Wall clock time and date at job start Tue Mar 31 2020 11:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 H 1.08996 * 109.46886 * 134.88996 * 3 2 1 5 5 C 1.53001 * 109.46940 * 254.87989 * 3 2 1 6 6 N 1.46896 * 109.47836 * 14.88275 * 3 2 1 7 7 C 1.46903 * 110.99671 * 298.95683 * 6 3 2 8 8 C 1.38571 * 111.00409 * 174.99886 * 6 3 2 9 9 N 1.31222 * 126.47244 * 359.97438 * 8 6 3 10 10 N 1.28529 * 109.86099 * 179.72574 * 9 8 6 11 11 C 1.30295 * 110.05286 * 0.45709 * 10 9 8 12 12 C 1.50697 * 126.34855 * 179.81564 * 11 10 9 13 13 C 1.52997 * 109.47466 * 269.69037 * 12 11 10 14 14 C 1.53000 * 109.47060 * 180.02562 * 13 12 11 15 15 C 1.50703 * 109.46912 * 179.97438 * 14 13 12 16 16 H 1.08001 * 119.99776 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00001 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00114 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99955 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46999 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46979 * 120.00420 * 19 17 15 22 22 H 1.48498 * 109.46942 * 240.00334 * 19 17 15 23 23 N 1.36454 * 126.47392 * 179.97438 * 8 6 3 24 24 C 1.46500 * 127.13854 * 0.02562 * 23 8 6 25 25 C 1.52997 * 109.46909 * 270.02464 * 24 23 8 26 26 C 1.52997 * 117.49897 * 243.61744 * 25 24 23 27 27 C 1.52990 * 60.00472 * 252.51334 * 26 25 24 28 28 H 4.18730 * 15.03747 * 0.02562 * 4 2 1 29 29 H 1.09004 * 109.47414 * 300.00404 * 5 3 2 30 30 H 1.09002 * 109.47161 * 60.00624 * 5 3 2 31 31 H 1.09000 * 109.47425 * 180.02562 * 5 3 2 32 32 H 1.08992 * 109.46848 * 296.03899 * 7 6 3 33 33 H 1.08999 * 109.47040 * 56.04542 * 7 6 3 34 34 H 1.09004 * 109.46686 * 176.04353 * 7 6 3 35 35 H 1.09002 * 109.47120 * 149.68790 * 12 11 10 36 36 H 1.08998 * 109.46862 * 29.69592 * 12 11 10 37 37 H 1.09002 * 109.47153 * 59.99773 * 13 12 11 38 38 H 1.09001 * 109.46832 * 299.99964 * 13 12 11 39 39 H 1.09001 * 109.47194 * 299.99650 * 14 13 12 40 40 H 1.08992 * 109.47399 * 59.99823 * 14 13 12 41 41 H 0.97000 * 120.00354 * 180.02562 * 18 17 15 42 42 H 1.09002 * 109.46797 * 30.02326 * 24 23 8 43 43 H 1.08999 * 109.47165 * 150.02299 * 24 23 8 44 44 H 1.09002 * 115.55292 * 29.32712 * 25 24 23 45 45 H 1.09002 * 117.49602 * 0.02562 * 26 25 24 46 46 H 1.09001 * 117.49974 * 145.01662 * 26 25 24 47 47 H 1.09001 * 117.50031 * 252.51652 * 27 26 25 48 48 H 1.09002 * 117.50003 * 107.48320 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0089 0.7261 -0.7280 5 6 3.1558 0.3772 1.3926 6 7 3.1364 -1.3376 -0.3557 7 6 2.6864 -2.3396 0.6198 8 6 4.5170 -1.3452 -0.4746 9 7 5.3204 -0.3219 -0.3030 10 7 6.5388 -0.6879 -0.4861 11 6 6.5839 -1.9535 -0.7924 12 6 7.8241 -2.7577 -1.0860 13 6 8.1251 -2.7020 -2.5850 14 6 9.3839 -3.5190 -2.8832 15 6 9.6800 -3.4646 -4.3598 16 1 9.0351 -2.9030 -5.0195 17 6 10.7747 -4.1308 -4.8684 18 7 11.5603 -4.8142 -4.0650 19 14 11.1414 -4.0640 -6.6989 20 1 10.1139 -3.2356 -7.3795 21 1 12.4825 -3.4634 -6.9134 22 1 11.1195 -5.4392 -7.2586 23 7 5.2978 -2.4182 -0.7922 24 6 4.8511 -3.7845 -1.0748 25 6 4.8131 -4.5881 0.2265 26 6 5.7594 -5.7844 0.3459 27 6 4.2579 -6.0124 0.1613 28 1 -1.0500 -0.0002 0.0009 29 1 2.7919 1.3702 1.6566 30 1 2.7928 -0.3482 2.1208 31 1 4.2458 0.3781 1.3926 32 1 3.1223 -2.1194 1.5941 33 1 1.5992 -2.3122 0.6934 34 1 3.0038 -3.3306 0.2953 35 1 7.6651 -3.7934 -0.7856 36 1 8.6656 -2.3435 -0.5307 37 1 8.2841 -1.6663 -2.8854 38 1 7.2835 -3.1162 -3.1402 39 1 10.2256 -3.1052 -2.3279 40 1 9.2245 -4.5546 -2.5829 41 1 12.3307 -5.2826 -4.4227 42 1 3.8539 -3.7570 -1.5141 43 1 5.5428 -4.2558 -1.7730 44 1 4.6143 -4.0113 1.1297 45 1 6.4093 -5.9986 -0.5026 46 1 6.1836 -5.9946 1.3277 47 1 3.6940 -6.3725 1.0218 48 1 3.9196 -6.3767 -0.8087 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001348074001.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:54 Heat of formation + Delta-G solvation = 164.623458 kcal Electronic energy + Delta-G solvation = -26685.552075 eV Core-core repulsion = 23165.782377 eV Total energy + Delta-G solvation = -3519.769698 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.96182 -38.82796 -38.06913 -34.99305 -34.39360 -33.29509 -32.31031 -30.27902 -29.81523 -28.21696 -27.12923 -26.14936 -23.98818 -23.59612 -22.69308 -21.78704 -21.08249 -20.27599 -20.04740 -18.14424 -17.54853 -16.58480 -16.31741 -16.26538 -15.57376 -15.07862 -15.02209 -14.56039 -14.48544 -14.18224 -13.90722 -13.89042 -13.25366 -13.18056 -12.48912 -12.44118 -12.16570 -12.10845 -11.99349 -11.79060 -11.70801 -11.53030 -11.26378 -10.94765 -10.86925 -10.79907 -10.78369 -10.66929 -10.53529 -10.39625 -10.21421 -10.06904 -9.79066 -9.69522 -9.40512 -9.10985 -8.36884 -8.14184 -6.01941 -4.03934 1.81619 2.04802 2.55507 2.60728 3.00529 3.30448 3.38359 3.40257 3.42959 3.60288 4.00098 4.29574 4.41349 4.45183 4.57352 4.58937 4.74347 4.79991 4.85376 4.87852 4.92391 5.08479 5.15441 5.24342 5.31740 5.34424 5.36515 5.43692 5.54574 5.60299 5.64721 5.70092 5.76227 5.84621 5.88293 5.90668 6.03494 6.08058 6.12194 6.41300 6.62790 6.64561 6.76821 7.03113 7.17356 7.30136 7.64155 7.76987 7.97585 8.40263 8.94540 9.02910 9.60452 11.09322 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.015778 B = 0.003024 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.150314 B = 9255.540714 C =10080.722916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.175 4.175 3 C 0.208 3.792 4 H 0.118 0.882 5 C -0.183 4.183 6 N -0.445 5.445 7 C 0.006 3.994 8 C 0.345 3.655 9 N -0.321 5.321 10 N -0.290 5.290 11 C 0.208 3.792 12 C -0.035 4.035 13 C -0.103 4.103 14 C 0.023 3.977 15 C -0.519 4.519 16 H 0.055 0.945 17 C 0.057 3.943 18 N -0.895 5.895 19 Si 0.890 3.110 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.284 1.284 23 N -0.473 5.473 24 C 0.136 3.864 25 C -0.185 4.185 26 C -0.169 4.169 27 C -0.167 4.167 28 H 0.220 0.780 29 H 0.070 0.930 30 H 0.055 0.945 31 H 0.093 0.907 32 H 0.044 0.956 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.096 0.904 37 H 0.057 0.943 38 H 0.044 0.956 39 H 0.020 0.980 40 H 0.016 0.984 41 H 0.260 0.740 42 H 0.101 0.899 43 H 0.106 0.894 44 H 0.108 0.892 45 H 0.106 0.894 46 H 0.098 0.902 47 H 0.098 0.902 48 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.691 0.813 12.827 25.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.176 4.176 3 C 0.101 3.899 4 H 0.136 0.864 5 C -0.241 4.241 6 N -0.167 5.167 7 C -0.141 4.141 8 C -0.012 4.012 9 N -0.165 5.165 10 N -0.127 5.127 11 C -0.060 4.060 12 C -0.075 4.075 13 C -0.142 4.142 14 C -0.014 4.014 15 C -0.557 4.557 16 H 0.073 0.927 17 C -0.144 4.144 18 N -0.535 5.535 19 Si 0.718 3.282 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.211 1.211 23 N -0.168 5.168 24 C 0.013 3.987 25 C -0.204 4.204 26 C -0.206 4.206 27 C -0.204 4.204 28 H 0.236 0.764 29 H 0.089 0.911 30 H 0.074 0.926 31 H 0.112 0.888 32 H 0.063 0.937 33 H 0.103 0.897 34 H 0.106 0.894 35 H 0.096 0.904 36 H 0.115 0.885 37 H 0.076 0.924 38 H 0.063 0.937 39 H 0.038 0.962 40 H 0.035 0.965 41 H 0.070 0.930 42 H 0.119 0.881 43 H 0.124 0.876 44 H 0.126 0.874 45 H 0.124 0.876 46 H 0.116 0.884 47 H 0.116 0.884 48 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -21.276 1.989 12.664 24.839 hybrid contribution -0.245 -1.171 -0.673 1.373 sum -21.520 0.819 11.991 24.649 Atomic orbital electron populations 1.24885 0.95737 0.98956 1.01133 1.22586 0.93606 1.01239 1.00142 1.18441 0.84201 0.88465 0.98754 0.86438 1.22492 1.04410 1.02243 0.94974 1.58819 1.02480 1.08015 1.47391 1.22922 1.02207 0.95492 0.93477 1.22353 0.89650 0.85686 1.03479 1.74530 0.96359 1.22907 1.22737 1.74011 1.11747 1.08900 1.18083 1.25232 0.85862 0.92739 1.02125 1.20350 0.89462 0.97168 1.00528 1.21658 1.00522 1.01756 0.90217 1.19096 0.91066 0.94544 0.96672 1.21262 1.10399 1.30832 0.93256 0.92686 1.25004 0.96185 0.95389 0.97803 1.69963 1.15925 1.32929 1.34642 0.86563 0.78288 0.77707 0.85633 1.19737 1.20956 1.21050 1.46120 1.06884 1.09723 1.54081 1.21542 1.02607 0.78139 0.96407 1.22706 1.07878 0.91022 0.98817 1.23163 0.92876 1.00335 1.04227 1.22982 0.97197 0.96516 1.03732 0.76362 0.91118 0.92594 0.88806 0.93733 0.89656 0.89417 0.90368 0.88534 0.92409 0.93676 0.96165 0.96547 0.93049 0.88124 0.87553 0.87352 0.87560 0.88365 0.88367 0.88136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.53 19.25 29.55 0.57 -0.97 16 2 C -0.18 -1.76 11.33 -37.12 -0.42 -2.18 16 3 C 0.21 2.33 2.50 -70.50 -0.18 2.16 16 4 H 0.12 1.45 7.95 -51.93 -0.41 1.04 16 5 C -0.18 -1.91 8.44 37.16 0.31 -1.60 16 6 N -0.44 -5.27 4.79 -177.99 -0.85 -6.12 16 7 C 0.01 0.06 7.98 60.07 0.48 0.53 16 8 C 0.34 4.99 6.75 -318.88 -2.15 2.84 16 9 N -0.32 -5.45 9.32 30.31 0.28 -5.17 16 10 N -0.29 -5.39 12.18 32.99 0.40 -4.99 16 11 C 0.21 3.45 7.32 -154.01 -1.13 2.33 16 12 C -0.04 -0.59 5.42 -27.89 -0.15 -0.74 16 13 C -0.10 -2.07 5.13 -26.73 -0.14 -2.20 16 14 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 15 C -0.52 -14.49 9.11 -34.44 -0.31 -14.80 16 16 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 18 N -0.90 -26.43 13.29 55.43 0.74 -25.69 16 19 Si 0.89 21.56 29.54 -169.99 -5.02 16.53 16 20 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 N -0.47 -6.63 2.81 -114.09 -0.32 -6.95 16 24 C 0.14 1.46 5.27 -4.04 -0.02 1.44 16 25 C -0.19 -1.65 4.29 -90.62 -0.39 -2.04 16 26 C -0.17 -1.49 10.18 -26.74 -0.27 -1.76 16 27 C -0.17 -1.19 10.25 -26.73 -0.27 -1.46 16 28 H 0.22 0.97 7.80 -54.09 -0.42 0.55 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.53 6.47 -51.93 -0.34 0.19 16 31 H 0.09 1.20 5.88 -51.93 -0.31 0.89 16 32 H 0.04 0.41 6.51 -51.93 -0.34 0.07 16 33 H 0.08 0.70 7.00 -51.93 -0.36 0.33 16 34 H 0.09 0.74 3.77 -51.93 -0.20 0.54 16 35 H 0.08 1.15 7.92 -51.93 -0.41 0.74 16 36 H 0.10 1.61 8.14 -51.93 -0.42 1.19 16 37 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 38 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 42 H 0.10 0.97 7.57 -51.93 -0.39 0.58 16 43 H 0.11 1.19 7.61 -51.93 -0.40 0.80 16 44 H 0.11 1.02 7.07 -51.93 -0.37 0.65 16 45 H 0.11 1.03 8.03 -51.93 -0.42 0.61 16 46 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 389.82 15.07 5.87 5.87 Total: -1.00 -32.39 389.82 -10.91 -43.30 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -7.70 Total: -0.29 kcal Atomic # 6 Polarization: -12.18 SS G_CDS: -4.31 Total: -16.49 kcal Atomic # 7 Polarization: -49.18 SS G_CDS: 0.25 Total: -48.93 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.39 -10.91 -43.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348074001.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 207.924 kcal (2) G-P(sol) polarization free energy of solvation -32.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 175.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 164.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds