Wall clock time and date at job start Tue Mar 31 2020 11:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47309 * 2 1 4 4 C 1.53004 * 109.46822 * 240.00111 * 2 1 3 5 5 C 1.50697 * 109.47086 * 65.00381 * 4 2 1 6 6 H 1.07999 * 120.00192 * 359.97438 * 5 4 2 7 7 C 1.37884 * 119.99617 * 179.97438 * 5 4 2 8 8 N 1.31514 * 119.99452 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 120.00013 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.47070 * 90.00421 * 9 7 5 11 11 H 1.48501 * 109.46879 * 209.99941 * 9 7 5 12 12 H 1.48496 * 109.47236 * 329.99757 * 9 7 5 13 13 C 1.50704 * 109.46954 * 120.00417 * 2 1 3 14 14 N 1.30290 * 126.34838 * 59.95689 * 13 2 1 15 15 N 1.28526 * 110.05360 * 179.76468 * 14 13 2 16 16 C 1.31216 * 109.85809 * 0.45300 * 15 14 13 17 17 N 1.38587 * 126.47164 * 179.82788 * 16 15 14 18 18 C 1.46842 * 111.00076 * 26.51580 * 17 16 15 19 19 C 1.50145 * 110.27601 * 287.54026 * 18 17 16 20 20 C 1.29826 * 123.28201 * 342.95187 * 19 18 17 21 21 C 1.50306 * 122.89604 * 0.34763 * 20 19 18 22 22 C 1.47141 * 111.01643 * 263.60958 * 17 16 15 23 23 N 1.36451 * 107.05693 * 359.55813 * 16 15 14 24 24 C 1.46494 * 127.14018 * 180.24172 * 23 16 15 25 25 C 1.53006 * 109.47059 * 93.81018 * 24 23 16 26 26 C 1.52998 * 117.49923 * 243.79366 * 25 24 23 27 27 C 1.53002 * 117.49568 * 175.16923 * 25 24 23 28 28 H 1.08998 * 109.46812 * 59.99886 * 1 2 3 29 29 H 1.08999 * 109.47309 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47129 * 299.99829 * 1 2 3 31 31 H 1.09010 * 109.46678 * 185.00418 * 4 2 1 32 32 H 1.08995 * 109.47313 * 304.99915 * 4 2 1 33 33 H 0.96999 * 119.99857 * 180.02562 * 8 7 5 34 34 H 1.09003 * 109.33308 * 167.29418 * 18 17 16 35 35 H 1.09001 * 109.33682 * 47.78731 * 18 17 16 36 36 H 1.07999 * 118.35765 * 162.93025 * 19 18 17 37 37 H 1.07997 * 118.55102 * 180.37518 * 20 19 18 38 38 H 1.09001 * 109.42937 * 103.59724 * 21 20 19 39 39 H 1.09002 * 109.42875 * 223.50381 * 21 20 19 40 40 H 1.08994 * 109.58158 * 294.85190 * 22 17 16 41 41 H 1.09000 * 109.63541 * 174.27592 * 22 17 16 42 42 H 1.09003 * 109.47510 * 213.80838 * 24 23 16 43 43 H 1.08999 * 109.47308 * 333.81188 * 24 23 16 44 44 H 1.08994 * 115.54698 * 29.50282 * 25 24 23 45 45 H 1.09003 * 117.49567 * 359.97438 * 26 25 24 46 46 H 1.09002 * 117.50190 * 145.02064 * 26 25 24 47 47 H 1.09005 * 117.49595 * 214.97593 * 27 25 24 48 48 H 1.08989 * 117.50300 * 0.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6413 0.0571 -2.4766 6 1 1.0800 0.9743 -2.3757 7 6 1.9933 -0.4017 -3.7283 8 7 1.6458 0.2779 -4.7993 9 14 2.9647 -1.9876 -3.9027 10 1 2.0263 -3.1326 -4.0196 11 1 3.8133 -1.9170 -5.1193 12 1 3.8268 -2.1740 -2.7081 13 6 2.0323 -0.7105 1.2305 14 7 1.7944 -1.9488 1.5583 15 7 2.3798 -2.2315 2.6671 16 6 3.0200 -1.1771 3.1145 17 7 3.7626 -1.0982 4.2820 18 6 4.2865 -2.4161 4.6625 19 6 3.1779 -3.2879 5.1775 20 6 2.0275 -2.8249 5.5618 21 6 1.6820 -1.3625 5.5237 22 6 2.9615 -0.5342 5.3798 23 7 2.8217 -0.1748 2.2101 24 6 3.3452 1.1919 2.2754 25 6 4.6596 1.2723 1.4963 26 6 5.9281 1.6068 2.2836 27 6 5.3104 2.6491 1.3492 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 3.1264 -0.7995 -1.2056 32 1 1.6054 -1.7198 -1.2952 33 1 1.8930 -0.0450 -5.6799 34 1 5.0405 -2.2939 5.4402 35 1 4.7423 -2.8883 3.7922 36 1 3.3457 -4.3534 5.2306 37 1 1.2862 -3.5211 5.9253 38 1 1.0261 -1.1669 4.6753 39 1 1.1730 -1.0860 6.4470 40 1 2.7045 0.4999 5.1506 41 1 3.5313 -0.5761 6.3080 42 1 2.6212 1.8797 1.8384 43 1 3.5224 1.4637 3.3160 44 1 4.7537 0.5792 0.6605 45 1 5.8262 1.7700 3.3565 46 1 6.8572 1.1336 1.9658 47 1 5.8332 2.8616 0.4166 48 1 4.8025 3.4975 1.8077 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001348109433.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:55 Heat of formation + Delta-G solvation = 110.164253 kcal Electronic energy + Delta-G solvation = -27760.125374 eV Core-core repulsion = 24237.994148 eV Total energy + Delta-G solvation = -3522.131226 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.06618 -40.37559 -38.66709 -37.09011 -35.35179 -34.44468 -33.68114 -31.96537 -30.42029 -29.25911 -28.61903 -25.92478 -25.70541 -24.38715 -23.50615 -23.15191 -22.45290 -21.74619 -20.59163 -19.37582 -19.08712 -17.95286 -17.63748 -17.17337 -16.50539 -16.19636 -16.03640 -15.78547 -15.54331 -15.15004 -15.07171 -14.89701 -14.65807 -14.10465 -13.95713 -13.77518 -13.56160 -13.13546 -13.11310 -13.01003 -12.95581 -12.75793 -12.62613 -12.44760 -12.35436 -12.01815 -11.92594 -11.87911 -11.71397 -11.53258 -11.42396 -11.23382 -10.97479 -10.92668 -10.77223 -10.35868 -9.86243 -9.39466 -8.29974 -6.30809 0.77787 1.24802 1.29568 1.32407 1.40713 1.42848 1.86531 2.32606 2.66504 2.88124 3.05552 3.39993 3.58647 3.75266 3.77428 3.85802 3.94836 3.98061 4.01669 4.10720 4.15493 4.25701 4.32770 4.39842 4.45724 4.48511 4.53862 4.58203 4.69780 4.70285 4.79538 4.80427 4.94149 4.97363 5.00603 5.02468 5.07182 5.10634 5.17920 5.24649 5.27126 5.31952 5.46510 5.54193 5.59038 5.65507 5.73396 6.00589 6.26225 6.26540 6.74376 7.32866 7.81810 8.85538 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.013753 B = 0.004437 C = 0.003921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.485329 B = 6309.052697 C = 7138.771604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.017 3.983 3 H 0.090 0.910 4 C 0.013 3.987 5 C -0.512 4.512 6 H 0.057 0.943 7 C 0.021 3.979 8 N -0.940 5.940 9 Si 0.928 3.072 10 H -0.271 1.271 11 H -0.278 1.278 12 H -0.267 1.267 13 C 0.197 3.803 14 N -0.328 5.328 15 N -0.338 5.338 16 C 0.350 3.650 17 N -0.443 5.443 18 C 0.098 3.902 19 C -0.174 4.174 20 C -0.155 4.155 21 C -0.120 4.120 22 C 0.056 3.944 23 N -0.465 5.465 24 C 0.144 3.856 25 C -0.196 4.196 26 C -0.152 4.152 27 C -0.157 4.157 28 H 0.065 0.935 29 H 0.046 0.954 30 H 0.062 0.938 31 H 0.001 0.999 32 H 0.010 0.990 33 H 0.266 0.734 34 H 0.132 0.868 35 H 0.069 0.931 36 H 0.113 0.887 37 H 0.104 0.896 38 H 0.039 0.961 39 H 0.101 0.899 40 H 0.091 0.909 41 H 0.125 0.875 42 H 0.104 0.896 43 H 0.125 0.875 44 H 0.071 0.929 45 H 0.119 0.881 46 H 0.089 0.911 47 H 0.092 0.908 48 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.480 3.391 25.877 27.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.004 4.004 3 H 0.108 0.892 4 C -0.026 4.026 5 C -0.550 4.550 6 H 0.075 0.925 7 C -0.177 4.177 8 N -0.581 5.581 9 Si 0.754 3.246 10 H -0.197 1.197 11 H -0.204 1.204 12 H -0.192 1.192 13 C -0.071 4.071 14 N -0.167 5.167 15 N -0.181 5.181 16 C -0.007 4.007 17 N -0.167 5.167 18 C -0.029 4.029 19 C -0.194 4.194 20 C -0.174 4.174 21 C -0.158 4.158 22 C -0.070 4.070 23 N -0.157 5.157 24 C 0.023 3.977 25 C -0.215 4.215 26 C -0.189 4.189 27 C -0.195 4.195 28 H 0.084 0.916 29 H 0.065 0.935 30 H 0.081 0.919 31 H 0.020 0.980 32 H 0.028 0.972 33 H 0.075 0.925 34 H 0.149 0.851 35 H 0.087 0.913 36 H 0.131 0.869 37 H 0.122 0.878 38 H 0.057 0.943 39 H 0.120 0.880 40 H 0.109 0.891 41 H 0.143 0.857 42 H 0.122 0.878 43 H 0.143 0.857 44 H 0.089 0.911 45 H 0.137 0.863 46 H 0.108 0.892 47 H 0.111 0.889 48 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 7.388 2.320 25.557 26.705 hybrid contribution 0.051 -0.415 -0.963 1.050 sum 7.439 1.905 24.594 25.765 Atomic orbital electron populations 1.21586 0.92573 1.01836 1.01718 1.19477 0.96972 0.97677 0.86241 0.89208 1.19372 0.94997 0.95679 0.92505 1.21255 1.34650 1.09022 0.90070 0.92517 1.25635 0.96609 0.99614 0.95807 1.69999 1.48565 1.40926 0.98597 0.85993 0.79732 0.81177 0.77711 1.19681 1.20392 1.19176 1.25119 0.96057 0.91892 0.94072 1.73929 1.21467 1.12253 1.09062 1.74604 1.12234 1.24045 1.07224 1.22649 0.98461 0.85707 0.93846 1.59623 1.31958 1.25828 0.99299 1.21084 0.95992 0.84466 1.01346 1.22608 0.96569 1.00602 0.99573 1.22004 0.97196 0.96809 1.01342 1.21023 0.98807 0.93681 1.02317 1.22580 0.92570 0.98241 0.93638 1.46355 1.39154 1.13208 1.17006 1.21662 0.94636 0.78063 1.03359 1.22407 0.94486 1.02004 1.02620 1.23090 0.95148 1.01779 0.98862 1.23062 1.02661 0.91711 1.02025 0.91617 0.93481 0.91932 0.98031 0.97166 0.92465 0.85058 0.91280 0.86870 0.87772 0.94268 0.88031 0.89113 0.85670 0.87807 0.85739 0.91072 0.86272 0.89210 0.88910 0.86191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.49 8.99 71.98 0.65 -3.85 16 2 C 0.02 0.69 2.71 -11.54 -0.03 0.66 16 3 H 0.09 3.34 7.04 -2.39 -0.02 3.33 16 4 C 0.01 0.64 3.50 29.85 0.10 0.74 16 5 C -0.51 -28.82 8.96 25.60 0.23 -28.59 16 6 H 0.06 3.36 7.30 -2.91 -0.02 3.33 16 7 C 0.02 1.24 5.47 84.66 0.46 1.71 16 8 N -0.94 -58.03 13.96 21.45 0.30 -57.74 16 9 Si 0.93 46.62 27.47 68.60 1.88 48.50 16 10 H -0.27 -13.41 7.11 99.48 0.71 -12.70 16 11 H -0.28 -13.44 7.11 99.48 0.71 -12.74 16 12 H -0.27 -13.30 6.54 99.48 0.65 -12.65 16 13 C 0.20 7.54 6.58 137.64 0.91 8.45 16 14 N -0.33 -14.02 12.18 -49.54 -0.60 -14.62 16 15 N -0.34 -12.72 9.80 -58.00 -0.57 -13.29 16 16 C 0.35 10.53 5.38 260.11 1.40 11.93 16 17 N -0.44 -9.42 5.06 -710.72 -3.59 -13.01 16 18 C 0.10 1.92 5.72 85.39 0.49 2.41 16 19 C -0.17 -3.67 8.82 26.68 0.24 -3.44 16 20 C -0.16 -3.32 9.22 26.73 0.25 -3.08 16 21 C -0.12 -2.30 5.58 29.76 0.17 -2.13 16 22 C 0.06 0.85 6.01 86.29 0.52 1.37 16 23 N -0.46 -14.11 2.81 -514.85 -1.45 -15.55 16 24 C 0.14 3.16 6.09 86.38 0.53 3.69 16 25 C -0.20 -4.63 6.01 -10.79 -0.06 -4.69 16 26 C -0.15 -2.63 10.18 30.60 0.31 -2.32 16 27 C -0.16 -2.82 10.25 30.60 0.31 -2.51 16 28 H 0.06 2.63 6.95 -2.39 -0.02 2.62 16 29 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.00 0.07 7.20 -2.38 -0.02 0.05 16 32 H 0.01 0.53 7.57 -2.39 -0.02 0.51 16 33 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 34 H 0.13 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.07 1.66 8.02 -2.39 -0.02 1.65 16 36 H 0.11 2.25 8.06 -2.91 -0.02 2.23 16 37 H 0.10 2.16 8.06 -2.91 -0.02 2.14 16 38 H 0.04 1.04 7.35 -2.39 -0.02 1.02 16 39 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.09 1.18 7.49 -2.39 -0.02 1.16 16 41 H 0.13 1.17 8.08 -2.39 -0.02 1.15 16 42 H 0.10 2.12 7.40 -2.39 -0.02 2.11 16 43 H 0.12 1.93 7.22 -2.39 -0.02 1.91 16 44 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 45 H 0.12 1.53 8.03 -2.39 -0.02 1.51 16 46 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 47 H 0.09 1.80 8.14 -2.38 -0.02 1.78 16 48 H 0.12 1.59 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -73.28 380.70 3.30 -69.97 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: 0.87 Total: 15.38 kcal Atomic # 6 Polarization: -26.10 SS G_CDS: 6.46 Total: -19.64 kcal Atomic # 7 Polarization: -108.30 SS G_CDS: -5.91 Total: -114.21 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 1.88 Total: 48.50 kcal Total: -73.28 3.30 -69.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348109433.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.138 kcal (2) G-P(sol) polarization free energy of solvation -73.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds