Wall clock time and date at job start Tue Mar 31 2020 11:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50700 * 120.00044 * 2 1 4 4 C 1.50705 * 119.99963 * 180.02562 * 2 1 3 5 5 N 1.46499 * 109.47192 * 94.99865 * 4 2 1 6 6 C 1.36739 * 127.13550 * 95.18499 * 5 4 2 7 7 C 1.50691 * 126.34972 * 359.76093 * 6 5 4 8 8 C 1.53005 * 109.47435 * 89.99557 * 7 6 5 9 9 C 1.50697 * 109.47377 * 179.97438 * 8 7 6 10 10 H 1.08002 * 120.00030 * 0.02562 * 9 8 7 11 11 C 1.37878 * 120.00021 * 179.97438 * 9 8 7 12 12 N 1.31514 * 119.99825 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99831 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47020 * 90.00403 * 13 11 9 15 15 H 1.48504 * 109.46690 * 210.00199 * 13 11 9 16 16 H 1.48500 * 109.47223 * 330.00223 * 13 11 9 17 17 N 1.30299 * 107.30416 * 180.02562 * 6 5 4 18 18 N 1.28530 * 110.05078 * 0.02562 * 17 6 5 19 19 C 1.31210 * 109.86347 * 359.97438 * 18 17 6 20 20 N 1.38581 * 126.47546 * 179.97438 * 19 18 17 21 21 C 1.46832 * 110.99891 * 68.46139 * 20 19 18 22 22 C 1.53297 * 109.39748 * 170.25053 * 21 20 19 23 23 C 1.51430 * 108.24785 * 53.79237 * 22 21 20 24 24 C 1.31004 * 121.11391 * 130.94841 * 23 22 21 25 25 C 1.51436 * 117.77664 * 310.97285 * 23 22 21 26 26 C 1.46826 * 110.99949 * 303.77563 * 20 19 18 27 27 H 1.08002 * 120.00338 * 0.02562 * 1 2 3 28 28 H 1.08000 * 119.99912 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47363 * 270.00327 * 3 2 1 30 30 H 1.09003 * 109.46881 * 30.00037 * 3 2 1 31 31 H 1.09000 * 109.47042 * 150.00158 * 3 2 1 32 32 H 1.08994 * 109.47053 * 334.99677 * 4 2 1 33 33 H 1.09002 * 109.46644 * 214.99610 * 4 2 1 34 34 H 1.09003 * 109.47350 * 209.99924 * 7 6 5 35 35 H 1.09003 * 109.47498 * 329.99718 * 7 6 5 36 36 H 1.08991 * 109.46867 * 300.00324 * 8 7 6 37 37 H 1.09007 * 109.46600 * 60.00150 * 8 7 6 38 38 H 0.96997 * 119.99573 * 179.97438 * 12 11 9 39 39 H 1.08998 * 109.48479 * 290.22394 * 21 20 19 40 40 H 1.09000 * 109.48344 * 50.26976 * 21 20 19 41 41 H 1.09007 * 109.71103 * 294.10025 * 22 21 20 42 42 H 1.09001 * 109.70901 * 173.48336 * 22 21 20 43 43 H 1.07995 * 120.00025 * 180.02562 * 24 23 22 44 44 H 1.07999 * 119.99652 * 0.02562 * 24 23 22 45 45 H 1.08998 * 109.71111 * 289.34072 * 25 23 22 46 46 H 1.09002 * 109.71188 * 168.71290 * 25 23 22 47 47 H 1.08997 * 109.48462 * 309.73141 * 26 20 19 48 48 H 1.09008 * 109.48103 * 69.76328 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 7 2.4119 -1.6673 -1.3767 6 6 3.5888 -1.4125 -2.0246 7 6 4.7846 -0.6941 -1.4549 8 6 5.7201 -1.7072 -0.7918 9 6 6.9163 -0.9888 -0.2226 10 1 7.0008 0.0832 -0.3233 11 6 7.9025 -1.7000 0.4276 12 7 7.7994 -3.0053 0.5505 13 14 9.3849 -0.8094 1.1337 14 1 9.0991 -0.4056 2.5339 15 1 10.5630 -1.7133 1.1099 16 1 9.6712 0.3986 0.3188 17 7 3.4824 -1.9011 -3.2278 18 7 2.3271 -2.4425 -3.3831 19 6 1.6289 -2.3279 -2.2781 20 7 0.3396 -2.7898 -2.0666 21 6 0.3031 -4.2576 -2.0466 22 6 -1.0773 -4.7261 -1.5724 23 6 -2.1265 -4.0679 -2.4435 24 6 -3.0877 -4.7688 -2.9922 25 6 -2.0273 -2.5723 -2.6597 26 6 -0.5864 -2.2405 -3.0648 27 1 -0.5401 0.9353 -0.0004 28 1 -0.5400 -0.9353 -0.0004 29 1 2.2451 1.6198 -1.0276 30 1 1.4744 2.0647 0.5139 31 1 3.0159 1.1747 0.5138 32 1 1.4386 -2.0856 0.4334 33 1 2.9742 -1.1991 0.5889 34 1 5.3153 -0.1798 -2.2561 35 1 4.4527 0.0330 -0.7138 36 1 5.1895 -2.2214 0.0093 37 1 6.0522 -2.4343 -1.5330 38 1 8.4934 -3.5056 1.0076 39 1 0.4919 -4.6397 -3.0498 40 1 1.0677 -4.6310 -1.3653 41 1 -1.2273 -4.4350 -0.5327 42 1 -1.1495 -5.8098 -1.6652 43 1 -3.8264 -4.2808 -3.6107 44 1 -3.1413 -5.8346 -2.8260 45 1 -2.2791 -2.0499 -1.7368 46 1 -2.7111 -2.2693 -3.4526 47 1 -0.4637 -1.1588 -3.1182 48 1 -0.3725 -2.6793 -4.0395 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001343641046.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:31 Heat of formation + Delta-G solvation = 106.389810 kcal Electronic energy + Delta-G solvation = -27128.401691 eV Core-core repulsion = 23606.106792 eV Total energy + Delta-G solvation = -3522.294899 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.60787 -39.10893 -36.75788 -35.00715 -34.03776 -33.08650 -31.68833 -31.41268 -29.23481 -27.63254 -27.30924 -26.65178 -25.17069 -23.71555 -22.69371 -21.86656 -20.76407 -20.14825 -18.73041 -18.40245 -17.14087 -16.48273 -16.10898 -15.93466 -15.08109 -14.95740 -14.67003 -14.55520 -14.47370 -14.06621 -13.84563 -13.67130 -13.27624 -13.04489 -12.99904 -12.69476 -12.36116 -12.16439 -11.93781 -11.90090 -11.56481 -11.49893 -11.33000 -11.15889 -11.06194 -10.97531 -10.70335 -10.66215 -10.37140 -10.00574 -9.86055 -9.69286 -9.35212 -9.28954 -9.24011 -8.73681 -8.42458 -8.38519 -6.06708 -4.10892 1.83974 2.00073 2.13016 2.72861 3.27545 3.28278 3.35512 3.38743 3.80471 4.40072 4.44342 4.49099 4.65521 4.67836 4.91269 4.93023 5.04858 5.10889 5.16159 5.25508 5.27753 5.29472 5.41962 5.47023 5.52007 5.55859 5.58214 5.61423 5.62260 5.66939 5.74668 5.79242 5.83918 5.93200 5.97262 6.32045 6.35078 6.35684 6.43184 6.46875 6.60491 6.67104 6.68824 6.73737 6.97478 7.49262 7.53801 7.67591 7.90600 8.28061 8.95160 9.18079 9.53844 11.04390 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.018648 B = 0.003295 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.124486 B = 8495.543409 C = 9115.356147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.145 4.145 3 C -0.121 4.121 4 C 0.147 3.853 5 N -0.457 5.457 6 C 0.219 3.781 7 C -0.033 4.033 8 C 0.032 3.968 9 C -0.524 4.524 10 H 0.059 0.941 11 C 0.060 3.940 12 N -0.892 5.892 13 Si 0.894 3.106 14 H -0.280 1.280 15 H -0.286 1.286 16 H -0.272 1.272 17 N -0.299 5.299 18 N -0.314 5.314 19 C 0.323 3.677 20 N -0.458 5.458 21 C 0.069 3.931 22 C -0.080 4.080 23 C -0.119 4.119 24 C -0.198 4.198 25 C -0.080 4.080 26 C 0.075 3.925 27 H 0.098 0.902 28 H 0.106 0.894 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.098 0.902 33 H 0.107 0.893 34 H 0.088 0.912 35 H 0.071 0.929 36 H 0.014 0.986 37 H 0.025 0.975 38 H 0.262 0.738 39 H 0.053 0.947 40 H 0.079 0.921 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.097 0.903 44 H 0.097 0.903 45 H 0.082 0.918 46 H 0.077 0.923 47 H 0.077 0.923 48 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.249 1.920 -1.030 22.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.146 4.146 3 C -0.178 4.178 4 C 0.025 3.975 5 N -0.149 5.149 6 C -0.048 4.048 7 C -0.073 4.073 8 C -0.006 4.006 9 C -0.562 4.562 10 H 0.077 0.923 11 C -0.142 4.142 12 N -0.530 5.530 13 Si 0.721 3.279 14 H -0.207 1.207 15 H -0.212 1.212 16 H -0.197 1.197 17 N -0.139 5.139 18 N -0.158 5.158 19 C -0.033 4.033 20 N -0.184 5.184 21 C -0.059 4.059 22 C -0.118 4.118 23 C -0.119 4.119 24 C -0.234 4.234 25 C -0.118 4.118 26 C -0.052 4.052 27 H 0.117 0.883 28 H 0.124 0.876 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.116 0.884 33 H 0.126 0.874 34 H 0.107 0.893 35 H 0.089 0.911 36 H 0.032 0.968 37 H 0.043 0.957 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.097 0.903 41 H 0.100 0.900 42 H 0.096 0.904 43 H 0.115 0.885 44 H 0.116 0.884 45 H 0.100 0.900 46 H 0.095 0.905 47 H 0.095 0.905 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -21.939 1.544 -1.922 22.077 hybrid contribution 0.665 0.349 1.075 1.311 sum -21.274 1.893 -0.848 21.375 Atomic orbital electron populations 1.23839 0.95057 1.02209 0.98893 1.21863 0.95634 0.95327 1.01793 1.20905 1.00604 0.93925 1.02344 1.20845 1.01688 0.95097 0.79901 1.46353 1.12871 1.42868 1.12849 1.25615 0.88672 1.00629 0.89871 1.20484 0.88795 0.98145 0.99891 1.19067 0.92760 0.93506 0.95267 1.21129 1.04973 0.93914 1.36190 0.92291 1.25008 0.98301 0.94807 0.96108 1.69971 1.34424 1.06020 1.42623 0.86567 0.82323 0.79613 0.79357 1.20657 1.21174 1.19722 1.74058 1.11116 1.13846 1.14888 1.74492 1.00794 1.19820 1.20671 1.22059 0.92049 1.01648 0.87563 1.58320 1.00435 1.09510 1.50150 1.22160 0.97589 0.84533 1.01580 1.20905 0.92034 0.99450 0.99388 1.21980 0.96245 0.95715 0.97944 1.23597 0.98536 0.99900 1.01386 1.20912 0.95617 0.92962 1.02293 1.22064 0.90413 0.99941 0.92816 0.88344 0.87624 0.91566 0.91706 0.90917 0.88357 0.87448 0.89336 0.91069 0.96809 0.95653 0.92861 0.92874 0.90289 0.89964 0.90364 0.88461 0.88429 0.90009 0.90465 0.90478 0.92855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.62 13.89 29.02 0.40 -1.21 16 2 C -0.15 -1.70 5.64 -101.06 -0.57 -2.27 16 3 C -0.12 -1.36 9.75 36.01 0.35 -1.01 16 4 C 0.15 2.02 6.11 -5.19 -0.03 1.98 16 5 N -0.46 -7.70 2.79 -115.37 -0.32 -8.03 16 6 C 0.22 4.36 7.32 -154.02 -1.13 3.23 16 7 C -0.03 -0.67 5.31 -27.88 -0.15 -0.82 16 8 C 0.03 0.81 4.96 -27.88 -0.14 0.67 16 9 C -0.52 -14.16 9.11 -34.44 -0.31 -14.48 16 10 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 11 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 12 N -0.89 -26.32 13.29 55.43 0.74 -25.58 16 13 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 14 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 15 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 16 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 17 N -0.30 -6.54 12.18 32.99 0.40 -6.14 16 18 N -0.31 -6.28 12.13 30.31 0.37 -5.92 16 19 C 0.32 5.41 6.40 -318.88 -2.04 3.37 16 20 N -0.46 -5.89 4.59 -174.26 -0.80 -6.69 16 21 C 0.07 0.82 5.44 -3.71 -0.02 0.80 16 22 C -0.08 -0.72 6.21 -27.37 -0.17 -0.89 16 23 C -0.12 -1.04 5.42 -100.35 -0.54 -1.58 16 24 C -0.20 -1.54 14.01 29.01 0.41 -1.13 16 25 C -0.08 -0.68 6.21 -27.36 -0.17 -0.85 16 26 C 0.07 0.85 5.37 -3.71 -0.02 0.83 16 27 H 0.10 0.85 8.04 -52.49 -0.42 0.43 16 28 H 0.11 1.03 7.99 -52.49 -0.42 0.61 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.61 8.06 -51.93 -0.42 0.19 16 31 H 0.07 0.85 7.44 -51.93 -0.39 0.47 16 32 H 0.10 1.21 7.99 -51.93 -0.41 0.80 16 33 H 0.11 1.56 7.59 -51.93 -0.39 1.17 16 34 H 0.09 1.79 8.14 -51.93 -0.42 1.37 16 35 H 0.07 1.28 6.83 -51.93 -0.35 0.93 16 36 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.03 0.71 8.14 -51.92 -0.42 0.29 16 38 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 39 H 0.05 0.70 8.10 -51.93 -0.42 0.28 16 40 H 0.08 1.02 8.06 -51.93 -0.42 0.60 16 41 H 0.08 0.71 8.14 -51.92 -0.42 0.28 16 42 H 0.08 0.62 7.93 -51.93 -0.41 0.20 16 43 H 0.10 0.67 7.95 -52.49 -0.42 0.25 16 44 H 0.10 0.69 7.95 -52.49 -0.42 0.27 16 45 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 46 H 0.08 0.56 7.93 -51.93 -0.41 0.15 16 47 H 0.08 0.91 8.06 -51.93 -0.42 0.50 16 48 H 0.05 0.68 8.10 -51.92 -0.42 0.26 16 LS Contribution 395.32 15.07 5.96 5.96 Total: -1.00 -31.68 395.32 -11.13 -42.81 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -8.22 Total: -0.65 kcal Atomic # 6 Polarization: -7.57 SS G_CDS: -4.23 Total: -11.80 kcal Atomic # 7 Polarization: -52.74 SS G_CDS: 0.38 Total: -52.35 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.68 -11.13 -42.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343641046.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.202 kcal (2) G-P(sol) polarization free energy of solvation -31.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds