Wall clock time and date at job start Tue Mar 31 2020 11:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50700 * 120.00044 * 2 1 4 4 C 1.50705 * 119.99963 * 180.02562 * 2 1 3 5 5 N 1.46499 * 109.47192 * 94.99865 * 4 2 1 6 6 C 1.36739 * 127.13550 * 95.18499 * 5 4 2 7 7 C 1.50691 * 126.34972 * 359.76093 * 6 5 4 8 8 C 1.53005 * 109.47435 * 89.99557 * 7 6 5 9 9 C 1.50697 * 109.47377 * 179.97438 * 8 7 6 10 10 H 1.08002 * 120.00030 * 0.02562 * 9 8 7 11 11 C 1.37878 * 120.00021 * 179.97438 * 9 8 7 12 12 N 1.31514 * 119.99825 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99831 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47020 * 90.00403 * 13 11 9 15 15 H 1.48504 * 109.46690 * 210.00199 * 13 11 9 16 16 H 1.48500 * 109.47223 * 330.00223 * 13 11 9 17 17 N 1.30299 * 107.30416 * 180.02562 * 6 5 4 18 18 N 1.28530 * 110.05078 * 0.02562 * 17 6 5 19 19 C 1.31210 * 109.86347 * 359.97438 * 18 17 6 20 20 N 1.38581 * 126.47546 * 179.97438 * 19 18 17 21 21 C 1.46832 * 110.99891 * 68.46139 * 20 19 18 22 22 C 1.53297 * 109.39748 * 170.25053 * 21 20 19 23 23 C 1.51430 * 108.24785 * 53.79237 * 22 21 20 24 24 C 1.31004 * 121.11391 * 130.94841 * 23 22 21 25 25 C 1.51436 * 117.77664 * 310.97285 * 23 22 21 26 26 C 1.46826 * 110.99949 * 303.77563 * 20 19 18 27 27 H 1.08002 * 120.00338 * 0.02562 * 1 2 3 28 28 H 1.08000 * 119.99912 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47363 * 270.00327 * 3 2 1 30 30 H 1.09003 * 109.46881 * 30.00037 * 3 2 1 31 31 H 1.09000 * 109.47042 * 150.00158 * 3 2 1 32 32 H 1.08994 * 109.47053 * 334.99677 * 4 2 1 33 33 H 1.09002 * 109.46644 * 214.99610 * 4 2 1 34 34 H 1.09003 * 109.47350 * 209.99924 * 7 6 5 35 35 H 1.09003 * 109.47498 * 329.99718 * 7 6 5 36 36 H 1.08991 * 109.46867 * 300.00324 * 8 7 6 37 37 H 1.09007 * 109.46600 * 60.00150 * 8 7 6 38 38 H 0.96997 * 119.99573 * 179.97438 * 12 11 9 39 39 H 1.08998 * 109.48479 * 290.22394 * 21 20 19 40 40 H 1.09000 * 109.48344 * 50.26976 * 21 20 19 41 41 H 1.09007 * 109.71103 * 294.10025 * 22 21 20 42 42 H 1.09001 * 109.70901 * 173.48336 * 22 21 20 43 43 H 1.07995 * 120.00025 * 180.02562 * 24 23 22 44 44 H 1.07999 * 119.99652 * 0.02562 * 24 23 22 45 45 H 1.08998 * 109.71111 * 289.34072 * 25 23 22 46 46 H 1.09002 * 109.71188 * 168.71290 * 25 23 22 47 47 H 1.08997 * 109.48462 * 309.73141 * 26 20 19 48 48 H 1.09008 * 109.48103 * 69.76328 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 7 2.4119 -1.6673 -1.3767 6 6 3.5888 -1.4125 -2.0246 7 6 4.7846 -0.6941 -1.4549 8 6 5.7201 -1.7072 -0.7918 9 6 6.9163 -0.9888 -0.2226 10 1 7.0008 0.0832 -0.3233 11 6 7.9025 -1.7000 0.4276 12 7 7.7994 -3.0053 0.5505 13 14 9.3849 -0.8094 1.1337 14 1 9.0991 -0.4056 2.5339 15 1 10.5630 -1.7133 1.1099 16 1 9.6712 0.3986 0.3188 17 7 3.4824 -1.9011 -3.2278 18 7 2.3271 -2.4425 -3.3831 19 6 1.6289 -2.3279 -2.2781 20 7 0.3396 -2.7898 -2.0666 21 6 0.3031 -4.2576 -2.0466 22 6 -1.0773 -4.7261 -1.5724 23 6 -2.1265 -4.0679 -2.4435 24 6 -3.0877 -4.7688 -2.9922 25 6 -2.0273 -2.5723 -2.6597 26 6 -0.5864 -2.2405 -3.0648 27 1 -0.5401 0.9353 -0.0004 28 1 -0.5400 -0.9353 -0.0004 29 1 2.2451 1.6198 -1.0276 30 1 1.4744 2.0647 0.5139 31 1 3.0159 1.1747 0.5138 32 1 1.4386 -2.0856 0.4334 33 1 2.9742 -1.1991 0.5889 34 1 5.3153 -0.1798 -2.2561 35 1 4.4527 0.0330 -0.7138 36 1 5.1895 -2.2214 0.0093 37 1 6.0522 -2.4343 -1.5330 38 1 8.4934 -3.5056 1.0076 39 1 0.4919 -4.6397 -3.0498 40 1 1.0677 -4.6310 -1.3653 41 1 -1.2273 -4.4350 -0.5327 42 1 -1.1495 -5.8098 -1.6652 43 1 -3.8264 -4.2808 -3.6107 44 1 -3.1413 -5.8346 -2.8260 45 1 -2.2791 -2.0499 -1.7368 46 1 -2.7111 -2.2693 -3.4526 47 1 -0.4637 -1.1588 -3.1182 48 1 -0.3725 -2.6793 -4.0395 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001343641046.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:30 Heat of formation + Delta-G solvation = 91.376510 kcal Electronic energy + Delta-G solvation = -27129.052716 eV Core-core repulsion = 23606.106792 eV Total energy + Delta-G solvation = -3522.945924 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.05286 -40.05027 -37.84590 -36.26484 -35.56517 -34.43990 -33.48153 -32.24684 -30.61689 -28.82772 -28.27012 -27.71851 -27.01917 -24.56128 -23.87163 -23.58334 -21.97381 -21.62874 -19.77059 -19.20152 -18.57985 -18.23864 -17.39815 -17.19428 -16.50722 -15.94798 -15.81283 -15.71202 -15.43429 -15.23397 -15.09756 -14.88783 -14.47987 -14.29147 -14.10518 -14.01139 -13.54605 -13.36512 -13.01170 -12.93667 -12.90109 -12.87183 -12.65993 -12.47186 -12.41128 -12.28359 -12.08569 -11.86562 -11.79653 -11.59043 -11.41971 -11.31220 -11.02089 -10.57607 -10.20699 -10.13393 -9.96627 -9.73450 -8.20782 -6.33122 0.67110 0.87736 1.37036 1.42660 1.44562 1.55468 1.59573 1.73813 2.41669 2.67561 3.13619 3.45267 3.60486 3.67091 3.71328 3.74077 3.99370 4.06312 4.11796 4.22887 4.23513 4.36512 4.38258 4.47139 4.56414 4.62165 4.64728 4.67580 4.71756 4.77299 4.78267 4.86069 4.90179 4.97380 5.02708 5.03954 5.11117 5.12656 5.16879 5.42665 5.52870 5.56891 5.61042 5.64916 5.76096 5.77392 5.84261 5.97260 6.14870 6.21942 6.82439 7.36980 7.67697 8.91392 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.018648 B = 0.003295 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.124486 B = 8495.543409 C = 9115.356147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.168 4.168 3 C -0.118 4.118 4 C 0.143 3.857 5 N -0.452 5.452 6 C 0.204 3.796 7 C -0.016 4.016 8 C 0.045 3.955 9 C -0.538 4.538 10 H 0.072 0.928 11 C 0.002 3.998 12 N -0.934 5.934 13 Si 0.967 3.033 14 H -0.268 1.268 15 H -0.287 1.287 16 H -0.260 1.260 17 N -0.335 5.335 18 N -0.349 5.349 19 C 0.342 3.658 20 N -0.446 5.446 21 C 0.068 3.932 22 C -0.070 4.070 23 C -0.139 4.139 24 C -0.185 4.185 25 C -0.069 4.069 26 C 0.075 3.925 27 H 0.120 0.880 28 H 0.112 0.888 29 H 0.053 0.947 30 H 0.086 0.914 31 H 0.061 0.939 32 H 0.112 0.888 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.095 0.905 36 H -0.006 1.006 37 H -0.018 1.018 38 H 0.263 0.737 39 H 0.036 0.964 40 H 0.064 0.936 41 H 0.090 0.910 42 H 0.091 0.909 43 H 0.109 0.891 44 H 0.105 0.895 45 H 0.093 0.907 46 H 0.095 0.905 47 H 0.072 0.928 48 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.678 3.243 0.107 24.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.169 4.169 3 C -0.174 4.174 4 C 0.022 3.978 5 N -0.143 5.143 6 C -0.064 4.064 7 C -0.055 4.055 8 C 0.006 3.994 9 C -0.576 4.576 10 H 0.091 0.909 11 C -0.196 4.196 12 N -0.574 5.574 13 Si 0.791 3.209 14 H -0.194 1.194 15 H -0.213 1.213 16 H -0.184 1.184 17 N -0.175 5.175 18 N -0.193 5.193 19 C -0.015 4.015 20 N -0.173 5.173 21 C -0.059 4.059 22 C -0.108 4.108 23 C -0.139 4.139 24 C -0.221 4.221 25 C -0.107 4.107 26 C -0.051 4.051 27 H 0.138 0.862 28 H 0.130 0.870 29 H 0.072 0.928 30 H 0.105 0.895 31 H 0.080 0.920 32 H 0.130 0.870 33 H 0.112 0.888 34 H 0.105 0.895 35 H 0.113 0.887 36 H 0.012 0.988 37 H 0.000 1.000 38 H 0.072 0.928 39 H 0.055 0.945 40 H 0.083 0.917 41 H 0.109 0.891 42 H 0.109 0.891 43 H 0.128 0.872 44 H 0.123 0.877 45 H 0.111 0.889 46 H 0.113 0.887 47 H 0.091 0.909 48 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -24.392 2.884 -0.779 24.574 hybrid contribution 1.270 -0.154 0.699 1.458 sum -23.122 2.730 -0.081 23.283 Atomic orbital electron populations 1.24063 0.94275 1.03540 0.95383 1.21754 0.96219 0.94235 1.04726 1.20872 1.00525 0.94333 1.01720 1.21076 1.01729 0.97051 0.77939 1.46534 1.11860 1.42116 1.13823 1.25348 0.89642 1.01411 0.90022 1.20169 0.88253 0.97101 0.99994 1.18820 0.93385 0.93532 0.93623 1.21571 1.05481 0.94714 1.35834 0.90935 1.25986 1.01655 0.95505 0.96493 1.70122 1.35661 1.07881 1.43738 0.85413 0.77949 0.78463 0.79038 1.19359 1.21315 1.18438 1.73943 1.12399 1.14829 1.16314 1.74408 1.00867 1.21372 1.22655 1.22508 0.92915 0.99528 0.86557 1.58663 0.98309 1.10063 1.50245 1.22206 0.99551 0.83703 1.00451 1.20855 0.89844 1.00207 0.99845 1.21984 0.96905 0.95899 0.99097 1.23797 0.98013 1.00342 0.99982 1.20880 0.93318 0.93090 1.03389 1.22139 0.91903 0.99393 0.91709 0.86151 0.87021 0.92778 0.89490 0.92017 0.86956 0.88766 0.89462 0.88665 0.98779 0.99979 0.92798 0.94532 0.91714 0.89137 0.89072 0.87238 0.87666 0.88897 0.88680 0.90930 0.94575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.27 13.89 67.78 0.94 -1.33 16 2 C -0.17 -3.67 5.64 -16.48 -0.09 -3.77 16 3 C -0.12 -2.48 9.75 71.24 0.69 -1.79 16 4 C 0.14 3.88 6.11 85.63 0.52 4.41 16 5 N -0.45 -15.54 2.79 -518.92 -1.45 -16.99 16 6 C 0.20 8.47 7.32 137.63 1.01 9.47 16 7 C -0.02 -0.65 5.31 29.85 0.16 -0.49 16 8 C 0.04 2.36 4.96 29.85 0.15 2.51 16 9 C -0.54 -29.59 9.11 25.60 0.23 -29.35 16 10 H 0.07 3.71 7.74 -2.91 -0.02 3.69 16 11 C 0.00 0.09 5.46 84.65 0.46 0.56 16 12 N -0.93 -56.71 13.29 21.45 0.28 -56.42 16 13 Si 0.97 43.27 29.54 68.60 2.03 45.30 16 14 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 15 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 16 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 17 N -0.34 -15.35 12.18 -49.54 -0.60 -15.96 16 18 N -0.35 -14.57 12.13 -58.01 -0.70 -15.27 16 19 C 0.34 11.66 6.40 260.11 1.66 13.32 16 20 N -0.45 -11.23 4.59 -705.23 -3.23 -14.46 16 21 C 0.07 1.62 5.44 86.42 0.47 2.09 16 22 C -0.07 -1.13 6.21 30.18 0.19 -0.94 16 23 C -0.14 -2.06 5.42 -16.02 -0.09 -2.15 16 24 C -0.18 -2.29 14.01 67.78 0.95 -1.35 16 25 C -0.07 -0.99 6.21 30.18 0.19 -0.80 16 26 C 0.08 1.63 5.37 86.42 0.46 2.09 16 27 H 0.12 1.56 8.04 -2.91 -0.02 1.54 16 28 H 0.11 1.77 7.99 -2.91 -0.02 1.75 16 29 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.09 1.41 8.06 -2.39 -0.02 1.39 16 31 H 0.06 1.41 7.44 -2.39 -0.02 1.39 16 32 H 0.11 2.68 7.99 -2.39 -0.02 2.66 16 33 H 0.09 2.80 7.59 -2.39 -0.02 2.78 16 34 H 0.09 3.65 8.14 -2.39 -0.02 3.63 16 35 H 0.10 3.48 6.83 -2.39 -0.02 3.46 16 36 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 37 H -0.02 -1.11 8.14 -2.38 -0.02 -1.13 16 38 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 39 H 0.04 0.99 8.10 -2.39 -0.02 0.97 16 40 H 0.06 1.70 8.06 -2.39 -0.02 1.68 16 41 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 42 H 0.09 1.24 7.93 -2.39 -0.02 1.23 16 43 H 0.11 1.11 7.95 -2.91 -0.02 1.08 16 44 H 0.11 1.15 7.95 -2.91 -0.02 1.13 16 45 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 46 H 0.09 1.06 7.93 -2.39 -0.02 1.04 16 47 H 0.07 1.63 8.06 -2.39 -0.02 1.61 16 48 H 0.04 0.91 8.10 -2.38 -0.02 0.89 16 Total: -1.00 -71.32 395.32 5.15 -66.17 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: 0.91 Total: 15.15 kcal Atomic # 6 Polarization: -15.44 SS G_CDS: 7.91 Total: -7.52 kcal Atomic # 7 Polarization: -113.40 SS G_CDS: -5.71 Total: -119.10 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -71.32 5.15 -66.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343641046.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.551 kcal (2) G-P(sol) polarization free energy of solvation -71.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds