Wall clock time and date at job start Tue Mar 31 2020 11:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 H 1.09005 * 109.47000 * 209.52923 * 3 2 1 5 5 C 1.53005 * 109.47238 * 89.53498 * 3 2 1 6 6 N 1.46899 * 109.47539 * 329.52802 * 3 2 1 7 7 C 1.46891 * 110.99853 * 303.95938 * 6 3 2 8 8 C 1.38580 * 110.99735 * 180.02562 * 6 3 2 9 9 N 1.31217 * 126.47797 * 57.72628 * 8 6 3 10 10 N 1.28518 * 109.86264 * 179.97438 * 9 8 6 11 11 C 1.30303 * 110.05515 * 359.72085 * 10 9 8 12 12 C 1.50699 * 126.34909 * 180.31414 * 11 10 9 13 13 H 1.08996 * 109.46951 * 180.15468 * 12 11 10 14 14 C 1.53006 * 109.46791 * 300.14758 * 12 11 10 15 15 C 1.52994 * 109.47311 * 60.14978 * 12 11 10 16 16 C 1.50700 * 109.47195 * 175.00195 * 15 12 11 17 17 H 1.07997 * 119.99929 * 359.97438 * 16 15 12 18 18 C 1.37875 * 120.00091 * 180.02562 * 16 15 12 19 19 N 1.31510 * 120.00175 * 359.97438 * 18 16 15 20 20 Si 1.86808 * 120.00085 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46753 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47357 * 119.99911 * 20 18 16 23 23 H 1.48500 * 109.46815 * 239.99977 * 20 18 16 24 24 N 1.36456 * 126.46928 * 237.69515 * 8 6 3 25 25 C 1.46504 * 127.13813 * 0.02562 * 24 8 6 26 26 C 1.52998 * 109.46903 * 90.78419 * 25 24 8 27 27 C 1.52997 * 117.49671 * 243.62221 * 26 25 24 28 28 C 1.52998 * 117.49736 * 174.99869 * 26 25 24 29 29 H 4.18742 * 15.03803 * 359.97438 * 4 2 1 30 30 H 1.08999 * 109.46969 * 180.02562 * 5 3 2 31 31 H 1.09005 * 109.46656 * 299.99635 * 5 3 2 32 32 H 1.08994 * 109.47023 * 59.99473 * 5 3 2 33 33 H 1.09006 * 109.47217 * 302.60268 * 7 6 3 34 34 H 1.08993 * 109.47798 * 62.60723 * 7 6 3 35 35 H 1.09004 * 109.46885 * 182.61290 * 7 6 3 36 36 H 1.08991 * 109.47402 * 300.00290 * 14 12 11 37 37 H 1.08996 * 109.46794 * 60.00613 * 14 12 11 38 38 H 1.08998 * 109.46842 * 180.02562 * 14 12 11 39 39 H 1.09003 * 109.47090 * 294.99757 * 15 12 11 40 40 H 1.08996 * 109.47250 * 54.99896 * 15 12 11 41 41 H 0.97001 * 120.00519 * 180.02562 * 19 18 16 42 42 H 1.09002 * 109.46885 * 210.78183 * 25 24 8 43 43 H 1.09000 * 109.46841 * 330.78416 * 25 24 8 44 44 H 1.08999 * 115.55259 * 29.33164 * 26 25 24 45 45 H 1.09005 * 117.50070 * 0.02562 * 27 26 25 46 46 H 1.09002 * 117.49985 * 145.02479 * 27 26 25 47 47 H 1.08997 * 117.50273 * 214.97904 * 28 26 25 48 48 H 1.09000 * 117.49897 * 0.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0089 0.8950 0.5065 5 6 3.1560 -0.0108 -1.4425 6 7 3.1363 -1.1928 0.7023 7 6 2.5896 -1.2640 2.0639 8 6 4.5216 -1.2236 0.7215 9 7 5.3156 -0.3032 1.2157 10 7 6.5418 -0.6574 1.0648 11 6 6.6023 -1.8181 0.4756 12 6 7.8558 -2.5781 0.1263 13 1 7.5883 -3.5151 -0.3620 14 6 8.7152 -1.7371 -0.8199 15 6 8.6445 -2.8754 1.4032 16 6 9.8331 -3.7398 1.0697 17 1 10.0081 -4.0468 0.0492 18 6 10.6964 -4.1396 2.0676 19 7 10.4830 -3.7662 3.3104 20 14 12.1701 -5.2105 1.6541 21 1 12.1856 -5.4894 0.1956 22 1 13.4187 -4.5035 2.0367 23 1 12.0771 -6.4904 2.4014 24 7 5.3177 -2.2172 0.2305 25 6 4.8855 -3.4572 -0.4190 26 6 4.7868 -3.2342 -1.9294 27 6 3.4054 -3.3650 -2.5740 28 6 4.4620 -4.4477 -2.8029 29 1 -1.0500 -0.0006 -0.0009 30 1 4.2460 -0.0108 -1.4424 31 1 2.7931 -0.9052 -1.9490 32 1 2.7922 0.8747 -1.9635 33 1 2.8541 -0.3582 2.6095 34 1 1.5045 -1.3553 2.0155 35 1 3.0047 -2.1315 2.5771 36 1 8.1533 -1.5253 -1.7295 37 1 8.9826 -0.8001 -0.3315 38 1 9.6216 -2.2871 -1.0729 39 1 8.9882 -1.9396 1.8441 40 1 8.0032 -3.3976 2.1131 41 1 11.0905 -4.0471 4.0124 42 1 5.6097 -4.2459 -0.2147 43 1 3.9101 -3.7500 -0.0304 44 1 5.4652 -2.4861 -2.3395 45 1 2.5668 -3.6094 -1.9220 46 1 3.1747 -2.7026 -3.4084 47 1 4.9263 -4.4976 -3.7878 48 1 4.3182 -5.4047 -2.3014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345750584.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:09 Heat of formation + Delta-G solvation = 160.585012 kcal Electronic energy + Delta-G solvation = -27324.871083 eV Core-core repulsion = 23804.926265 eV Total energy + Delta-G solvation = -3519.944818 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.67644 -38.37202 -37.81185 -35.25891 -34.07276 -33.29519 -32.14774 -30.74662 -28.82214 -27.58642 -26.95104 -25.46889 -24.14310 -24.04124 -22.56390 -22.05285 -21.25349 -20.32479 -19.11426 -18.16330 -17.31184 -16.55726 -16.38853 -15.95932 -15.27714 -15.07124 -14.94042 -14.54625 -14.20793 -13.87071 -13.50267 -13.25915 -13.11298 -12.76321 -12.50187 -12.37397 -12.00342 -11.88447 -11.85025 -11.76392 -11.66713 -11.34706 -11.11913 -10.94819 -10.91716 -10.75795 -10.60232 -10.52346 -10.47004 -10.31501 -10.13527 -9.93350 -9.80517 -9.57967 -9.10569 -8.81057 -8.42801 -8.36433 -6.00749 -4.04311 2.00273 2.24344 2.61560 2.75790 3.28669 3.30259 3.38239 3.40855 3.56890 3.80449 4.07741 4.43148 4.48236 4.65576 4.74965 4.80212 4.96537 4.97304 5.07989 5.14225 5.21920 5.34583 5.35221 5.40819 5.42728 5.47819 5.54911 5.57875 5.68536 5.69356 5.75801 5.88869 5.92669 5.97039 5.99777 6.05798 6.09927 6.25742 6.35997 6.53658 6.70190 6.81462 6.91288 7.04869 7.35026 7.45834 7.62182 7.78424 7.98569 8.34603 9.01541 9.17856 9.59387 11.10336 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.017530 B = 0.003580 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.871261 B = 7820.068875 C = 8618.538276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.171 4.171 3 C 0.203 3.797 4 H 0.081 0.919 5 C -0.141 4.141 6 N -0.456 5.456 7 C 0.034 3.966 8 C 0.323 3.677 9 N -0.312 5.312 10 N -0.286 5.286 11 C 0.221 3.779 12 C -0.002 4.002 13 H 0.073 0.927 14 C -0.124 4.124 15 C 0.038 3.962 16 C -0.519 4.519 17 H 0.059 0.941 18 C 0.059 3.941 19 N -0.890 5.890 20 Si 0.891 3.109 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.285 1.285 24 N -0.462 5.462 25 C 0.144 3.856 26 C -0.167 4.167 27 C -0.170 4.170 28 C -0.169 4.169 29 H 0.219 0.781 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.046 0.954 34 H 0.080 0.920 35 H 0.071 0.929 36 H 0.030 0.970 37 H 0.060 0.940 38 H 0.075 0.925 39 H 0.032 0.968 40 H 0.013 0.987 41 H 0.260 0.740 42 H 0.101 0.899 43 H 0.097 0.903 44 H 0.108 0.892 45 H 0.097 0.903 46 H 0.092 0.908 47 H 0.097 0.903 48 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.557 2.093 -11.131 22.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.172 4.172 3 C 0.096 3.904 4 H 0.099 0.901 5 C -0.198 4.198 6 N -0.182 5.182 7 C -0.114 4.114 8 C -0.033 4.033 9 N -0.156 5.156 10 N -0.125 5.125 11 C -0.046 4.046 12 C -0.024 4.024 13 H 0.092 0.908 14 C -0.183 4.183 15 C 0.000 4.000 16 C -0.558 4.558 17 H 0.077 0.923 18 C -0.143 4.143 19 N -0.529 5.529 20 Si 0.719 3.281 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.211 1.211 24 N -0.155 5.155 25 C 0.020 3.980 26 C -0.186 4.186 27 C -0.206 4.206 28 C -0.206 4.206 29 H 0.236 0.764 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.065 0.935 34 H 0.098 0.902 35 H 0.090 0.910 36 H 0.050 0.950 37 H 0.079 0.921 38 H 0.093 0.907 39 H 0.050 0.950 40 H 0.031 0.969 41 H 0.070 0.930 42 H 0.119 0.881 43 H 0.115 0.885 44 H 0.126 0.874 45 H 0.116 0.884 46 H 0.111 0.889 47 H 0.116 0.884 48 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -19.202 2.944 -10.534 22.099 hybrid contribution 0.326 -1.211 -0.201 1.270 sum -18.876 1.733 -10.734 21.784 Atomic orbital electron populations 1.24852 0.95698 0.99944 1.00592 1.22564 0.93561 1.00630 1.00397 1.18533 0.84386 0.91304 0.96187 0.90133 1.21832 1.01520 1.02908 0.93550 1.58620 1.00380 1.40321 1.18843 1.22435 1.00330 1.02303 0.86296 1.21912 0.89910 0.89116 1.02359 1.74530 0.97434 1.23683 1.19952 1.74075 1.10825 1.10580 1.16990 1.25680 0.85880 0.94326 0.98677 1.20008 0.86580 0.94890 1.00878 0.90839 1.21661 0.99526 1.00467 0.96606 1.19110 0.93763 0.97735 0.89383 1.21171 1.09245 1.31239 0.94101 0.92269 1.25002 0.97938 0.96307 0.95023 1.69988 1.37552 1.45346 1.00013 0.86561 0.82872 0.80247 0.78462 1.19682 1.20979 1.21120 1.46335 1.06626 1.17752 1.44743 1.21372 1.02331 0.83975 0.90278 1.22534 1.00451 1.02453 0.93194 1.23031 0.92397 1.02167 1.03048 1.22969 1.03049 0.93662 1.00942 0.76432 0.91871 0.91005 0.91457 0.93522 0.90184 0.90968 0.95043 0.92074 0.90661 0.94969 0.96859 0.92983 0.88077 0.88472 0.87359 0.88411 0.88928 0.88419 0.88386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.65 19.25 29.55 0.57 -1.09 16 2 C -0.17 -1.82 11.19 -37.12 -0.42 -2.23 16 3 C 0.20 2.44 2.46 -70.50 -0.17 2.27 16 4 H 0.08 1.07 8.06 -51.93 -0.42 0.65 16 5 C -0.14 -1.58 9.02 37.16 0.34 -1.24 16 6 N -0.46 -6.00 4.65 -177.98 -0.83 -6.83 16 7 C 0.03 0.41 9.13 60.06 0.55 0.96 16 8 C 0.32 5.26 5.04 -318.87 -1.61 3.65 16 9 N -0.31 -6.12 12.09 30.31 0.37 -5.75 16 10 N -0.29 -6.18 12.18 32.99 0.40 -5.77 16 11 C 0.22 4.32 6.58 -154.01 -1.01 3.31 16 12 C 0.00 -0.05 2.70 -91.77 -0.25 -0.30 16 13 H 0.07 1.37 6.95 -51.93 -0.36 1.01 16 14 C -0.12 -2.32 8.99 37.16 0.33 -1.99 16 15 C 0.04 0.97 4.43 -27.89 -0.12 0.85 16 16 C -0.52 -13.97 8.41 -34.44 -0.29 -14.26 16 17 H 0.06 1.51 7.06 -52.49 -0.37 1.14 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 19 N -0.89 -26.58 13.29 55.43 0.74 -25.84 16 20 Si 0.89 21.12 29.54 -169.99 -5.02 16.09 16 21 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 N -0.46 -7.47 2.81 -114.08 -0.32 -7.79 16 25 C 0.14 1.80 6.16 -4.04 -0.02 1.78 16 26 C -0.17 -1.79 6.01 -90.62 -0.54 -2.34 16 27 C -0.17 -1.48 8.95 -26.73 -0.24 -1.72 16 28 C -0.17 -1.46 10.25 -26.73 -0.27 -1.73 16 29 H 0.22 1.07 7.80 -54.09 -0.42 0.65 16 30 H 0.06 0.84 7.22 -51.93 -0.38 0.47 16 31 H 0.07 0.75 6.80 -51.93 -0.35 0.40 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.08 0.81 7.09 -51.93 -0.37 0.44 16 35 H 0.07 0.90 8.10 -51.93 -0.42 0.48 16 36 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.07 1.42 6.95 -51.93 -0.36 1.06 16 39 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 42 H 0.10 1.29 7.25 -51.93 -0.38 0.91 16 43 H 0.10 1.10 7.88 -51.93 -0.41 0.69 16 44 H 0.11 1.32 8.14 -51.93 -0.42 0.90 16 45 H 0.10 0.84 8.03 -51.93 -0.42 0.43 16 46 H 0.09 0.76 8.09 -51.93 -0.42 0.34 16 47 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 48 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 398.76 15.07 6.01 6.01 Total: -1.00 -32.00 398.76 -9.93 -41.92 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -8.01 Total: 0.49 kcal Atomic # 6 Polarization: -9.26 SS G_CDS: -3.26 Total: -12.52 kcal Atomic # 7 Polarization: -52.35 SS G_CDS: 0.36 Total: -51.99 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.00 -9.93 -41.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345750584.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 202.510 kcal (2) G-P(sol) polarization free energy of solvation -31.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 170.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 160.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds