Wall clock time and date at job start Tue Mar 31 2020 11:52:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.47523 * 2 1 4 4 C 1.53003 * 109.47213 * 119.99739 * 2 1 3 5 5 C 1.50700 * 109.46930 * 295.00002 * 4 2 1 6 6 H 1.08001 * 120.00333 * 359.97438 * 5 4 2 7 7 C 1.37880 * 119.99948 * 179.97438 * 5 4 2 8 8 N 1.31510 * 119.99915 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 119.99869 * 0.02562 * 7 5 4 10 10 H 1.48503 * 109.46994 * 89.99794 * 9 7 5 11 11 H 1.48500 * 109.47318 * 209.99475 * 9 7 5 12 12 H 1.48499 * 109.47148 * 329.99730 * 9 7 5 13 13 C 1.50704 * 109.47358 * 239.99550 * 2 1 3 14 14 N 1.30291 * 126.34712 * 300.04698 * 13 2 1 15 15 N 1.28527 * 110.05662 * 179.97438 * 14 13 2 16 16 C 1.31219 * 109.85388 * 359.74868 * 15 14 13 17 17 N 1.38580 * 126.46929 * 180.25648 * 16 15 14 18 18 C 1.46850 * 111.00199 * 15.21305 * 17 16 15 19 19 C 1.50141 * 110.27931 * 287.52153 * 18 17 16 20 20 C 1.29820 * 123.28374 * 342.98879 * 19 18 17 21 21 C 1.50311 * 122.89481 * 0.32621 * 20 19 18 22 22 C 1.47238 * 111.00307 * 252.28361 * 17 16 15 23 23 N 1.36451 * 107.05762 * 0.39522 * 16 15 14 24 24 C 1.46500 * 127.13679 * 179.87404 * 23 16 15 25 25 C 1.52995 * 109.47324 * 264.75493 * 24 23 16 26 26 C 1.53000 * 117.50151 * 243.62250 * 25 24 23 27 27 C 1.53000 * 60.00117 * 252.51029 * 26 25 24 28 28 H 1.09006 * 109.46939 * 60.00127 * 1 2 3 29 29 H 1.09001 * 109.47398 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47061 * 300.00270 * 1 2 3 31 31 H 1.09003 * 109.47049 * 54.99744 * 4 2 1 32 32 H 1.08995 * 109.47652 * 174.99829 * 4 2 1 33 33 H 0.97004 * 120.00001 * 180.02562 * 8 7 5 34 34 H 1.09004 * 109.33136 * 47.78392 * 18 17 16 35 35 H 1.09005 * 109.33457 * 167.28956 * 18 17 16 36 36 H 1.07999 * 118.35488 * 162.94437 * 19 18 17 37 37 H 1.08008 * 118.55464 * 180.35273 * 20 19 18 38 38 H 1.09001 * 109.42708 * 223.45311 * 21 20 19 39 39 H 1.08999 * 109.38900 * 103.57643 * 21 20 19 40 40 H 1.08995 * 109.64514 * 174.28129 * 22 17 16 41 41 H 1.09010 * 109.63368 * 294.89343 * 22 17 16 42 42 H 1.08998 * 109.47023 * 144.75914 * 24 23 16 43 43 H 1.08993 * 109.46753 * 24.76019 * 24 23 16 44 44 H 1.09001 * 115.54987 * 29.33597 * 25 24 23 45 45 H 1.08994 * 117.49780 * 0.02562 * 26 25 24 46 46 H 1.09002 * 117.49979 * 145.02145 * 26 25 24 47 47 H 1.09000 * 117.49797 * 252.51021 * 27 26 25 48 48 H 1.08996 * 117.50069 * 107.48692 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6413 0.0572 2.4766 6 1 1.0806 0.9747 2.3756 7 6 1.9923 -0.4020 3.7284 8 7 1.6448 0.2775 4.7993 9 14 2.9627 -1.9886 3.9029 10 1 4.4162 -1.6851 3.8793 11 1 2.6146 -2.6428 5.1899 12 1 2.6288 -2.8994 2.7785 13 6 2.0324 -0.7105 -1.2304 14 7 1.7944 -1.9488 -1.5583 15 7 2.3754 -2.2300 -2.6698 16 6 3.0161 -1.1757 -3.1168 17 7 3.7534 -1.0949 -4.2875 18 6 3.4556 -2.2255 -5.1760 19 6 4.0618 -3.4875 -4.6335 20 6 4.9949 -3.4989 -3.7310 21 6 5.5626 -2.2446 -3.1278 22 6 5.1963 -1.0407 -3.9997 23 7 2.8219 -0.1749 -2.2099 24 6 3.3457 1.1917 -2.2751 25 6 4.6448 1.2790 -1.4718 26 6 4.6574 2.1945 -0.2461 27 6 5.4132 2.6014 -1.5126 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.6053 -1.7198 1.2953 32 1 3.1263 -0.7995 1.2057 33 1 1.8921 -0.0454 5.6800 34 1 2.3753 -2.3483 -5.2541 35 1 3.8661 -2.0246 -6.1657 36 1 3.7031 -4.4330 -5.0126 37 1 5.3806 -4.4516 -3.3992 38 1 6.6474 -2.3309 -3.0660 39 1 5.1522 -2.1062 -2.1276 40 1 5.7579 -1.0800 -4.9330 41 1 5.4292 -0.1185 -3.4672 42 1 2.6130 1.8819 -1.8570 43 1 3.5423 1.4562 -3.3141 44 1 5.2280 0.3596 -1.4197 45 1 3.7400 2.7344 -0.0117 46 1 5.2488 1.8774 0.6129 47 1 6.5018 2.5520 -1.4868 48 1 4.9931 3.4093 -2.1117 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001348109434.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:59 Heat of formation + Delta-G solvation = 126.820314 kcal Electronic energy + Delta-G solvation = -28081.784152 eV Core-core repulsion = 24560.375187 eV Total energy + Delta-G solvation = -3521.408965 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.77211 -39.41542 -37.79410 -35.34194 -34.18463 -32.94826 -32.10139 -31.13350 -28.86810 -27.66268 -27.40120 -24.88865 -24.13821 -23.36799 -22.43952 -21.66782 -21.62731 -20.44131 -19.19426 -18.28960 -17.20871 -16.81960 -16.53612 -15.97070 -15.40932 -14.95753 -14.79672 -14.29009 -14.23935 -14.08035 -13.79046 -13.47548 -13.22064 -13.01398 -12.70376 -12.59292 -12.25045 -12.01184 -11.95374 -11.84479 -11.54906 -11.38858 -11.24806 -11.05313 -10.99551 -10.80815 -10.55798 -10.28236 -10.14235 -10.07392 -9.89633 -9.80523 -9.71459 -9.31795 -9.16363 -8.99973 -8.53842 -8.04807 -6.05567 -4.03311 2.05518 2.22413 2.46815 3.25708 3.31449 3.40364 3.49657 3.61544 3.75913 4.46670 4.51525 4.55617 4.66774 4.74840 4.79235 4.85540 4.91899 4.93168 5.03059 5.11192 5.25013 5.29090 5.31897 5.38299 5.43639 5.48094 5.51394 5.55421 5.58795 5.79755 5.90723 5.93798 5.97438 6.02463 6.04237 6.11508 6.19722 6.28195 6.44687 6.58634 6.66728 6.73932 6.78687 6.88254 7.03086 7.20510 7.39457 7.44472 7.76202 8.49304 8.97339 9.20610 9.57546 11.07122 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.013326 B = 0.004773 C = 0.004363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.682066 B = 5865.222207 C = 6416.752363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.010 3.990 3 H 0.077 0.923 4 C 0.004 3.996 5 C -0.515 4.515 6 H 0.076 0.924 7 C 0.073 3.927 8 N -0.902 5.902 9 Si 0.870 3.130 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.262 1.262 13 C 0.212 3.788 14 N -0.290 5.290 15 N -0.310 5.310 16 C 0.331 3.669 17 N -0.448 5.448 18 C 0.099 3.901 19 C -0.167 4.167 20 C -0.149 4.149 21 C -0.124 4.124 22 C 0.051 3.949 23 N -0.473 5.473 24 C 0.143 3.857 25 C -0.181 4.181 26 C -0.160 4.160 27 C -0.171 4.171 28 H 0.033 0.967 29 H 0.059 0.941 30 H 0.079 0.921 31 H 0.029 0.971 32 H 0.008 0.992 33 H 0.263 0.737 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.111 0.889 37 H 0.105 0.895 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.091 0.909 41 H 0.086 0.914 42 H 0.096 0.904 43 H 0.100 0.900 44 H 0.105 0.895 45 H 0.103 0.897 46 H 0.101 0.899 47 H 0.096 0.904 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.854 1.945 -20.238 22.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.011 4.011 3 H 0.095 0.905 4 C -0.034 4.034 5 C -0.553 4.553 6 H 0.094 0.906 7 C -0.129 4.129 8 N -0.540 5.540 9 Si 0.697 3.303 10 H -0.206 1.206 11 H -0.213 1.213 12 H -0.186 1.186 13 C -0.055 4.055 14 N -0.128 5.128 15 N -0.154 5.154 16 C -0.025 4.025 17 N -0.171 5.171 18 C -0.028 4.028 19 C -0.186 4.186 20 C -0.168 4.168 21 C -0.163 4.163 22 C -0.076 4.076 23 N -0.167 5.167 24 C 0.020 3.980 25 C -0.200 4.200 26 C -0.197 4.197 27 C -0.208 4.208 28 H 0.052 0.948 29 H 0.079 0.921 30 H 0.098 0.902 31 H 0.047 0.953 32 H 0.026 0.974 33 H 0.073 0.927 34 H 0.112 0.888 35 H 0.113 0.887 36 H 0.129 0.871 37 H 0.123 0.877 38 H 0.097 0.903 39 H 0.090 0.910 40 H 0.110 0.890 41 H 0.104 0.896 42 H 0.114 0.886 43 H 0.118 0.882 44 H 0.124 0.876 45 H 0.122 0.878 46 H 0.119 0.881 47 H 0.114 0.886 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 8.180 0.981 -20.257 21.868 hybrid contribution 1.420 -0.346 0.611 1.584 sum 9.600 0.635 -19.646 21.876 Atomic orbital electron populations 1.21700 0.93338 1.02544 1.01050 1.19712 0.96303 0.97592 0.87474 0.90508 1.19552 0.95531 0.96803 0.91522 1.21010 1.35895 1.09525 0.88823 0.90597 1.24909 0.95476 0.96630 0.95873 1.69894 1.46932 1.39181 0.98036 0.86917 0.80520 0.84955 0.77878 1.20552 1.21314 1.18615 1.25545 0.94538 0.92115 0.93322 1.74017 1.20447 1.11213 1.07146 1.74649 1.13772 1.20309 1.06647 1.22336 1.02907 0.85954 0.91305 1.59415 1.05682 1.43056 1.08914 1.20958 1.02054 0.85206 0.94541 1.22499 0.97125 0.99387 0.99597 1.21914 0.98838 0.98196 0.97817 1.21047 1.01326 0.94041 0.99859 1.22504 0.85869 0.98535 1.00726 1.46213 1.40051 1.11622 1.18820 1.21386 0.94567 0.80176 1.01867 1.22594 0.98317 0.95928 1.03165 1.23110 1.03039 1.01728 0.91848 1.22964 0.99040 0.96691 1.02154 0.94774 0.92148 0.90230 0.95259 0.97366 0.92737 0.88843 0.88687 0.87079 0.87707 0.90283 0.90972 0.89020 0.89601 0.88575 0.88226 0.87649 0.87840 0.88102 0.88593 0.88536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.42 8.99 37.16 0.33 -2.08 16 2 C 0.01 0.20 2.71 -91.77 -0.25 -0.05 16 3 H 0.08 1.41 7.07 -51.93 -0.37 1.05 16 4 C 0.00 0.10 3.50 -27.88 -0.10 0.00 16 5 C -0.51 -13.95 8.96 -34.44 -0.31 -14.26 16 6 H 0.08 2.15 7.30 -52.49 -0.38 1.77 16 7 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 8 N -0.90 -27.10 13.96 55.43 0.77 -26.33 16 9 Si 0.87 22.01 27.47 -169.99 -4.67 17.34 16 10 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 12 H -0.26 -6.64 6.54 56.52 0.37 -6.27 16 13 C 0.21 4.04 6.58 -154.02 -1.01 3.03 16 14 N -0.29 -6.13 12.18 32.99 0.40 -5.73 16 15 N -0.31 -5.89 10.28 30.31 0.31 -5.58 16 16 C 0.33 5.23 5.23 -318.88 -1.67 3.56 16 17 N -0.45 -5.50 5.03 -175.91 -0.89 -6.38 16 18 C 0.10 1.09 5.66 -5.27 -0.03 1.06 16 19 C -0.17 -1.93 8.86 -35.96 -0.32 -2.25 16 20 C -0.15 -1.83 9.49 -35.88 -0.34 -2.17 16 21 C -0.12 -1.47 5.65 -28.03 -0.16 -1.63 16 22 C 0.05 0.52 5.97 -3.59 -0.02 0.50 16 23 N -0.47 -7.43 2.81 -114.09 -0.32 -7.75 16 24 C 0.14 1.71 5.56 -4.04 -0.02 1.69 16 25 C -0.18 -2.10 5.00 -90.62 -0.45 -2.55 16 26 C -0.16 -1.95 10.18 -26.73 -0.27 -2.23 16 27 C -0.17 -1.57 10.25 -26.73 -0.27 -1.84 16 28 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.08 1.56 6.95 -51.93 -0.36 1.20 16 31 H 0.03 0.75 7.20 -51.93 -0.37 0.38 16 32 H 0.01 0.20 7.57 -51.93 -0.39 -0.20 16 33 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 34 H 0.09 1.12 7.90 -51.93 -0.41 0.71 16 35 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.11 1.17 8.06 -52.49 -0.42 0.74 16 37 H 0.10 1.23 8.06 -52.48 -0.42 0.80 16 38 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.07 1.11 7.48 -51.93 -0.39 0.72 16 40 H 0.09 0.74 8.08 -51.93 -0.42 0.32 16 41 H 0.09 0.84 5.79 -51.92 -0.30 0.54 16 42 H 0.10 1.10 7.19 -51.93 -0.37 0.73 16 43 H 0.10 1.01 8.11 -51.93 -0.42 0.59 16 44 H 0.11 1.36 7.47 -51.93 -0.39 0.97 16 45 H 0.10 1.29 8.03 -51.93 -0.42 0.87 16 46 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 47 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 48 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 378.07 15.07 5.70 5.70 Total: -1.00 -32.39 378.07 -11.65 -44.04 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -7.97 Total: 1.93 kcal Atomic # 6 Polarization: -12.24 SS G_CDS: -4.99 Total: -17.23 kcal Atomic # 7 Polarization: -52.06 SS G_CDS: 0.28 Total: -51.77 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.67 Total: 17.34 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.39 -11.65 -44.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348109434.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.860 kcal (2) G-P(sol) polarization free energy of solvation -32.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds