Wall clock time and date at job start Tue Mar 31 2020 11:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.47523 * 2 1 4 4 C 1.53003 * 109.47213 * 119.99739 * 2 1 3 5 5 C 1.50700 * 109.46930 * 295.00002 * 4 2 1 6 6 H 1.08001 * 120.00333 * 359.97438 * 5 4 2 7 7 C 1.37880 * 119.99948 * 179.97438 * 5 4 2 8 8 N 1.31510 * 119.99915 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 119.99869 * 0.02562 * 7 5 4 10 10 H 1.48503 * 109.46994 * 89.99794 * 9 7 5 11 11 H 1.48500 * 109.47318 * 209.99475 * 9 7 5 12 12 H 1.48499 * 109.47148 * 329.99730 * 9 7 5 13 13 C 1.50704 * 109.47358 * 239.99550 * 2 1 3 14 14 N 1.30291 * 126.34712 * 300.04698 * 13 2 1 15 15 N 1.28527 * 110.05662 * 179.97438 * 14 13 2 16 16 C 1.31219 * 109.85388 * 359.74868 * 15 14 13 17 17 N 1.38580 * 126.46929 * 180.25648 * 16 15 14 18 18 C 1.46850 * 111.00199 * 15.21305 * 17 16 15 19 19 C 1.50141 * 110.27931 * 287.52153 * 18 17 16 20 20 C 1.29820 * 123.28374 * 342.98879 * 19 18 17 21 21 C 1.50311 * 122.89481 * 0.32621 * 20 19 18 22 22 C 1.47238 * 111.00307 * 252.28361 * 17 16 15 23 23 N 1.36451 * 107.05762 * 0.39522 * 16 15 14 24 24 C 1.46500 * 127.13679 * 179.87404 * 23 16 15 25 25 C 1.52995 * 109.47324 * 264.75493 * 24 23 16 26 26 C 1.53000 * 117.50151 * 243.62250 * 25 24 23 27 27 C 1.53000 * 60.00117 * 252.51029 * 26 25 24 28 28 H 1.09006 * 109.46939 * 60.00127 * 1 2 3 29 29 H 1.09001 * 109.47398 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47061 * 300.00270 * 1 2 3 31 31 H 1.09003 * 109.47049 * 54.99744 * 4 2 1 32 32 H 1.08995 * 109.47652 * 174.99829 * 4 2 1 33 33 H 0.97004 * 120.00001 * 180.02562 * 8 7 5 34 34 H 1.09004 * 109.33136 * 47.78392 * 18 17 16 35 35 H 1.09005 * 109.33457 * 167.28956 * 18 17 16 36 36 H 1.07999 * 118.35488 * 162.94437 * 19 18 17 37 37 H 1.08008 * 118.55464 * 180.35273 * 20 19 18 38 38 H 1.09001 * 109.42708 * 223.45311 * 21 20 19 39 39 H 1.08999 * 109.38900 * 103.57643 * 21 20 19 40 40 H 1.08995 * 109.64514 * 174.28129 * 22 17 16 41 41 H 1.09010 * 109.63368 * 294.89343 * 22 17 16 42 42 H 1.08998 * 109.47023 * 144.75914 * 24 23 16 43 43 H 1.08993 * 109.46753 * 24.76019 * 24 23 16 44 44 H 1.09001 * 115.54987 * 29.33597 * 25 24 23 45 45 H 1.08994 * 117.49780 * 0.02562 * 26 25 24 46 46 H 1.09002 * 117.49979 * 145.02145 * 26 25 24 47 47 H 1.09000 * 117.49797 * 252.51021 * 27 26 25 48 48 H 1.08996 * 117.50069 * 107.48692 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6413 0.0572 2.4766 6 1 1.0806 0.9747 2.3756 7 6 1.9923 -0.4020 3.7284 8 7 1.6448 0.2775 4.7993 9 14 2.9627 -1.9886 3.9029 10 1 4.4162 -1.6851 3.8793 11 1 2.6146 -2.6428 5.1899 12 1 2.6288 -2.8994 2.7785 13 6 2.0324 -0.7105 -1.2304 14 7 1.7944 -1.9488 -1.5583 15 7 2.3754 -2.2300 -2.6698 16 6 3.0161 -1.1757 -3.1168 17 7 3.7534 -1.0949 -4.2875 18 6 3.4556 -2.2255 -5.1760 19 6 4.0618 -3.4875 -4.6335 20 6 4.9949 -3.4989 -3.7310 21 6 5.5626 -2.2446 -3.1278 22 6 5.1963 -1.0407 -3.9997 23 7 2.8219 -0.1749 -2.2099 24 6 3.3457 1.1917 -2.2751 25 6 4.6448 1.2790 -1.4718 26 6 4.6574 2.1945 -0.2461 27 6 5.4132 2.6014 -1.5126 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.6053 -1.7198 1.2953 32 1 3.1263 -0.7995 1.2057 33 1 1.8921 -0.0454 5.6800 34 1 2.3753 -2.3483 -5.2541 35 1 3.8661 -2.0246 -6.1657 36 1 3.7031 -4.4330 -5.0126 37 1 5.3806 -4.4516 -3.3992 38 1 6.6474 -2.3309 -3.0660 39 1 5.1522 -2.1062 -2.1276 40 1 5.7579 -1.0800 -4.9330 41 1 5.4292 -0.1185 -3.4672 42 1 2.6130 1.8819 -1.8570 43 1 3.5423 1.4562 -3.3141 44 1 5.2280 0.3596 -1.4197 45 1 3.7400 2.7344 -0.0117 46 1 5.2488 1.8774 0.6129 47 1 6.5018 2.5520 -1.4868 48 1 4.9931 3.4093 -2.1117 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001348109434.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:58 Heat of formation + Delta-G solvation = 109.734362 kcal Electronic energy + Delta-G solvation = -28082.525055 eV Core-core repulsion = 24560.375187 eV Total energy + Delta-G solvation = -3522.149868 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.07702 -40.39991 -38.73467 -37.05850 -35.36557 -34.45082 -33.73691 -32.01130 -30.40180 -29.24571 -28.65008 -25.92243 -25.72680 -24.41819 -23.43753 -23.22584 -22.66172 -21.52458 -20.63929 -19.38976 -19.07523 -18.04572 -17.73506 -17.05719 -16.39344 -16.35428 -16.02669 -15.86486 -15.44290 -15.20488 -15.09606 -14.90984 -14.63494 -14.17922 -13.97839 -13.79583 -13.59528 -13.21888 -13.09563 -12.98606 -12.90269 -12.76653 -12.66445 -12.45599 -12.37809 -12.01715 -11.97110 -11.84077 -11.73746 -11.52325 -11.44797 -11.19320 -10.97164 -10.96081 -10.76713 -10.51004 -9.93752 -9.31627 -8.29000 -6.29207 0.78591 1.23808 1.26683 1.32178 1.36037 1.44370 1.86921 2.33004 2.65520 2.81993 3.06738 3.39683 3.62906 3.68340 3.76840 3.83028 3.88698 3.95579 3.99719 4.06658 4.13295 4.21228 4.33657 4.36463 4.41614 4.48863 4.53540 4.54673 4.67958 4.68878 4.76049 4.81716 4.86938 4.96406 5.00910 5.02400 5.07429 5.12748 5.16140 5.22602 5.25838 5.33140 5.45673 5.53188 5.55660 5.64855 5.72789 5.94766 6.24086 6.27884 6.75827 7.34284 7.83185 8.86489 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.013326 B = 0.004773 C = 0.004363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.682066 B = 5865.222207 C = 6416.752363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.019 3.981 3 H 0.090 0.910 4 C 0.015 3.985 5 C -0.507 4.507 6 H 0.057 0.943 7 C 0.023 3.977 8 N -0.940 5.940 9 Si 0.923 3.077 10 H -0.270 1.270 11 H -0.280 1.280 12 H -0.267 1.267 13 C 0.199 3.801 14 N -0.328 5.328 15 N -0.343 5.343 16 C 0.352 3.648 17 N -0.441 5.441 18 C 0.096 3.904 19 C -0.164 4.164 20 C -0.169 4.169 21 C -0.121 4.121 22 C 0.053 3.947 23 N -0.468 5.468 24 C 0.138 3.862 25 C -0.186 4.186 26 C -0.189 4.189 27 C -0.131 4.131 28 H 0.061 0.939 29 H 0.046 0.954 30 H 0.065 0.935 31 H 0.009 0.991 32 H 0.001 0.999 33 H 0.265 0.735 34 H 0.081 0.919 35 H 0.135 0.865 36 H 0.119 0.881 37 H 0.102 0.898 38 H 0.098 0.902 39 H 0.030 0.970 40 H 0.126 0.874 41 H 0.093 0.907 42 H 0.102 0.898 43 H 0.128 0.872 44 H 0.090 0.910 45 H 0.097 0.903 46 H 0.080 0.920 47 H 0.110 0.890 48 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.612 2.854 -23.310 25.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.002 4.002 3 H 0.108 0.892 4 C -0.023 4.023 5 C -0.546 4.546 6 H 0.075 0.925 7 C -0.175 4.175 8 N -0.581 5.581 9 Si 0.749 3.251 10 H -0.195 1.195 11 H -0.206 1.206 12 H -0.191 1.191 13 C -0.070 4.070 14 N -0.167 5.167 15 N -0.186 5.186 16 C -0.005 4.005 17 N -0.164 5.164 18 C -0.030 4.030 19 C -0.184 4.184 20 C -0.188 4.188 21 C -0.159 4.159 22 C -0.073 4.073 23 N -0.161 5.161 24 C 0.017 3.983 25 C -0.205 4.205 26 C -0.227 4.227 27 C -0.168 4.168 28 H 0.080 0.920 29 H 0.065 0.935 30 H 0.084 0.916 31 H 0.027 0.973 32 H 0.019 0.981 33 H 0.075 0.925 34 H 0.100 0.900 35 H 0.152 0.848 36 H 0.137 0.863 37 H 0.120 0.880 38 H 0.117 0.883 39 H 0.049 0.951 40 H 0.144 0.856 41 H 0.111 0.889 42 H 0.121 0.879 43 H 0.146 0.854 44 H 0.109 0.891 45 H 0.115 0.885 46 H 0.099 0.901 47 H 0.129 0.871 48 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 9.955 1.901 -23.343 25.448 hybrid contribution 0.894 -0.603 1.475 1.827 sum 10.849 1.299 -21.869 24.446 Atomic orbital electron populations 1.21605 0.92778 1.01824 1.01709 1.19455 0.96755 0.97692 0.86264 0.89175 1.19345 0.94830 0.95688 0.92466 1.21229 1.34533 1.08822 0.89974 0.92508 1.25594 0.96674 0.99389 0.95849 1.69996 1.48642 1.40886 0.98574 0.86064 0.79748 0.81586 0.77705 1.19514 1.20600 1.19137 1.25094 0.95935 0.91978 0.93955 1.73911 1.21817 1.12485 1.08469 1.74552 1.15505 1.21907 1.06664 1.22713 1.01316 0.85042 0.91416 1.59619 1.06502 1.43323 1.06977 1.21146 1.01628 0.84477 0.95791 1.22685 0.96288 1.00225 0.99178 1.22028 0.99827 0.98442 0.98502 1.21016 1.02372 0.94693 0.97862 1.22664 0.84458 0.97984 1.02186 1.46310 1.39131 1.12856 1.17817 1.21732 0.94691 0.78242 1.03662 1.22495 0.98602 0.96498 1.02922 1.23081 1.03639 1.03444 0.92493 1.23077 0.99578 0.95248 0.98909 0.92000 0.93530 0.91563 0.97285 0.98095 0.92535 0.90023 0.84786 0.86345 0.87979 0.88315 0.95099 0.85569 0.88856 0.87941 0.85438 0.89148 0.88481 0.90130 0.87137 0.86074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.60 8.99 71.98 0.65 -3.95 16 2 C 0.02 0.77 2.71 -11.54 -0.03 0.74 16 3 H 0.09 3.31 7.07 -2.39 -0.02 3.29 16 4 C 0.02 0.74 3.50 29.85 0.10 0.85 16 5 C -0.51 -28.23 8.96 25.60 0.23 -28.00 16 6 H 0.06 3.32 7.30 -2.91 -0.02 3.30 16 7 C 0.02 1.32 5.47 84.66 0.46 1.78 16 8 N -0.94 -57.67 13.96 21.45 0.30 -57.37 16 9 Si 0.92 46.22 27.47 68.60 1.88 48.11 16 10 H -0.27 -13.00 7.11 99.48 0.71 -12.29 16 11 H -0.28 -13.66 7.11 99.48 0.71 -12.95 16 12 H -0.27 -13.47 6.54 99.48 0.65 -12.82 16 13 C 0.20 7.60 6.58 137.64 0.91 8.51 16 14 N -0.33 -14.10 12.18 -49.54 -0.60 -14.70 16 15 N -0.34 -12.99 10.28 -58.01 -0.60 -13.59 16 16 C 0.35 10.63 5.23 260.11 1.36 11.99 16 17 N -0.44 -9.50 5.03 -710.46 -3.58 -13.08 16 18 C 0.10 1.82 5.66 85.39 0.48 2.30 16 19 C -0.16 -3.51 8.86 26.69 0.24 -3.27 16 20 C -0.17 -3.94 9.49 26.74 0.25 -3.68 16 21 C -0.12 -2.67 5.65 29.75 0.17 -2.50 16 22 C 0.05 0.91 5.97 86.27 0.51 1.43 16 23 N -0.47 -14.11 2.81 -514.87 -1.45 -15.55 16 24 C 0.14 2.96 5.56 86.38 0.48 3.44 16 25 C -0.19 -3.96 5.00 -10.79 -0.05 -4.01 16 26 C -0.19 -4.47 10.18 30.59 0.31 -4.16 16 27 C -0.13 -1.97 10.25 30.59 0.31 -1.66 16 28 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 29 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.07 2.66 6.95 -2.39 -0.02 2.64 16 31 H 0.01 0.47 7.20 -2.39 -0.02 0.45 16 32 H 0.00 0.04 7.57 -2.39 -0.02 0.02 16 33 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 34 H 0.08 1.79 7.90 -2.38 -0.02 1.78 16 35 H 0.13 1.55 8.14 -2.38 -0.02 1.53 16 36 H 0.12 2.30 8.06 -2.91 -0.02 2.28 16 37 H 0.10 2.35 8.06 -2.91 -0.02 2.33 16 38 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.03 0.94 7.48 -2.39 -0.02 0.92 16 40 H 0.13 1.38 8.08 -2.39 -0.02 1.36 16 41 H 0.09 1.49 5.79 -2.38 -0.01 1.48 16 42 H 0.10 2.09 7.19 -2.39 -0.02 2.08 16 43 H 0.13 2.04 8.11 -2.39 -0.02 2.02 16 44 H 0.09 2.24 7.47 -2.39 -0.02 2.22 16 45 H 0.10 2.38 8.03 -2.39 -0.02 2.36 16 46 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 47 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 48 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -72.69 378.07 3.22 -69.47 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: 0.88 Total: 16.92 kcal Atomic # 6 Polarization: -26.59 SS G_CDS: 6.38 Total: -20.21 kcal Atomic # 7 Polarization: -108.36 SS G_CDS: -5.92 Total: -114.28 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 1.88 Total: 48.11 kcal Total: -72.69 3.22 -69.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348109434.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.200 kcal (2) G-P(sol) polarization free energy of solvation -72.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds