Wall clock time and date at job start Tue Mar 31 2020 11:53:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 H 1.09005 * 109.47000 * 209.52923 * 3 2 1 5 5 C 1.53005 * 109.47238 * 89.53498 * 3 2 1 6 6 N 1.46899 * 109.47539 * 329.52802 * 3 2 1 7 7 C 1.46891 * 110.99853 * 303.95938 * 6 3 2 8 8 C 1.38580 * 110.99735 * 180.02562 * 6 3 2 9 9 N 1.31217 * 126.47797 * 57.72628 * 8 6 3 10 10 N 1.28518 * 109.86264 * 179.97438 * 9 8 6 11 11 C 1.30303 * 110.05515 * 359.72085 * 10 9 8 12 12 C 1.50699 * 126.34909 * 180.31414 * 11 10 9 13 13 H 1.08996 * 109.46951 * 180.15468 * 12 11 10 14 14 C 1.53006 * 109.46791 * 300.14758 * 12 11 10 15 15 C 1.52994 * 109.47311 * 60.14978 * 12 11 10 16 16 C 1.50700 * 109.47195 * 175.00195 * 15 12 11 17 17 H 1.07997 * 119.99929 * 359.97438 * 16 15 12 18 18 C 1.37875 * 120.00091 * 180.02562 * 16 15 12 19 19 N 1.31510 * 120.00175 * 359.97438 * 18 16 15 20 20 Si 1.86808 * 120.00085 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46753 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47357 * 119.99911 * 20 18 16 23 23 H 1.48500 * 109.46815 * 239.99977 * 20 18 16 24 24 N 1.36456 * 126.46928 * 237.69515 * 8 6 3 25 25 C 1.46504 * 127.13813 * 0.02562 * 24 8 6 26 26 C 1.52998 * 109.46903 * 90.78419 * 25 24 8 27 27 C 1.52997 * 117.49671 * 243.62221 * 26 25 24 28 28 C 1.52998 * 117.49736 * 174.99869 * 26 25 24 29 29 H 4.18742 * 15.03803 * 359.97438 * 4 2 1 30 30 H 1.08999 * 109.46969 * 180.02562 * 5 3 2 31 31 H 1.09005 * 109.46656 * 299.99635 * 5 3 2 32 32 H 1.08994 * 109.47023 * 59.99473 * 5 3 2 33 33 H 1.09006 * 109.47217 * 302.60268 * 7 6 3 34 34 H 1.08993 * 109.47798 * 62.60723 * 7 6 3 35 35 H 1.09004 * 109.46885 * 182.61290 * 7 6 3 36 36 H 1.08991 * 109.47402 * 300.00290 * 14 12 11 37 37 H 1.08996 * 109.46794 * 60.00613 * 14 12 11 38 38 H 1.08998 * 109.46842 * 180.02562 * 14 12 11 39 39 H 1.09003 * 109.47090 * 294.99757 * 15 12 11 40 40 H 1.08996 * 109.47250 * 54.99896 * 15 12 11 41 41 H 0.97001 * 120.00519 * 180.02562 * 19 18 16 42 42 H 1.09002 * 109.46885 * 210.78183 * 25 24 8 43 43 H 1.09000 * 109.46841 * 330.78416 * 25 24 8 44 44 H 1.08999 * 115.55259 * 29.33164 * 26 25 24 45 45 H 1.09005 * 117.50070 * 0.02562 * 27 26 25 46 46 H 1.09002 * 117.49985 * 145.02479 * 27 26 25 47 47 H 1.08997 * 117.50273 * 214.97904 * 28 26 25 48 48 H 1.09000 * 117.49897 * 0.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0089 0.8950 0.5065 5 6 3.1560 -0.0108 -1.4425 6 7 3.1363 -1.1928 0.7023 7 6 2.5896 -1.2640 2.0639 8 6 4.5216 -1.2236 0.7215 9 7 5.3156 -0.3032 1.2157 10 7 6.5418 -0.6574 1.0648 11 6 6.6023 -1.8181 0.4756 12 6 7.8558 -2.5781 0.1263 13 1 7.5883 -3.5151 -0.3620 14 6 8.7152 -1.7371 -0.8199 15 6 8.6445 -2.8754 1.4032 16 6 9.8331 -3.7398 1.0697 17 1 10.0081 -4.0468 0.0492 18 6 10.6964 -4.1396 2.0676 19 7 10.4830 -3.7662 3.3104 20 14 12.1701 -5.2105 1.6541 21 1 12.1856 -5.4894 0.1956 22 1 13.4187 -4.5035 2.0367 23 1 12.0771 -6.4904 2.4014 24 7 5.3177 -2.2172 0.2305 25 6 4.8855 -3.4572 -0.4190 26 6 4.7868 -3.2342 -1.9294 27 6 3.4054 -3.3650 -2.5740 28 6 4.4620 -4.4477 -2.8029 29 1 -1.0500 -0.0006 -0.0009 30 1 4.2460 -0.0108 -1.4424 31 1 2.7931 -0.9052 -1.9490 32 1 2.7922 0.8747 -1.9635 33 1 2.8541 -0.3582 2.6095 34 1 1.5045 -1.3553 2.0155 35 1 3.0047 -2.1315 2.5771 36 1 8.1533 -1.5253 -1.7295 37 1 8.9826 -0.8001 -0.3315 38 1 9.6216 -2.2871 -1.0729 39 1 8.9882 -1.9396 1.8441 40 1 8.0032 -3.3976 2.1131 41 1 11.0905 -4.0471 4.0124 42 1 5.6097 -4.2459 -0.2147 43 1 3.9101 -3.7500 -0.0304 44 1 5.4652 -2.4861 -2.3395 45 1 2.5668 -3.6094 -1.9220 46 1 3.1747 -2.7026 -3.4084 47 1 4.9263 -4.4976 -3.7878 48 1 4.3182 -5.4047 -2.3014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345750584.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:08 Heat of formation + Delta-G solvation = 144.169264 kcal Electronic energy + Delta-G solvation = -27325.582923 eV Core-core repulsion = 23804.926265 eV Total energy + Delta-G solvation = -3520.656658 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.08548 -39.44498 -38.66525 -36.99656 -35.31138 -34.47290 -33.91900 -31.61609 -30.32756 -28.90076 -28.63443 -26.56172 -25.89455 -25.08439 -23.80886 -23.17815 -22.33987 -21.46157 -20.60174 -19.02015 -18.67578 -18.31572 -17.61132 -17.13659 -16.49835 -16.33094 -16.16119 -15.88710 -15.42256 -15.08560 -14.97152 -14.52537 -14.30953 -14.11339 -13.84770 -13.55230 -13.41079 -12.99249 -12.98511 -12.82978 -12.78940 -12.77516 -12.70778 -12.45995 -12.32024 -12.24422 -12.05636 -11.76073 -11.55764 -11.47027 -11.38905 -11.20883 -11.15466 -10.97593 -10.91924 -10.55388 -9.99848 -9.92669 -8.15865 -6.27385 0.68463 1.08678 1.43892 1.44985 1.57624 1.74591 1.87012 1.89034 2.44155 2.71928 2.89148 3.18446 3.30232 3.40727 3.60165 3.75222 3.84627 3.95196 4.01045 4.06516 4.16449 4.19820 4.23305 4.32243 4.42488 4.50848 4.52227 4.54804 4.59657 4.72259 4.74264 4.81428 4.82962 5.00467 5.04586 5.08236 5.08536 5.10083 5.13992 5.22882 5.29053 5.37005 5.45958 5.50939 5.54482 5.69739 5.84229 6.17580 6.21804 6.65900 6.88562 7.41861 7.71494 8.96860 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.017530 B = 0.003580 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.871261 B = 7820.068875 C = 8618.538276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.219 4.219 3 C 0.205 3.795 4 H 0.060 0.940 5 C -0.133 4.133 6 N -0.447 5.447 7 C 0.035 3.965 8 C 0.346 3.654 9 N -0.348 5.348 10 N -0.326 5.326 11 C 0.208 3.792 12 C 0.010 3.990 13 H 0.094 0.906 14 C -0.116 4.116 15 C 0.051 3.949 16 C -0.526 4.526 17 H 0.077 0.923 18 C -0.002 4.002 19 N -0.937 5.937 20 Si 0.966 3.034 21 H -0.252 1.252 22 H -0.284 1.284 23 H -0.282 1.282 24 N -0.455 5.455 25 C 0.139 3.861 26 C -0.184 4.184 27 C -0.157 4.157 28 C -0.154 4.154 29 H 0.256 0.744 30 H 0.035 0.965 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.034 0.966 34 H 0.107 0.893 35 H 0.065 0.935 36 H 0.060 0.940 37 H 0.040 0.960 38 H 0.074 0.926 39 H -0.010 1.010 40 H -0.022 1.022 41 H 0.261 0.739 42 H 0.098 0.902 43 H 0.112 0.888 44 H 0.092 0.908 45 H 0.103 0.897 46 H 0.100 0.900 47 H 0.107 0.893 48 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.819 0.515 -13.675 25.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.220 4.220 3 C 0.098 3.902 4 H 0.078 0.922 5 C -0.190 4.190 6 N -0.173 5.173 7 C -0.112 4.112 8 C -0.011 4.011 9 N -0.192 5.192 10 N -0.166 5.166 11 C -0.060 4.060 12 C -0.011 4.011 13 H 0.112 0.888 14 C -0.174 4.174 15 C 0.013 3.987 16 C -0.564 4.564 17 H 0.095 0.905 18 C -0.200 4.200 19 N -0.578 5.578 20 Si 0.790 3.210 21 H -0.176 1.176 22 H -0.210 1.210 23 H -0.208 1.208 24 N -0.147 5.147 25 C 0.017 3.983 26 C -0.203 4.203 27 C -0.194 4.194 28 C -0.191 4.191 29 H 0.272 0.728 30 H 0.054 0.946 31 H 0.100 0.900 32 H 0.101 0.899 33 H 0.053 0.947 34 H 0.125 0.875 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.059 0.941 38 H 0.093 0.907 39 H 0.008 0.992 40 H -0.003 1.003 41 H 0.070 0.930 42 H 0.116 0.884 43 H 0.130 0.870 44 H 0.110 0.890 45 H 0.121 0.879 46 H 0.119 0.881 47 H 0.125 0.875 48 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -21.482 1.358 -13.109 25.203 hybrid contribution 0.836 -0.680 0.611 1.239 sum -20.647 0.678 -12.498 24.144 Atomic orbital electron populations 1.25701 0.96288 0.97027 0.97764 1.22340 0.93354 1.03269 1.03010 1.18408 0.86013 0.89744 0.96022 0.92207 1.21773 0.99614 1.04154 0.93472 1.58915 0.98009 1.40981 1.19431 1.22481 1.01821 1.01420 0.85498 1.22223 0.91042 0.88024 0.99794 1.74438 0.97238 1.25441 1.22056 1.73966 1.12290 1.12076 1.18222 1.25364 0.86943 0.94214 0.99510 1.19742 0.86621 0.96262 0.98479 0.88836 1.21567 0.99587 0.99106 0.97161 1.18847 0.93764 0.95049 0.91072 1.21592 1.09281 1.30653 0.94837 0.90519 1.26007 1.01343 0.97862 0.94758 1.70156 1.39074 1.47146 1.01380 0.85387 0.78406 0.77963 0.79226 1.17555 1.21033 1.20772 1.46458 1.05411 1.18587 1.44208 1.21675 1.02785 0.82223 0.91609 1.22354 1.02123 1.04001 0.91849 1.23081 0.91517 1.02010 1.02761 1.23074 1.02046 0.93342 1.00685 0.72790 0.94603 0.89975 0.89946 0.94735 0.87465 0.91565 0.92081 0.94075 0.90685 0.99178 1.00331 0.93001 0.88364 0.86996 0.88960 0.87855 0.88123 0.87484 0.87391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 19.25 74.32 1.43 -0.56 16 2 C -0.22 -4.16 11.19 31.13 0.35 -3.81 16 3 C 0.20 4.83 2.46 43.11 0.11 4.94 16 4 H 0.06 1.65 8.06 -2.38 -0.02 1.63 16 5 C -0.13 -2.88 9.02 71.98 0.65 -2.23 16 6 N -0.45 -11.59 4.65 -717.01 -3.33 -14.92 16 7 C 0.03 0.82 9.13 127.69 1.17 1.99 16 8 C 0.35 11.57 5.04 260.11 1.31 12.88 16 9 N -0.35 -14.40 12.09 -58.00 -0.70 -15.11 16 10 N -0.33 -14.99 12.18 -49.53 -0.60 -15.59 16 11 C 0.21 8.47 6.58 137.64 0.91 9.38 16 12 C 0.01 0.41 2.70 -11.54 -0.03 0.38 16 13 H 0.09 3.45 6.95 -2.39 -0.02 3.44 16 14 C -0.12 -4.37 8.99 71.98 0.65 -3.73 16 15 C 0.05 2.72 4.43 29.85 0.13 2.86 16 16 C -0.53 -28.70 8.41 25.60 0.22 -28.49 16 17 H 0.08 3.84 7.06 -2.91 -0.02 3.82 16 18 C 0.00 -0.13 5.46 84.65 0.46 0.33 16 19 N -0.94 -57.98 13.29 21.45 0.28 -57.70 16 20 Si 0.97 43.46 29.54 68.60 2.03 45.48 16 21 H -0.25 -10.45 7.11 99.48 0.71 -9.74 16 22 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 23 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 24 N -0.46 -14.97 2.81 -514.84 -1.45 -16.42 16 25 C 0.14 3.35 6.16 86.38 0.53 3.89 16 26 C -0.18 -3.64 6.01 -10.80 -0.06 -3.71 16 27 C -0.16 -2.30 8.95 30.59 0.27 -2.03 16 28 C -0.15 -2.21 10.25 30.59 0.31 -1.90 16 29 H 0.26 1.12 7.80 -4.42 -0.03 1.08 16 30 H 0.03 0.97 7.22 -2.39 -0.02 0.95 16 31 H 0.08 1.58 6.80 -2.38 -0.02 1.56 16 32 H 0.08 1.50 8.14 -2.39 -0.02 1.49 16 33 H 0.03 0.90 8.14 -2.38 -0.02 0.88 16 34 H 0.11 1.95 7.09 -2.39 -0.02 1.94 16 35 H 0.07 1.63 8.10 -2.38 -0.02 1.62 16 36 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.07 2.79 6.95 -2.39 -0.02 2.78 16 39 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 40 H -0.02 -1.29 8.14 -2.39 -0.02 -1.31 16 41 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 42 H 0.10 2.42 7.25 -2.39 -0.02 2.40 16 43 H 0.11 2.35 7.88 -2.39 -0.02 2.34 16 44 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 45 H 0.10 1.44 8.03 -2.38 -0.02 1.42 16 46 H 0.10 1.34 8.09 -2.39 -0.02 1.33 16 47 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 48 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -73.59 398.76 5.55 -68.05 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: 0.92 Total: 16.02 kcal Atomic # 6 Polarization: -18.21 SS G_CDS: 8.40 Total: -9.82 kcal Atomic # 7 Polarization: -113.94 SS G_CDS: -5.80 Total: -119.73 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.48 kcal Total: -73.59 5.55 -68.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345750584.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 212.215 kcal (2) G-P(sol) polarization free energy of solvation -73.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds