Wall clock time and date at job start Tue Mar 31 2020 11:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52996 * 109.46976 * 2 1 4 4 C 1.50706 * 109.46845 * 240.00117 * 2 1 3 5 5 H 1.07997 * 119.99870 * 239.99898 * 4 2 1 6 6 C 1.37878 * 119.99853 * 60.00335 * 4 2 1 7 7 N 1.31512 * 120.00046 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99666 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47295 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47369 * 119.99939 * 8 6 4 11 11 H 1.48505 * 109.46733 * 239.99677 * 8 6 4 12 12 C 1.50697 * 109.47076 * 120.00251 * 2 1 3 13 13 N 1.30294 * 126.34823 * 122.14654 * 12 2 1 14 14 N 1.28526 * 110.05404 * 179.97438 * 13 12 2 15 15 C 1.31218 * 109.86187 * 359.97438 * 14 13 12 16 16 N 1.38573 * 126.47325 * 179.74033 * 15 14 13 17 17 C 1.46845 * 111.00403 * 69.95389 * 16 15 14 18 18 C 1.50143 * 110.27702 * 287.52211 * 17 16 15 19 19 C 1.29829 * 123.28728 * 342.98495 * 18 17 16 20 20 C 1.50307 * 122.88966 * 0.32961 * 19 18 17 21 21 C 1.47246 * 111.00256 * 307.02172 * 16 15 14 22 22 N 1.36458 * 107.05077 * 359.97438 * 15 14 13 23 23 C 1.46493 * 127.13429 * 179.97438 * 22 15 14 24 24 C 1.53002 * 109.47219 * 83.49818 * 23 22 15 25 25 C 1.52998 * 117.49850 * 249.09260 * 24 23 22 26 26 C 1.52992 * 60.00178 * 252.51017 * 25 24 23 27 27 H 1.08992 * 109.46947 * 317.79799 * 1 2 3 28 28 H 1.09003 * 109.47034 * 77.80284 * 1 2 3 29 29 H 1.09001 * 109.46706 * 197.79548 * 1 2 3 30 30 H 1.09001 * 109.46799 * 180.02562 * 3 2 1 31 31 H 1.08998 * 109.47418 * 300.00260 * 3 2 1 32 32 H 1.08996 * 109.47097 * 60.00177 * 3 2 1 33 33 H 0.96999 * 119.99515 * 180.02562 * 7 6 4 34 34 H 1.09005 * 109.33660 * 47.77822 * 17 16 15 35 35 H 1.08993 * 109.34194 * 167.28963 * 17 16 15 36 36 H 1.08007 * 118.36143 * 162.94108 * 18 17 16 37 37 H 1.07995 * 118.55713 * 180.35638 * 19 18 17 38 38 H 1.08998 * 109.43213 * 223.45555 * 20 19 18 39 39 H 1.08997 * 109.39117 * 103.57488 * 20 19 18 40 40 H 1.09000 * 109.63716 * 174.28019 * 21 16 15 41 41 H 1.09002 * 109.62960 * 294.89150 * 21 16 15 42 42 H 1.09002 * 109.47482 * 203.49886 * 23 22 15 43 43 H 1.09003 * 109.47558 * 323.49713 * 23 22 15 44 44 H 1.08993 * 115.55099 * 34.80211 * 24 23 22 45 45 H 1.09000 * 117.49934 * 0.02562 * 25 24 23 46 46 H 1.09004 * 117.49719 * 145.01834 * 25 24 23 47 47 H 1.08998 * 117.49863 * 252.51025 * 26 25 24 48 48 H 1.09008 * 117.49789 * 107.48984 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6993 -0.2393 -2.4828 7 7 0.9428 0.8298 -2.6034 8 14 2.3213 -1.1203 -4.0080 9 1 3.1463 -2.2870 -3.6039 10 1 1.1660 -1.5865 -4.8161 11 1 3.1466 -0.1873 -4.8166 12 6 2.0324 -0.7104 1.2304 13 7 2.8162 -1.7509 1.2554 14 7 3.0470 -2.0998 2.4707 15 6 2.4180 -1.2936 3.2931 16 7 2.4247 -1.3594 4.6772 17 6 3.7396 -0.9882 5.2154 18 6 4.7374 -2.0780 4.9491 19 6 4.4002 -3.2895 4.6262 20 6 2.9697 -3.7265 4.4779 21 6 2.0455 -2.7036 5.1435 22 7 1.7517 -0.3814 2.5275 23 6 0.9087 0.7206 2.9979 24 6 1.7886 1.9225 3.3475 25 6 1.9089 2.3042 4.8242 26 6 1.0917 3.1795 3.8720 27 1 -0.3633 0.7612 0.6903 28 1 -0.3633 0.2171 -1.0045 29 1 -0.3633 -0.9785 0.3141 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 0.7083 1.1609 -3.4844 34 1 4.0766 -0.0664 4.7411 35 1 3.6577 -0.8290 6.2905 36 1 5.7883 -1.8423 5.0295 37 1 5.1818 -4.0153 4.4572 38 1 2.8363 -4.6985 4.9528 39 1 2.7227 -3.8033 3.4190 40 1 2.1557 -2.7603 6.2264 41 1 1.0115 -2.9092 4.8663 42 1 0.2059 1.0009 2.2133 43 1 0.3575 0.4041 3.8834 44 1 2.6682 2.0600 2.7186 45 1 1.3614 1.6988 5.5467 46 1 2.8678 2.6928 5.1671 47 1 1.5130 4.1439 3.5884 48 1 0.0062 3.1502 3.9679 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346611305.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:14 Heat of formation + Delta-G solvation = 134.185487 kcal Electronic energy + Delta-G solvation = -28520.835495 eV Core-core repulsion = 24999.745908 eV Total energy + Delta-G solvation = -3521.089588 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.87813 -40.27577 -38.68323 -37.40052 -35.17987 -33.88840 -32.92972 -31.87056 -29.94375 -28.57295 -27.73971 -27.17961 -25.67397 -24.31438 -23.59400 -23.15416 -22.24990 -21.75643 -20.69301 -19.45188 -18.00353 -17.60889 -17.36472 -17.18543 -16.76166 -16.09952 -15.90234 -15.60118 -15.28293 -15.06064 -14.78666 -14.69475 -14.09601 -13.94410 -13.58216 -13.49625 -13.29220 -13.07591 -12.99908 -12.92742 -12.77923 -12.59784 -12.49935 -12.32256 -12.18900 -11.98558 -11.87278 -11.80878 -11.65798 -11.35253 -11.29751 -10.90379 -10.79218 -10.64058 -10.37608 -9.88886 -9.74253 -9.54832 -8.04533 -6.15587 0.98850 1.40504 1.40628 1.44035 1.48284 1.58305 2.08759 2.47851 2.76864 2.99773 3.20884 3.69833 3.77390 3.84807 3.92383 4.03742 4.05625 4.07626 4.17646 4.24339 4.31880 4.48718 4.55716 4.58214 4.61245 4.64295 4.77151 4.78872 4.83956 4.85409 4.89224 4.93806 5.00981 5.05565 5.06792 5.20530 5.24930 5.28890 5.32547 5.34873 5.48313 5.64386 5.69938 5.75454 5.87029 5.99223 6.05846 6.11323 6.38636 6.50200 6.88567 7.50083 8.06683 8.96390 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.013501 B = 0.005278 C = 0.004138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.461885 B = 5304.158135 C = 6764.483554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.144 3.856 3 C -0.118 4.118 4 C -0.511 4.511 5 H 0.048 0.952 6 C 0.029 3.971 7 N -0.900 5.900 8 Si 0.945 3.055 9 H -0.284 1.284 10 H -0.276 1.276 11 H -0.278 1.278 12 C 0.224 3.776 13 N -0.343 5.343 14 N -0.332 5.332 15 C 0.325 3.675 16 N -0.442 5.442 17 C 0.100 3.900 18 C -0.212 4.212 19 C -0.122 4.122 20 C -0.132 4.132 21 C 0.064 3.936 22 N -0.460 5.460 23 C 0.139 3.861 24 C -0.192 4.192 25 C -0.150 4.150 26 C -0.155 4.155 27 H 0.047 0.953 28 H 0.077 0.923 29 H 0.016 0.984 30 H 0.008 0.992 31 H 0.077 0.923 32 H 0.047 0.953 33 H 0.263 0.737 34 H 0.068 0.932 35 H 0.130 0.870 36 H 0.111 0.889 37 H 0.101 0.899 38 H 0.090 0.910 39 H 0.070 0.930 40 H 0.121 0.879 41 H 0.076 0.924 42 H 0.097 0.903 43 H 0.111 0.889 44 H 0.079 0.921 45 H 0.111 0.889 46 H 0.098 0.902 47 H 0.102 0.898 48 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.029 2.370 20.083 20.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.141 3.859 3 C -0.177 4.177 4 C -0.550 4.550 5 H 0.067 0.933 6 C -0.170 4.170 7 N -0.539 5.539 8 Si 0.772 3.228 9 H -0.209 1.209 10 H -0.202 1.202 11 H -0.204 1.204 12 C -0.044 4.044 13 N -0.181 5.181 14 N -0.175 5.175 15 C -0.032 4.032 16 N -0.166 5.166 17 C -0.026 4.026 18 C -0.232 4.232 19 C -0.141 4.141 20 C -0.170 4.170 21 C -0.063 4.063 22 N -0.152 5.152 23 C 0.017 3.983 24 C -0.211 4.211 25 C -0.187 4.187 26 C -0.193 4.193 27 H 0.065 0.935 28 H 0.096 0.904 29 H 0.035 0.965 30 H 0.028 0.972 31 H 0.096 0.904 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.086 0.914 35 H 0.148 0.852 36 H 0.129 0.871 37 H 0.120 0.880 38 H 0.108 0.892 39 H 0.088 0.912 40 H 0.139 0.861 41 H 0.094 0.906 42 H 0.115 0.885 43 H 0.129 0.871 44 H 0.097 0.903 45 H 0.130 0.870 46 H 0.116 0.884 47 H 0.120 0.880 48 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -0.607 1.698 19.654 19.737 hybrid contribution 0.556 -0.212 -1.400 1.521 sum -0.050 1.485 18.254 18.314 Atomic orbital electron populations 1.21796 0.95721 0.97468 1.02944 1.16785 0.92912 0.91663 0.84577 1.21774 0.97479 0.96695 1.01726 1.21225 1.31111 1.12172 0.90469 0.93340 1.25351 0.95316 0.95733 1.00568 1.69871 1.37118 1.23173 1.23781 0.85708 0.78239 0.78633 0.80254 1.20947 1.20199 1.20425 1.25746 0.97140 0.95361 0.86183 1.74029 1.17142 1.13557 1.13391 1.74652 1.22163 1.24248 0.96469 1.22593 0.97426 0.91416 0.91729 1.59535 1.29342 1.29068 0.98683 1.21115 0.83729 0.95983 1.01819 1.22703 1.00541 0.95519 1.04405 1.22001 0.97321 0.97130 0.97637 1.21302 0.93428 1.00177 1.02121 1.22389 0.98677 0.83888 1.01324 1.46400 1.38106 1.25004 1.05677 1.21717 0.91579 0.83281 1.01699 1.22376 1.02102 0.96813 0.99780 1.23079 1.02298 1.02459 0.90872 1.23045 1.00238 0.93702 1.02279 0.93450 0.90445 0.96529 0.97236 0.90440 0.93402 0.92757 0.91352 0.85234 0.87116 0.88047 0.89159 0.91186 0.86066 0.90579 0.88461 0.87111 0.90256 0.87033 0.88371 0.87973 0.87040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.51 8.07 71.98 0.58 -4.92 16 2 C 0.14 7.03 0.49 -53.67 -0.03 7.00 16 3 C -0.12 -5.47 8.09 71.98 0.58 -4.89 16 4 C -0.51 -28.81 7.91 25.60 0.20 -28.60 16 5 H 0.05 2.96 6.94 -2.91 -0.02 2.94 16 6 C 0.03 1.60 5.05 84.66 0.43 2.03 16 7 N -0.90 -48.07 9.39 21.45 0.20 -47.87 16 8 Si 0.94 44.77 29.54 68.60 2.03 46.80 16 9 H -0.28 -14.00 7.11 99.48 0.71 -13.29 16 10 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 11 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 12 C 0.22 10.49 6.25 137.64 0.86 11.35 16 13 N -0.34 -17.58 10.99 -49.54 -0.54 -18.12 16 14 N -0.33 -14.54 7.79 -58.01 -0.45 -14.99 16 15 C 0.32 11.68 6.21 260.11 1.61 13.29 16 16 N -0.44 -11.51 5.06 -710.47 -3.60 -15.11 16 17 C 0.10 2.27 5.91 85.39 0.51 2.77 16 18 C -0.21 -5.36 9.39 26.68 0.25 -5.11 16 19 C -0.12 -3.29 8.96 26.73 0.24 -3.05 16 20 C -0.13 -3.50 5.50 29.75 0.16 -3.34 16 21 C 0.06 1.44 6.02 86.27 0.52 1.96 16 22 N -0.46 -17.08 2.81 -514.87 -1.45 -18.53 16 23 C 0.14 3.94 5.52 86.38 0.48 4.42 16 24 C -0.19 -4.77 4.84 -10.79 -0.05 -4.82 16 25 C -0.15 -2.64 10.18 30.59 0.31 -2.33 16 26 C -0.16 -2.79 10.25 30.59 0.31 -2.48 16 27 H 0.05 1.82 5.58 -2.39 -0.01 1.81 16 28 H 0.08 3.89 5.81 -2.39 -0.01 3.88 16 29 H 0.02 0.72 8.01 -2.39 -0.02 0.71 16 30 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.08 3.87 6.07 -2.39 -0.01 3.86 16 32 H 0.05 1.87 4.80 -2.39 -0.01 1.86 16 33 H 0.26 13.40 8.31 -92.71 -0.77 12.63 16 34 H 0.07 1.73 8.02 -2.38 -0.02 1.72 16 35 H 0.13 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.11 2.58 8.06 -2.91 -0.02 2.56 16 37 H 0.10 2.63 8.06 -2.91 -0.02 2.61 16 38 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.07 2.51 5.82 -2.39 -0.01 2.49 16 40 H 0.12 1.88 8.08 -2.39 -0.02 1.86 16 41 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.10 2.91 4.59 -2.39 -0.01 2.90 16 43 H 0.11 2.60 7.90 -2.39 -0.02 2.58 16 44 H 0.08 2.49 7.53 -2.39 -0.02 2.47 16 45 H 0.11 1.70 8.05 -2.39 -0.02 1.68 16 46 H 0.10 1.60 8.14 -2.38 -0.02 1.58 16 47 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 48 H 0.11 1.69 8.14 -2.38 -0.02 1.67 16 Total: -1.00 -66.49 364.15 4.11 -62.37 By element: Atomic # 1 Polarization: 21.22 SS G_CDS: 0.96 Total: 22.17 kcal Atomic # 6 Polarization: -23.70 SS G_CDS: 6.97 Total: -16.73 kcal Atomic # 7 Polarization: -108.78 SS G_CDS: -5.84 Total: -114.61 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -66.49 4.11 -62.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346611305.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 196.560 kcal (2) G-P(sol) polarization free energy of solvation -66.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds