 27.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.252 4.252 3 C 0.033 3.967 4 N -0.153 5.153 5 C -0.062 4.062 6 C -0.195 4.195 7 C 0.001 3.999 8 N -0.194 5.194 9 N -0.167 5.167 10 C -0.072 4.072 11 C -0.064 4.064 12 C -0.122 4.122 13 C -0.007 4.007 14 C -0.583 4.583 15 H 0.071 0.929 16 C -0.193 4.193 17 N -0.568 5.568 18 Si 0.783 3.217 19 H -0.197 1.197 20 H -0.206 1.206 21 H -0.191 1.191 22 N -0.153 5.153 23 C 0.016 3.984 24 C -0.173 4.173 25 C -0.171 4.171 26 C -0.179 4.179 27 H 0.246 0.754 28 H 0.128 0.872 29 H 0.168 0.832 30 H 0.084 0.916 31 H 0.059 0.941 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.109 0.891 36 H 0.116 0.884 37 H 0.068 0.932 38 H 0.058 0.942 39 H 0.014 0.986 40 H 0.024 0.976 41 H 0.073 0.927 42 H 0.120 0.880 43 H 0.137 0.863 44 H 0.132 0.868 45 H 0.136 0.864 46 H 0.100 0.900 47 H 0.068 0.932 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 13.094 11.090 -20.780 26.949 hybrid contribution -1.118 0.544 1.463 1.920 sum 11.976 11.634 -19.317 25.533 Atomic orbital electron populations 1.25651 0.97136 0.97688 0.99993 1.24403 0.96499 1.02778 1.01569 1.19836 0.82004 0.88966 1.05910 1.59376 1.53433 0.99692 1.02780 1.22113 0.99418 1.00893 0.83798 1.21793 0.99615 1.00273 0.97813 1.22593 0.94469 0.98704 0.84150 1.74465 1.14261 1.09926 1.20757 1.73920 1.22435 1.23844 0.96498 1.24977 0.92962 0.90594 0.98692 1.20165 1.01301 1.00816 0.84105 1.21329 0.96466 0.98784 0.95577 1.18952 0.95822 0.95038 0.90886 1.21608 1.16818 1.23380 0.96536 0.92880 1.25874 0.98682 0.95697 0.99066 1.70058 1.40284 1.33061 1.13443 0.85599 0.79437 0.79077 0.77545 1.19692 1.20569 1.19106 1.46390 1.31754 1.27987 1.09205 1.21182 0.84561 0.95079 0.97537 1.21729 0.94514 1.00245 1.00833 1.24061 0.99037 0.99585 0.94423 1.20911 1.01275 0.96128 0.99604 0.75446 0.87246 0.83220 0.91584 0.94109 0.91012 0.90477 0.90821 0.89095 0.88358 0.93206 0.94171 0.98557 0.97571 0.92676 0.88004 0.86346 0.86785 0.86414 0.90009 0.93226 0.91290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.53 19.25 74.32 1.43 -3.10 16 2 C -0.25 -5.82 11.26 31.13 0.35 -5.47 16 3 C 0.16 2.56 5.72 84.50 0.48 3.04 16 4 N -0.43 -8.55 4.70 -716.57 -3.37 -11.92 16 5 C 0.06 1.22 5.06 86.30 0.44 1.66 16 6 C -0.14 -1.43 10.03 71.98 0.72 -0.70 16 7 C 0.36 10.25 5.79 260.11 1.51 11.76 16 8 N -0.35 -12.81 11.34 -58.00 -0.66 -13.47 16 9 N -0.33 -13.16 12.18 -49.54 -0.60 -13.76 16 10 C 0.20 6.86 7.32 137.64 1.01 7.87 16 11 C -0.02 -0.85 5.47 29.85 0.16 -0.69 16 12 C -0.08 -3.49 5.13 30.59 0.16 -3.33 16 13 C 0.03 1.56 4.97 29.84 0.15 1.71 16 14 C -0.55 -31.19 9.11 25.60 0.23 -30.96 16 15 H 0.05 2.97 7.74 -2.91 -0.02 2.94 16 16 C 0.01 0.29 5.46 84.66 0.46 0.75 16 17 N -0.93 -55.85 13.29 21.45 0.28 -55.56 16 18 Si 0.96 44.39 29.54 68.60 2.03 46.42 16 19 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 20 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 21 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 22 N -0.46 -12.93 2.79 -518.90 -1.45 -14.38 16 23 C 0.14 2.83 6.04 85.63 0.52 3.35 16 24 C -0.17 -3.10 5.63 -16.49 -0.09 -3.20 16 25 C -0.13 -1.84 13.90 67.78 0.94 -0.90 16 26 C -0.12 -2.30 10.02 71.23 0.71 -1.59 16 27 H 0.23 4.48 7.80 -4.43 -0.03 4.44 16 28 H 0.11 1.51 6.20 -2.38 -0.01 1.50 16 29 H 0.15 1.34 6.34 -2.39 -0.02 1.33 16 30 H 0.07 1.52 7.81 -2.39 -0.02 1.50 16 31 H 0.04 0.91 7.09 -2.39 -0.02 0.89 16 32 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 33 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.07 0.54 6.46 -2.39 -0.02 0.52 16 35 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 36 H 0.10 3.01 5.53 -2.38 -0.01 2.99 16 37 H 0.05 2.02 8.14 -2.39 -0.02 2.01 16 38 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.00 -0.22 8.14 -2.38 -0.02 -0.24 16 40 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 41 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 42 H 0.10 2.21 7.48 -2.39 -0.02 2.19 16 43 H 0.12 1.84 5.99 -2.39 -0.01 1.82 16 44 H 0.11 1.31 8.05 -2.91 -0.02 1.28 16 45 H 0.12 1.34 8.00 -2.91 -0.02 1.31 16 46 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 47 H 0.05 1.11 6.10 -2.39 -0.01 1.10 16 48 H 0.07 1.20 8.10 -2.39 -0.02 1.18 16 Total: -1.00 -74.45 397.46 6.34 -68.11 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: 0.93 Total: 14.36 kcal Atomic # 6 Polarization: -28.98 SS G_CDS: 9.18 Total: -19.80 kcal Atomic # 7 Polarization: -103.29 SS G_CDS: -5.79 Total: -109.08 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -74.45 6.34 -68.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343591117.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 197.869 kcal (2) G-P(sol) polarization free energy of solvation -74.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds