Wall clock time and date at job start Tue Mar 31 2020 11:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 H 1.08996 * 109.46886 * 134.88996 * 3 2 1 5 5 C 1.53001 * 109.46940 * 254.87989 * 3 2 1 6 6 N 1.46896 * 109.47836 * 14.88275 * 3 2 1 7 7 C 1.46903 * 110.99671 * 298.95683 * 6 3 2 8 8 C 1.38571 * 111.00409 * 174.99886 * 6 3 2 9 9 N 1.31222 * 126.47244 * 359.97438 * 8 6 3 10 10 N 1.28529 * 109.86099 * 179.72574 * 9 8 6 11 11 C 1.30295 * 110.05286 * 0.45709 * 10 9 8 12 12 C 1.50697 * 126.34855 * 179.81564 * 11 10 9 13 13 C 1.52997 * 109.47466 * 269.69037 * 12 11 10 14 14 C 1.53000 * 109.47060 * 180.02562 * 13 12 11 15 15 C 1.50703 * 109.46912 * 179.97438 * 14 13 12 16 16 H 1.08001 * 119.99776 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00001 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00114 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99955 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46999 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46979 * 120.00420 * 19 17 15 22 22 H 1.48498 * 109.46942 * 240.00334 * 19 17 15 23 23 N 1.36454 * 126.47392 * 179.97438 * 8 6 3 24 24 C 1.46500 * 127.13854 * 0.02562 * 23 8 6 25 25 C 1.52997 * 109.46909 * 270.02464 * 24 23 8 26 26 C 1.52997 * 117.49897 * 243.61744 * 25 24 23 27 27 C 1.52990 * 60.00472 * 252.51334 * 26 25 24 28 28 H 4.18730 * 15.03747 * 0.02562 * 4 2 1 29 29 H 1.09004 * 109.47414 * 300.00404 * 5 3 2 30 30 H 1.09002 * 109.47161 * 60.00624 * 5 3 2 31 31 H 1.09000 * 109.47425 * 180.02562 * 5 3 2 32 32 H 1.08992 * 109.46848 * 296.03899 * 7 6 3 33 33 H 1.08999 * 109.47040 * 56.04542 * 7 6 3 34 34 H 1.09004 * 109.46686 * 176.04353 * 7 6 3 35 35 H 1.09002 * 109.47120 * 149.68790 * 12 11 10 36 36 H 1.08998 * 109.46862 * 29.69592 * 12 11 10 37 37 H 1.09002 * 109.47153 * 59.99773 * 13 12 11 38 38 H 1.09001 * 109.46832 * 299.99964 * 13 12 11 39 39 H 1.09001 * 109.47194 * 299.99650 * 14 13 12 40 40 H 1.08992 * 109.47399 * 59.99823 * 14 13 12 41 41 H 0.97000 * 120.00354 * 180.02562 * 18 17 15 42 42 H 1.09002 * 109.46797 * 30.02326 * 24 23 8 43 43 H 1.08999 * 109.47165 * 150.02299 * 24 23 8 44 44 H 1.09002 * 115.55292 * 29.32712 * 25 24 23 45 45 H 1.09002 * 117.49602 * 0.02562 * 26 25 24 46 46 H 1.09001 * 117.49974 * 145.01662 * 26 25 24 47 47 H 1.09001 * 117.50031 * 252.51652 * 27 26 25 48 48 H 1.09002 * 117.50003 * 107.48320 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0089 0.7261 -0.7280 5 6 3.1558 0.3772 1.3926 6 7 3.1364 -1.3376 -0.3557 7 6 2.6864 -2.3396 0.6198 8 6 4.5170 -1.3452 -0.4746 9 7 5.3204 -0.3219 -0.3030 10 7 6.5388 -0.6879 -0.4861 11 6 6.5839 -1.9535 -0.7924 12 6 7.8241 -2.7577 -1.0860 13 6 8.1251 -2.7020 -2.5850 14 6 9.3839 -3.5190 -2.8832 15 6 9.6800 -3.4646 -4.3598 16 1 9.0351 -2.9030 -5.0195 17 6 10.7747 -4.1308 -4.8684 18 7 11.5603 -4.8142 -4.0650 19 14 11.1414 -4.0640 -6.6989 20 1 10.1139 -3.2356 -7.3795 21 1 12.4825 -3.4634 -6.9134 22 1 11.1195 -5.4392 -7.2586 23 7 5.2978 -2.4182 -0.7922 24 6 4.8511 -3.7845 -1.0748 25 6 4.8131 -4.5881 0.2265 26 6 5.7594 -5.7844 0.3459 27 6 4.2579 -6.0124 0.1613 28 1 -1.0500 -0.0002 0.0009 29 1 2.7919 1.3702 1.6566 30 1 2.7928 -0.3482 2.1208 31 1 4.2458 0.3781 1.3926 32 1 3.1223 -2.1194 1.5941 33 1 1.5992 -2.3122 0.6934 34 1 3.0038 -3.3306 0.2953 35 1 7.6651 -3.7934 -0.7856 36 1 8.6656 -2.3435 -0.5307 37 1 8.2841 -1.6663 -2.8854 38 1 7.2835 -3.1162 -3.1402 39 1 10.2256 -3.1052 -2.3279 40 1 9.2245 -4.5546 -2.5829 41 1 12.3307 -5.2826 -4.4227 42 1 3.8539 -3.7570 -1.5141 43 1 5.5428 -4.2558 -1.7730 44 1 4.6143 -4.0113 1.1297 45 1 6.4093 -5.9986 -0.5026 46 1 6.1836 -5.9946 1.3277 47 1 3.6940 -6.3725 1.0218 48 1 3.9196 -6.3767 -0.8087 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001348074001.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:53 Heat of formation + Delta-G solvation = 149.558993 kcal Electronic energy + Delta-G solvation = -26686.205319 eV Core-core repulsion = 23165.782377 eV Total energy + Delta-G solvation = -3520.422942 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.14568 -39.74714 -38.82708 -36.64232 -35.47710 -34.59072 -33.80728 -31.38377 -30.99781 -29.34040 -28.51333 -27.13783 -25.58966 -24.73139 -23.33870 -22.76340 -22.43461 -21.73011 -21.10543 -18.89564 -18.64927 -18.25565 -17.61979 -17.33195 -16.55761 -16.39822 -16.02443 -15.85182 -15.56889 -15.32187 -15.21927 -14.88165 -14.37596 -14.13678 -13.95507 -13.80635 -13.37517 -13.25776 -13.06349 -12.91477 -12.71912 -12.63667 -12.54255 -12.47182 -12.36691 -12.34313 -11.81920 -11.61604 -11.56276 -11.49726 -11.38410 -11.22060 -11.16214 -11.09812 -11.00808 -10.69847 -10.53899 -9.30095 -8.19068 -6.28821 0.69549 1.03383 1.39444 1.41126 1.53363 1.73032 1.81538 1.87656 2.41755 2.67293 2.76449 3.14500 3.27763 3.34249 3.59348 3.63468 3.75269 3.85092 3.95875 4.03334 4.07858 4.10604 4.14078 4.31886 4.34132 4.37277 4.47847 4.49742 4.60168 4.69805 4.77501 4.79414 4.80802 4.94262 4.98730 5.03627 5.04942 5.09025 5.11683 5.18130 5.19842 5.24630 5.45389 5.52474 5.57166 5.75014 5.86503 6.10072 6.26893 6.63890 6.86936 7.39904 7.70906 8.92476 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.015778 B = 0.003024 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.150314 B = 9255.540714 C =10080.722916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.221 4.221 3 C 0.209 3.791 4 H 0.096 0.904 5 C -0.174 4.174 6 N -0.445 5.445 7 C 0.008 3.992 8 C 0.358 3.642 9 N -0.348 5.348 10 N -0.324 5.324 11 C 0.199 3.801 12 C -0.021 4.021 13 C -0.085 4.085 14 C 0.029 3.971 15 C -0.542 4.542 16 H 0.053 0.947 17 C 0.004 3.996 18 N -0.928 5.928 19 Si 0.958 3.042 20 H -0.267 1.267 21 H -0.279 1.279 22 H -0.275 1.275 23 N -0.469 5.469 24 C 0.131 3.869 25 C -0.188 4.188 26 C -0.183 4.183 27 C -0.142 4.142 28 H 0.255 0.745 29 H 0.080 0.920 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.044 0.956 33 H 0.101 0.899 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.092 0.908 37 H 0.040 0.960 38 H 0.050 0.950 39 H -0.004 1.004 40 H 0.007 0.993 41 H 0.264 0.736 42 H 0.116 0.884 43 H 0.101 0.899 44 H 0.106 0.894 45 H 0.094 0.906 46 H 0.101 0.899 47 H 0.116 0.884 48 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.548 -0.192 12.757 27.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.222 4.222 3 C 0.103 3.897 4 H 0.114 0.886 5 C -0.233 4.233 6 N -0.168 5.168 7 C -0.138 4.138 8 C 0.000 4.000 9 N -0.193 5.193 10 N -0.162 5.162 11 C -0.070 4.070 12 C -0.061 4.061 13 C -0.123 4.123 14 C -0.008 4.008 15 C -0.580 4.580 16 H 0.071 0.929 17 C -0.194 4.194 18 N -0.569 5.569 19 Si 0.783 3.217 20 H -0.191 1.191 21 H -0.205 1.205 22 H -0.200 1.200 23 N -0.163 5.163 24 C 0.010 3.990 25 C -0.207 4.207 26 C -0.220 4.220 27 C -0.179 4.179 28 H 0.272 0.728 29 H 0.098 0.902 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.062 0.938 33 H 0.120 0.880 34 H 0.115 0.885 35 H 0.116 0.884 36 H 0.110 0.890 37 H 0.059 0.941 38 H 0.069 0.931 39 H 0.015 0.985 40 H 0.025 0.975 41 H 0.073 0.927 42 H 0.134 0.866 43 H 0.119 0.881 44 H 0.124 0.876 45 H 0.112 0.888 46 H 0.119 0.881 47 H 0.134 0.866 48 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -24.156 0.974 12.601 27.263 hybrid contribution 0.521 -0.856 -0.633 1.185 sum -23.635 0.119 11.967 26.493 Atomic orbital electron populations 1.25729 0.96378 0.96368 0.98566 1.22478 0.93570 1.03629 1.02514 1.18293 0.85499 0.87618 0.98324 0.88619 1.22380 1.02615 1.03199 0.95059 1.58954 1.00459 1.09133 1.48278 1.23008 1.03122 0.94992 0.92713 1.22648 0.90589 0.85111 1.01613 1.74475 0.96181 1.24204 1.24411 1.73923 1.13036 1.10097 1.19162 1.24972 0.86696 0.92415 1.02930 1.20093 0.89754 0.98420 0.97817 1.21349 0.98458 0.99649 0.92886 1.18964 0.92279 0.94475 0.95061 1.21667 1.10704 1.30855 0.94774 0.92903 1.25864 0.95985 0.94943 1.02576 1.70070 1.16441 1.33629 1.36736 0.85501 0.78128 0.78111 0.79939 1.19107 1.20513 1.20036 1.46228 1.05891 1.10779 1.53394 1.21802 1.03053 0.76619 0.97554 1.22567 1.09060 0.91445 0.97608 1.23185 0.94042 1.00806 1.03989 1.23092 0.95713 0.94167 1.04972 0.72849 0.90154 0.91482 0.91375 0.93775 0.88030 0.88451 0.88422 0.88962 0.94113 0.93111 0.98527 0.97503 0.92727 0.86630 0.88089 0.87580 0.88770 0.88060 0.86551 0.87223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 19.25 74.32 1.43 -0.54 16 2 C -0.22 -4.05 11.33 31.13 0.35 -3.69 16 3 C 0.21 4.62 2.50 43.11 0.11 4.73 16 4 H 0.10 2.47 7.95 -2.39 -0.02 2.45 16 5 C -0.17 -3.61 8.44 71.98 0.61 -3.00 16 6 N -0.45 -10.17 4.79 -717.02 -3.44 -13.61 16 7 C 0.01 0.13 7.98 127.69 1.02 1.14 16 8 C 0.36 10.37 6.75 260.11 1.76 12.13 16 9 N -0.35 -12.24 9.32 -58.01 -0.54 -12.78 16 10 N -0.32 -12.50 12.18 -49.54 -0.60 -13.11 16 11 C 0.20 6.73 7.32 137.64 1.01 7.74 16 12 C -0.02 -0.72 5.42 29.85 0.16 -0.56 16 13 C -0.08 -3.49 5.13 30.59 0.16 -3.33 16 14 C 0.03 1.50 4.97 29.85 0.15 1.65 16 15 C -0.54 -30.72 9.11 25.60 0.23 -30.49 16 16 H 0.05 2.95 7.74 -2.91 -0.02 2.92 16 17 C 0.00 0.25 5.46 84.66 0.46 0.71 16 18 N -0.93 -55.47 13.29 21.45 0.28 -55.19 16 19 Si 0.96 44.28 29.54 68.60 2.03 46.31 16 20 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 21 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 22 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 23 N -0.47 -13.03 2.81 -514.86 -1.44 -14.47 16 24 C 0.13 2.66 5.27 86.38 0.46 3.11 16 25 C -0.19 -3.02 4.29 -10.79 -0.05 -3.06 16 26 C -0.18 -2.98 10.18 30.59 0.31 -2.67 16 27 C -0.14 -1.64 10.25 30.59 0.31 -1.32 16 28 H 0.26 1.04 7.80 -4.42 -0.03 1.01 16 29 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.07 1.20 6.47 -2.39 -0.02 1.19 16 31 H 0.07 1.80 5.88 -2.39 -0.01 1.79 16 32 H 0.04 0.74 6.51 -2.39 -0.02 0.73 16 33 H 0.10 1.36 7.00 -2.39 -0.02 1.34 16 34 H 0.10 1.39 3.77 -2.39 -0.01 1.38 16 35 H 0.10 2.89 7.92 -2.39 -0.02 2.88 16 36 H 0.09 3.20 8.14 -2.39 -0.02 3.18 16 37 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 40 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 41 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 42 H 0.12 1.99 7.57 -2.39 -0.02 1.97 16 43 H 0.10 2.18 7.61 -2.39 -0.02 2.16 16 44 H 0.11 1.81 7.07 -2.39 -0.02 1.79 16 45 H 0.09 1.77 8.03 -2.39 -0.02 1.75 16 46 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 47 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 48 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -71.28 389.82 5.70 -65.58 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: 0.94 Total: 14.72 kcal Atomic # 6 Polarization: -25.93 SS G_CDS: 8.48 Total: -17.45 kcal Atomic # 7 Polarization: -103.41 SS G_CDS: -5.74 Total: -109.15 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -71.28 5.70 -65.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348074001.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 215.134 kcal (2) G-P(sol) polarization free energy of solvation -71.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 149.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds