Wall clock time and date at job start Tue Mar 31 2020 11:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52996 * 109.46976 * 2 1 4 4 C 1.50706 * 109.46845 * 240.00117 * 2 1 3 5 5 H 1.07997 * 119.99870 * 239.99898 * 4 2 1 6 6 C 1.37878 * 119.99853 * 60.00335 * 4 2 1 7 7 N 1.31512 * 120.00046 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99666 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47295 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47369 * 119.99939 * 8 6 4 11 11 H 1.48505 * 109.46733 * 239.99677 * 8 6 4 12 12 C 1.50697 * 109.47076 * 120.00251 * 2 1 3 13 13 N 1.30294 * 126.34823 * 122.14654 * 12 2 1 14 14 N 1.28526 * 110.05404 * 179.97438 * 13 12 2 15 15 C 1.31218 * 109.86187 * 359.97438 * 14 13 12 16 16 N 1.38573 * 126.47325 * 179.74033 * 15 14 13 17 17 C 1.46845 * 111.00403 * 69.95389 * 16 15 14 18 18 C 1.50143 * 110.27702 * 287.52211 * 17 16 15 19 19 C 1.29829 * 123.28728 * 342.98495 * 18 17 16 20 20 C 1.50307 * 122.88966 * 0.32961 * 19 18 17 21 21 C 1.47246 * 111.00256 * 307.02172 * 16 15 14 22 22 N 1.36458 * 107.05077 * 359.97438 * 15 14 13 23 23 C 1.46493 * 127.13429 * 179.97438 * 22 15 14 24 24 C 1.53002 * 109.47219 * 83.49818 * 23 22 15 25 25 C 1.52998 * 117.49850 * 249.09260 * 24 23 22 26 26 C 1.52992 * 60.00178 * 252.51017 * 25 24 23 27 27 H 1.08992 * 109.46947 * 317.79799 * 1 2 3 28 28 H 1.09003 * 109.47034 * 77.80284 * 1 2 3 29 29 H 1.09001 * 109.46706 * 197.79548 * 1 2 3 30 30 H 1.09001 * 109.46799 * 180.02562 * 3 2 1 31 31 H 1.08998 * 109.47418 * 300.00260 * 3 2 1 32 32 H 1.08996 * 109.47097 * 60.00177 * 3 2 1 33 33 H 0.96999 * 119.99515 * 180.02562 * 7 6 4 34 34 H 1.09005 * 109.33660 * 47.77822 * 17 16 15 35 35 H 1.08993 * 109.34194 * 167.28963 * 17 16 15 36 36 H 1.08007 * 118.36143 * 162.94108 * 18 17 16 37 37 H 1.07995 * 118.55713 * 180.35638 * 19 18 17 38 38 H 1.08998 * 109.43213 * 223.45555 * 20 19 18 39 39 H 1.08997 * 109.39117 * 103.57488 * 20 19 18 40 40 H 1.09000 * 109.63716 * 174.28019 * 21 16 15 41 41 H 1.09002 * 109.62960 * 294.89150 * 21 16 15 42 42 H 1.09002 * 109.47482 * 203.49886 * 23 22 15 43 43 H 1.09003 * 109.47558 * 323.49713 * 23 22 15 44 44 H 1.08993 * 115.55099 * 34.80211 * 24 23 22 45 45 H 1.09000 * 117.49934 * 0.02562 * 25 24 23 46 46 H 1.09004 * 117.49719 * 145.01834 * 25 24 23 47 47 H 1.08998 * 117.49863 * 252.51025 * 26 25 24 48 48 H 1.09008 * 117.49789 * 107.48984 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6993 -0.2393 -2.4828 7 7 0.9428 0.8298 -2.6034 8 14 2.3213 -1.1203 -4.0080 9 1 3.1463 -2.2870 -3.6039 10 1 1.1660 -1.5865 -4.8161 11 1 3.1466 -0.1873 -4.8166 12 6 2.0324 -0.7104 1.2304 13 7 2.8162 -1.7509 1.2554 14 7 3.0470 -2.0998 2.4707 15 6 2.4180 -1.2936 3.2931 16 7 2.4247 -1.3594 4.6772 17 6 3.7396 -0.9882 5.2154 18 6 4.7374 -2.0780 4.9491 19 6 4.4002 -3.2895 4.6262 20 6 2.9697 -3.7265 4.4779 21 6 2.0455 -2.7036 5.1435 22 7 1.7517 -0.3814 2.5275 23 6 0.9087 0.7206 2.9979 24 6 1.7886 1.9225 3.3475 25 6 1.9089 2.3042 4.8242 26 6 1.0917 3.1795 3.8720 27 1 -0.3633 0.7612 0.6903 28 1 -0.3633 0.2171 -1.0045 29 1 -0.3633 -0.9785 0.3141 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 0.7083 1.1609 -3.4844 34 1 4.0766 -0.0664 4.7411 35 1 3.6577 -0.8290 6.2905 36 1 5.7883 -1.8423 5.0295 37 1 5.1818 -4.0153 4.4572 38 1 2.8363 -4.6985 4.9528 39 1 2.7227 -3.8033 3.4190 40 1 2.1557 -2.7603 6.2264 41 1 1.0115 -2.9092 4.8663 42 1 0.2059 1.0009 2.2133 43 1 0.3575 0.4041 3.8834 44 1 2.6682 2.0600 2.7186 45 1 1.3614 1.6988 5.5467 46 1 2.8678 2.6928 5.1671 47 1 1.5130 4.1439 3.5884 48 1 0.0062 3.1502 3.9679 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346611305.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:15 Heat of formation + Delta-G solvation = 147.233574 kcal Electronic energy + Delta-G solvation = -28520.269688 eV Core-core repulsion = 24999.745908 eV Total energy + Delta-G solvation = -3520.523780 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.34510 -39.11024 -37.62789 -35.60331 -33.78140 -32.56138 -31.11313 -30.82512 -28.37044 -27.30529 -25.89663 -25.22771 -24.44211 -23.21501 -22.39601 -21.90216 -21.00108 -20.43961 -19.05470 -18.24030 -16.45201 -16.30870 -16.02739 -15.68514 -14.95929 -14.84526 -14.73372 -14.45989 -13.84989 -13.72157 -13.39742 -13.15219 -12.91682 -12.50341 -12.42225 -12.01307 -11.89437 -11.74240 -11.69349 -11.53208 -11.23509 -11.16008 -10.87664 -10.72357 -10.64731 -10.57116 -10.32482 -10.08372 -10.02268 -9.95403 -9.80937 -9.62771 -9.41492 -8.85307 -8.72139 -8.43251 -8.36443 -7.99683 -6.00953 -4.06847 2.47410 2.49528 2.85333 3.33170 3.41377 3.50894 3.72628 3.78440 4.09803 4.46089 4.72317 4.86927 4.94769 4.99408 5.05146 5.11844 5.22396 5.27646 5.28334 5.48889 5.52604 5.54801 5.60632 5.61116 5.67592 5.68332 5.85208 5.86812 5.94465 6.10129 6.14695 6.22121 6.24397 6.39826 6.55008 6.65382 6.68800 6.74410 6.80517 6.82214 6.85848 7.10073 7.16137 7.34730 7.36194 7.69212 7.87737 7.88122 8.12474 8.35281 9.01150 9.55986 9.69531 11.02115 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.013501 B = 0.005278 C = 0.004138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.461885 B = 5304.158135 C = 6764.483554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.146 3.854 3 C -0.135 4.135 4 C -0.488 4.488 5 H 0.077 0.923 6 C 0.060 3.940 7 N -0.894 5.894 8 Si 0.897 3.103 9 H -0.270 1.270 10 H -0.285 1.285 11 H -0.285 1.285 12 C 0.243 3.757 13 N -0.296 5.296 14 N -0.308 5.308 15 C 0.304 3.696 16 N -0.451 5.451 17 C 0.101 3.899 18 C -0.210 4.210 19 C -0.106 4.106 20 C -0.134 4.134 21 C 0.065 3.935 22 N -0.465 5.465 23 C 0.141 3.859 24 C -0.165 4.165 25 C -0.171 4.171 26 C -0.170 4.170 27 H 0.017 0.983 28 H 0.100 0.900 29 H 0.023 0.977 30 H 0.028 0.972 31 H 0.096 0.904 32 H 0.018 0.982 33 H 0.260 0.740 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.103 0.897 37 H 0.101 0.899 38 H 0.068 0.932 39 H 0.111 0.889 40 H 0.083 0.917 41 H 0.076 0.924 42 H 0.107 0.893 43 H 0.087 0.913 44 H 0.109 0.891 45 H 0.097 0.903 46 H 0.090 0.910 47 H 0.096 0.904 48 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.238 1.279 17.114 17.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.143 3.857 3 C -0.193 4.193 4 C -0.527 4.527 5 H 0.095 0.905 6 C -0.140 4.140 7 N -0.534 5.534 8 Si 0.725 3.275 9 H -0.195 1.195 10 H -0.211 1.211 11 H -0.212 1.212 12 C -0.024 4.024 13 N -0.133 5.133 14 N -0.152 5.152 15 C -0.052 4.052 16 N -0.175 5.175 17 C -0.027 4.027 18 C -0.229 4.229 19 C -0.125 4.125 20 C -0.172 4.172 21 C -0.063 4.063 22 N -0.158 5.158 23 C 0.018 3.982 24 C -0.184 4.184 25 C -0.208 4.208 26 C -0.208 4.208 27 H 0.036 0.964 28 H 0.118 0.882 29 H 0.042 0.958 30 H 0.047 0.953 31 H 0.115 0.885 32 H 0.037 0.963 33 H 0.070 0.930 34 H 0.097 0.903 35 H 0.108 0.892 36 H 0.121 0.879 37 H 0.119 0.881 38 H 0.086 0.914 39 H 0.128 0.872 40 H 0.102 0.898 41 H 0.095 0.905 42 H 0.125 0.875 43 H 0.105 0.895 44 H 0.127 0.873 45 H 0.116 0.884 46 H 0.108 0.892 47 H 0.114 0.886 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.197 0.587 16.678 16.689 hybrid contribution 0.275 0.145 -0.587 0.664 sum 0.472 0.733 16.091 16.115 Atomic orbital electron populations 1.21984 0.96612 0.96970 1.03652 1.16907 0.92299 0.91559 0.84926 1.21979 0.98941 0.97048 1.01345 1.21149 1.30715 1.12391 0.88411 0.90469 1.24872 0.95086 0.95085 0.98910 1.69805 1.37225 1.23045 1.23277 0.86422 0.78620 0.79878 0.82535 1.19487 1.21142 1.21159 1.26170 0.96232 0.95054 0.84957 1.74136 1.15726 1.12175 1.11300 1.74667 1.20462 1.22967 0.97078 1.22125 0.99675 0.93158 0.90254 1.59255 1.28497 1.27997 1.01701 1.20957 0.84923 0.96959 0.99831 1.22495 0.99743 0.95591 1.05068 1.21887 0.97103 0.96574 0.96926 1.21378 0.93167 0.98327 1.04317 1.22218 0.99163 0.85470 0.99420 1.46306 1.38157 1.24333 1.06987 1.21482 0.91762 0.83655 1.01319 1.22590 1.02415 0.95739 0.97637 1.23002 1.01769 1.03368 0.92638 1.22916 0.99312 0.94725 1.03838 0.96376 0.88159 0.95804 0.95285 0.88547 0.96341 0.93029 0.90302 0.89225 0.87917 0.88138 0.91395 0.87157 0.89834 0.90505 0.87492 0.89465 0.87270 0.88432 0.89166 0.88597 0.88606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.02 8.07 37.16 0.30 -2.72 16 2 C 0.15 3.48 0.49 -156.81 -0.08 3.40 16 3 C -0.13 -3.05 8.09 37.16 0.30 -2.75 16 4 C -0.49 -13.20 7.91 -34.44 -0.27 -13.47 16 5 H 0.08 2.23 6.94 -52.49 -0.36 1.86 16 6 C 0.06 1.60 5.05 -17.82 -0.09 1.51 16 7 N -0.89 -23.56 9.39 55.43 0.52 -23.04 16 8 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 9 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 10 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 C 0.24 5.52 6.25 -154.02 -0.96 4.55 16 13 N -0.30 -7.25 10.99 32.99 0.36 -6.88 16 14 N -0.31 -6.57 7.79 30.31 0.24 -6.34 16 15 C 0.30 5.55 6.21 -318.88 -1.98 3.57 16 16 N -0.45 -6.47 5.06 -175.91 -0.89 -7.36 16 17 C 0.10 1.29 5.91 -5.28 -0.03 1.26 16 18 C -0.21 -2.84 9.39 -35.97 -0.34 -3.18 16 19 C -0.11 -1.49 8.96 -35.89 -0.32 -1.81 16 20 C -0.13 -1.85 5.50 -28.03 -0.15 -2.00 16 21 C 0.06 0.82 6.02 -3.59 -0.02 0.80 16 22 N -0.47 -8.72 2.81 -114.09 -0.32 -9.04 16 23 C 0.14 2.13 5.52 -4.04 -0.02 2.11 16 24 C -0.16 -2.22 4.84 -90.62 -0.44 -2.66 16 25 C -0.17 -1.82 10.18 -26.74 -0.27 -2.10 16 26 C -0.17 -1.82 10.25 -26.74 -0.27 -2.10 16 27 H 0.02 0.35 5.58 -51.93 -0.29 0.06 16 28 H 0.10 2.49 5.81 -51.93 -0.30 2.19 16 29 H 0.02 0.52 8.01 -51.93 -0.42 0.11 16 30 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.10 2.37 6.07 -51.93 -0.32 2.06 16 32 H 0.02 0.35 4.80 -51.93 -0.25 0.10 16 33 H 0.26 6.60 8.31 -40.82 -0.34 6.26 16 34 H 0.08 1.10 8.02 -51.93 -0.42 0.68 16 35 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.10 1.28 8.06 -52.48 -0.42 0.86 16 37 H 0.10 1.32 8.06 -52.49 -0.42 0.90 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.11 1.93 5.82 -51.93 -0.30 1.63 16 40 H 0.08 0.85 8.08 -51.93 -0.42 0.43 16 41 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.11 1.70 4.59 -51.93 -0.24 1.46 16 43 H 0.09 1.17 7.90 -51.93 -0.41 0.76 16 44 H 0.11 1.74 7.53 -51.93 -0.39 1.35 16 45 H 0.10 0.98 8.05 -51.93 -0.42 0.57 16 46 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 47 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 48 H 0.10 0.93 8.14 -51.92 -0.42 0.50 16 LS Contribution 364.15 15.07 5.49 5.49 Total: -1.00 -29.05 364.15 -11.75 -40.80 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -7.47 Total: 5.64 kcal Atomic # 6 Polarization: -10.91 SS G_CDS: -4.65 Total: -15.57 kcal Atomic # 7 Polarization: -52.58 SS G_CDS: -0.09 Total: -52.67 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -29.05 -11.75 -40.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346611305.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.035 kcal (2) G-P(sol) polarization free energy of solvation -29.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 158.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 147.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds