Wall clock time and date at job start Tue Mar 31 2020 11:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47309 * 2 1 4 4 C 1.53004 * 109.46822 * 240.00111 * 2 1 3 5 5 C 1.50697 * 109.47086 * 65.00381 * 4 2 1 6 6 H 1.07999 * 120.00192 * 359.97438 * 5 4 2 7 7 C 1.37884 * 119.99617 * 179.97438 * 5 4 2 8 8 N 1.31514 * 119.99452 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 120.00013 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.47070 * 90.00421 * 9 7 5 11 11 H 1.48501 * 109.46879 * 209.99941 * 9 7 5 12 12 H 1.48496 * 109.47236 * 329.99757 * 9 7 5 13 13 C 1.50704 * 109.46954 * 120.00417 * 2 1 3 14 14 N 1.30290 * 126.34838 * 59.95689 * 13 2 1 15 15 N 1.28526 * 110.05360 * 179.76468 * 14 13 2 16 16 C 1.31216 * 109.85809 * 0.45300 * 15 14 13 17 17 N 1.38587 * 126.47164 * 179.82788 * 16 15 14 18 18 C 1.46842 * 111.00076 * 26.51580 * 17 16 15 19 19 C 1.50145 * 110.27601 * 287.54026 * 18 17 16 20 20 C 1.29826 * 123.28201 * 342.95187 * 19 18 17 21 21 C 1.50306 * 122.89604 * 0.34763 * 20 19 18 22 22 C 1.47141 * 111.01643 * 263.60958 * 17 16 15 23 23 N 1.36451 * 107.05693 * 359.55813 * 16 15 14 24 24 C 1.46494 * 127.14018 * 180.24172 * 23 16 15 25 25 C 1.53006 * 109.47059 * 93.81018 * 24 23 16 26 26 C 1.52998 * 117.49923 * 243.79366 * 25 24 23 27 27 C 1.53002 * 117.49568 * 175.16923 * 25 24 23 28 28 H 1.08998 * 109.46812 * 59.99886 * 1 2 3 29 29 H 1.08999 * 109.47309 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47129 * 299.99829 * 1 2 3 31 31 H 1.09010 * 109.46678 * 185.00418 * 4 2 1 32 32 H 1.08995 * 109.47313 * 304.99915 * 4 2 1 33 33 H 0.96999 * 119.99857 * 180.02562 * 8 7 5 34 34 H 1.09003 * 109.33308 * 167.29418 * 18 17 16 35 35 H 1.09001 * 109.33682 * 47.78731 * 18 17 16 36 36 H 1.07999 * 118.35765 * 162.93025 * 19 18 17 37 37 H 1.07997 * 118.55102 * 180.37518 * 20 19 18 38 38 H 1.09001 * 109.42937 * 103.59724 * 21 20 19 39 39 H 1.09002 * 109.42875 * 223.50381 * 21 20 19 40 40 H 1.08994 * 109.58158 * 294.85190 * 22 17 16 41 41 H 1.09000 * 109.63541 * 174.27592 * 22 17 16 42 42 H 1.09003 * 109.47510 * 213.80838 * 24 23 16 43 43 H 1.08999 * 109.47308 * 333.81188 * 24 23 16 44 44 H 1.08994 * 115.54698 * 29.50282 * 25 24 23 45 45 H 1.09003 * 117.49567 * 359.97438 * 26 25 24 46 46 H 1.09002 * 117.50190 * 145.02064 * 26 25 24 47 47 H 1.09005 * 117.49595 * 214.97593 * 27 25 24 48 48 H 1.08989 * 117.50300 * 0.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6413 0.0571 -2.4766 6 1 1.0800 0.9743 -2.3757 7 6 1.9933 -0.4017 -3.7283 8 7 1.6458 0.2779 -4.7993 9 14 2.9647 -1.9876 -3.9027 10 1 2.0263 -3.1326 -4.0196 11 1 3.8133 -1.9170 -5.1193 12 1 3.8268 -2.1740 -2.7081 13 6 2.0323 -0.7105 1.2305 14 7 1.7944 -1.9488 1.5583 15 7 2.3798 -2.2315 2.6671 16 6 3.0200 -1.1771 3.1145 17 7 3.7626 -1.0982 4.2820 18 6 4.2865 -2.4161 4.6625 19 6 3.1779 -3.2879 5.1775 20 6 2.0275 -2.8249 5.5618 21 6 1.6820 -1.3625 5.5237 22 6 2.9615 -0.5342 5.3798 23 7 2.8217 -0.1748 2.2101 24 6 3.3452 1.1919 2.2754 25 6 4.6596 1.2723 1.4963 26 6 5.9281 1.6068 2.2836 27 6 5.3104 2.6491 1.3492 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 3.1264 -0.7995 -1.2056 32 1 1.6054 -1.7198 -1.2952 33 1 1.8930 -0.0450 -5.6799 34 1 5.0405 -2.2939 5.4402 35 1 4.7423 -2.8883 3.7922 36 1 3.3457 -4.3534 5.2306 37 1 1.2862 -3.5211 5.9253 38 1 1.0261 -1.1669 4.6753 39 1 1.1730 -1.0860 6.4470 40 1 2.7045 0.4999 5.1506 41 1 3.5313 -0.5761 6.3080 42 1 2.6212 1.8797 1.8384 43 1 3.5224 1.4637 3.3160 44 1 4.7537 0.5792 0.6605 45 1 5.8262 1.7700 3.3565 46 1 6.8572 1.1336 1.9658 47 1 5.8332 2.8616 0.4166 48 1 4.8025 3.4975 1.8077 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001348109433.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:56 Heat of formation + Delta-G solvation = 127.201142 kcal Electronic energy + Delta-G solvation = -27759.386599 eV Core-core repulsion = 24237.994148 eV Total energy + Delta-G solvation = -3521.392451 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.76866 -39.43023 -37.74373 -35.37388 -34.17671 -32.92111 -32.09654 -31.14235 -28.89568 -27.65105 -27.40563 -24.87988 -24.15179 -23.40393 -22.47490 -21.72673 -21.36767 -20.65050 -19.14689 -18.32338 -17.15682 -16.72815 -16.55316 -16.11609 -15.20117 -15.14496 -14.84548 -14.32115 -14.17269 -14.03604 -13.88524 -13.42575 -13.18936 -13.03390 -12.75399 -12.62785 -12.19946 -12.01562 -11.94787 -11.80040 -11.61294 -11.43242 -11.14991 -11.08942 -11.06769 -10.81740 -10.55832 -10.36286 -10.10908 -10.01612 -9.91811 -9.79196 -9.76108 -9.21578 -9.16038 -8.94134 -8.53180 -8.15745 -6.05133 -4.03215 2.04670 2.24675 2.44083 3.25133 3.34806 3.41649 3.48426 3.60078 3.79031 4.47213 4.50053 4.56232 4.65356 4.71567 4.79619 4.86168 4.91388 4.96490 4.98407 5.20718 5.24066 5.29160 5.33049 5.38552 5.41476 5.48616 5.51434 5.55495 5.56598 5.80462 5.80566 5.91430 5.95780 6.02014 6.02652 6.08991 6.20422 6.28876 6.45321 6.56516 6.65078 6.72137 6.78683 6.89060 7.01904 7.22055 7.38591 7.42634 7.75954 8.49459 8.97595 9.18224 9.57715 11.07550 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.013753 B = 0.004437 C = 0.003921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.485329 B = 6309.052697 C = 7138.771604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.008 3.992 3 H 0.078 0.922 4 C 0.003 3.997 5 C -0.517 4.517 6 H 0.076 0.924 7 C 0.072 3.928 8 N -0.901 5.901 9 Si 0.874 3.126 10 H -0.275 1.275 11 H -0.288 1.288 12 H -0.267 1.267 13 C 0.211 3.789 14 N -0.291 5.291 15 N -0.306 5.306 16 C 0.329 3.671 17 N -0.449 5.449 18 C 0.100 3.900 19 C -0.169 4.169 20 C -0.143 4.143 21 C -0.123 4.123 22 C 0.056 3.944 23 N -0.470 5.470 24 C 0.147 3.853 25 C -0.170 4.170 26 C -0.169 4.169 27 C -0.168 4.168 28 H 0.079 0.921 29 H 0.059 0.941 30 H 0.032 0.968 31 H 0.013 0.987 32 H 0.026 0.974 33 H 0.263 0.737 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.110 0.890 37 H 0.104 0.896 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.092 0.908 42 H 0.097 0.903 43 H 0.093 0.907 44 H 0.113 0.887 45 H 0.096 0.904 46 H 0.093 0.907 47 H 0.100 0.900 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.053 2.400 22.739 23.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.013 4.013 3 H 0.096 0.904 4 C -0.035 4.035 5 C -0.555 4.555 6 H 0.094 0.906 7 C -0.130 4.130 8 N -0.540 5.540 9 Si 0.701 3.299 10 H -0.200 1.200 11 H -0.215 1.215 12 H -0.192 1.192 13 C -0.056 4.056 14 N -0.129 5.129 15 N -0.149 5.149 16 C -0.028 4.028 17 N -0.172 5.172 18 C -0.027 4.027 19 C -0.188 4.188 20 C -0.161 4.161 21 C -0.161 4.161 22 C -0.071 4.071 23 N -0.163 5.163 24 C 0.024 3.976 25 C -0.189 4.189 26 C -0.206 4.206 27 C -0.205 4.205 28 H 0.098 0.902 29 H 0.078 0.922 30 H 0.052 0.948 31 H 0.031 0.969 32 H 0.044 0.956 33 H 0.073 0.927 34 H 0.113 0.887 35 H 0.107 0.893 36 H 0.128 0.872 37 H 0.122 0.878 38 H 0.091 0.909 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.110 0.890 42 H 0.115 0.885 43 H 0.111 0.889 44 H 0.131 0.869 45 H 0.114 0.886 46 H 0.111 0.889 47 H 0.118 0.882 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 5.953 1.318 22.405 23.220 hybrid contribution 0.462 -0.135 -0.079 0.488 sum 6.415 1.182 22.326 23.260 Atomic orbital electron populations 1.21692 0.93296 1.02510 1.01042 1.19744 0.96403 0.97681 0.87451 0.90363 1.19566 0.95902 0.96519 0.91524 1.21019 1.35920 1.09676 0.88848 0.90568 1.24925 0.95419 0.96761 0.95853 1.69898 1.46890 1.39200 0.98037 0.86861 0.80846 0.84557 0.77587 1.20035 1.21462 1.19158 1.25585 0.94600 0.91995 0.93459 1.74035 1.20086 1.11047 1.07770 1.74690 1.10599 1.22345 1.07279 1.22247 1.00461 0.86728 0.93324 1.59378 1.32629 1.25329 0.99828 1.20958 0.95524 0.85063 1.01174 1.22483 0.96299 1.00186 0.99836 1.21845 0.97144 0.96089 1.01058 1.21032 0.98520 0.93962 1.02576 1.22365 0.93108 0.98157 0.93485 1.46260 1.40035 1.11952 1.18038 1.21341 0.94856 0.79933 1.01481 1.22562 0.92888 1.00883 1.02616 1.23005 0.96766 1.03009 0.97802 1.22961 1.03541 0.92036 1.01988 0.90198 0.92160 0.94844 0.96906 0.95596 0.92712 0.88710 0.89251 0.87211 0.87776 0.90872 0.90451 0.90453 0.88991 0.88497 0.88869 0.86875 0.88598 0.88852 0.88174 0.88560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.38 8.99 37.16 0.33 -2.05 16 2 C 0.01 0.16 2.71 -91.77 -0.25 -0.08 16 3 H 0.08 1.46 7.04 -51.93 -0.37 1.09 16 4 C 0.00 0.08 3.50 -27.88 -0.10 -0.02 16 5 C -0.52 -14.18 8.96 -34.44 -0.31 -14.48 16 6 H 0.08 2.19 7.30 -52.49 -0.38 1.80 16 7 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 8 N -0.90 -27.30 13.96 55.43 0.77 -26.52 16 9 Si 0.87 22.22 27.47 -169.99 -4.67 17.55 16 10 H -0.27 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 12 H -0.27 -6.72 6.54 56.52 0.37 -6.35 16 13 C 0.21 4.01 6.58 -154.02 -1.01 3.00 16 14 N -0.29 -6.10 12.18 32.99 0.40 -5.70 16 15 N -0.31 -5.75 9.80 30.32 0.30 -5.45 16 16 C 0.33 5.15 5.38 -318.87 -1.72 3.43 16 17 N -0.45 -5.42 5.06 -175.99 -0.89 -6.31 16 18 C 0.10 1.11 5.72 -5.28 -0.03 1.08 16 19 C -0.17 -1.92 8.82 -35.96 -0.32 -2.23 16 20 C -0.14 -1.64 9.22 -35.89 -0.33 -1.98 16 21 C -0.12 -1.32 5.58 -28.02 -0.16 -1.48 16 22 C 0.06 0.54 6.01 -3.64 -0.02 0.52 16 23 N -0.47 -7.38 2.81 -114.08 -0.32 -7.70 16 24 C 0.15 1.78 6.09 -4.04 -0.02 1.76 16 25 C -0.17 -2.13 6.01 -90.62 -0.54 -2.67 16 26 C -0.17 -1.70 10.18 -26.73 -0.27 -1.97 16 27 C -0.17 -1.70 10.25 -26.73 -0.27 -1.98 16 28 H 0.08 1.57 6.95 -51.93 -0.36 1.21 16 29 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.01 0.32 7.20 -51.92 -0.37 -0.06 16 32 H 0.03 0.66 7.57 -51.93 -0.39 0.26 16 33 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 34 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.09 1.13 8.02 -51.93 -0.42 0.71 16 36 H 0.11 1.15 8.06 -52.49 -0.42 0.72 16 37 H 0.10 1.13 8.06 -52.49 -0.42 0.70 16 38 H 0.07 1.01 7.35 -51.93 -0.38 0.63 16 39 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.08 0.69 7.49 -51.93 -0.39 0.30 16 41 H 0.09 0.69 8.08 -51.93 -0.42 0.27 16 42 H 0.10 1.11 7.40 -51.93 -0.38 0.72 16 43 H 0.09 0.92 7.22 -51.93 -0.38 0.55 16 44 H 0.11 1.78 8.14 -51.93 -0.42 1.36 16 45 H 0.10 0.84 8.03 -51.93 -0.42 0.43 16 46 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 47 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 48 H 0.10 0.82 8.14 -51.94 -0.42 0.40 16 LS Contribution 380.70 15.07 5.74 5.74 Total: -1.00 -32.58 380.70 -11.84 -44.43 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -8.05 Total: 1.16 kcal Atomic # 6 Polarization: -12.08 SS G_CDS: -5.12 Total: -17.20 kcal Atomic # 7 Polarization: -51.94 SS G_CDS: 0.26 Total: -51.68 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.67 Total: 17.55 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.58 -11.84 -44.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348109433.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.627 kcal (2) G-P(sol) polarization free energy of solvation -32.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds