Wall clock time and date at job start Tue Mar 31 2020 11:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 H 1.09009 * 109.47112 * 309.25770 * 3 2 1 5 5 C 1.52996 * 109.47319 * 69.26201 * 3 2 1 6 6 N 1.46902 * 109.46867 * 189.26336 * 3 2 1 7 7 C 1.46899 * 111.00256 * 56.04297 * 6 3 2 8 8 C 1.38579 * 111.00094 * 179.97438 * 6 3 2 9 9 N 1.31221 * 126.47411 * 306.23358 * 8 6 3 10 10 N 1.28526 * 109.85937 * 179.97438 * 9 8 6 11 11 C 1.30298 * 110.05665 * 359.97438 * 10 9 8 12 12 C 1.50699 * 126.34604 * 179.97438 * 11 10 9 13 13 C 1.53003 * 109.46986 * 238.10617 * 12 11 10 14 14 C 1.52999 * 109.46820 * 118.10897 * 12 11 10 15 15 C 1.50699 * 109.47423 * 358.10597 * 12 11 10 16 16 H 1.08003 * 119.99944 * 0.02562 * 15 12 11 17 17 C 1.37872 * 120.00111 * 180.27336 * 15 12 11 18 18 N 1.31515 * 120.00103 * 359.72454 * 17 15 12 19 19 Si 1.86797 * 120.00093 * 179.72868 * 17 15 12 20 20 H 1.48503 * 109.47373 * 90.00003 * 19 17 15 21 21 H 1.48500 * 109.47175 * 210.00189 * 19 17 15 22 22 H 1.48500 * 109.47318 * 329.99782 * 19 17 15 23 23 N 1.36458 * 126.47421 * 126.51875 * 8 6 3 24 24 C 1.46495 * 127.13505 * 359.97438 * 23 8 6 25 25 C 1.53001 * 109.46980 * 91.64160 * 24 23 8 26 26 C 1.52996 * 117.49849 * 246.72457 * 25 24 23 27 27 C 1.52991 * 60.00183 * 252.51083 * 26 25 24 28 28 H 4.18744 * 15.04079 * 359.97438 * 4 2 1 29 29 H 1.08998 * 109.47289 * 60.00247 * 5 3 2 30 30 H 1.09004 * 109.47071 * 179.97438 * 5 3 2 31 31 H 1.08999 * 109.47200 * 299.99665 * 5 3 2 32 32 H 1.08997 * 109.47242 * 183.06681 * 7 6 3 33 33 H 1.08993 * 109.47234 * 303.06986 * 7 6 3 34 34 H 1.09002 * 109.46943 * 63.07130 * 7 6 3 35 35 H 1.08998 * 109.46774 * 176.30761 * 13 12 11 36 36 H 1.08995 * 109.47093 * 296.30594 * 13 12 11 37 37 H 1.08998 * 109.47298 * 56.31098 * 13 12 11 38 38 H 1.09001 * 109.47201 * 288.07151 * 14 12 11 39 39 H 1.08997 * 109.47358 * 48.07738 * 14 12 11 40 40 H 1.09004 * 109.47135 * 168.07829 * 14 12 11 41 41 H 0.97000 * 120.00456 * 179.97438 * 18 17 15 42 42 H 1.09000 * 109.47058 * 211.64151 * 24 23 8 43 43 H 1.08999 * 109.47873 * 331.64197 * 24 23 8 44 44 H 1.09000 * 115.55103 * 32.43665 * 25 24 23 45 45 H 1.08999 * 117.50417 * 0.02562 * 26 25 24 46 46 H 1.09005 * 117.49632 * 145.02406 * 26 25 24 47 47 H 1.09003 * 117.50444 * 252.50943 * 27 26 25 48 48 H 1.09000 * 117.50138 * 107.49001 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0097 -0.6495 0.7958 5 6 3.1563 -0.5099 -1.3490 6 7 3.1350 1.3678 0.2230 7 6 2.5880 1.9264 1.4666 8 6 4.5203 1.4049 0.2295 9 7 5.3167 0.6736 0.9730 10 7 6.5421 0.9682 0.7207 11 6 6.5997 1.8968 -0.1914 12 6 7.8516 2.5141 -0.7596 13 6 7.8239 4.0266 -0.5302 14 6 7.9256 2.2272 -2.2607 15 6 9.0578 1.9243 -0.0754 16 1 8.9306 1.1768 0.6938 17 6 10.3234 2.3425 -0.4276 18 7 10.4784 3.2523 -1.3646 19 14 11.8182 1.6169 0.4258 20 1 12.2780 0.4160 -0.3169 21 1 12.9076 2.6256 0.4589 22 1 11.4575 1.2323 1.8140 23 7 5.3137 2.2127 -0.5321 24 6 4.8782 3.2081 -1.5147 25 6 4.7337 4.5696 -0.8318 26 6 3.3255 5.1567 -0.7177 27 6 4.3273 5.7584 -1.7051 28 1 -1.0500 0.0000 0.0008 29 1 2.7927 0.1403 -2.1447 30 1 4.2463 -0.5089 -1.3491 31 1 2.7935 -1.5243 -1.5144 32 1 2.9223 2.9577 1.5797 33 1 1.4991 1.8995 1.4289 34 1 2.9369 1.3364 2.3142 35 1 8.7579 4.4645 -0.8821 36 1 6.9889 4.4621 -1.0790 37 1 7.7052 4.2305 0.5339 38 1 8.1574 1.1739 -2.4183 39 1 6.9667 2.4615 -2.7231 40 1 8.7055 2.8420 -2.7101 41 1 11.3688 3.5469 -1.6122 42 1 5.6173 3.2785 -2.3127 43 1 3.9179 2.9085 -1.9345 44 1 5.4269 4.7606 -0.0127 45 1 2.5018 4.5730 -1.1287 46 1 3.0919 5.7341 0.1769 47 1 4.7530 6.7315 -1.4603 48 1 4.1630 5.5705 -2.7661 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001348917249.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:59 Heat of formation + Delta-G solvation = 178.250642 kcal Electronic energy + Delta-G solvation = -28119.939825 eV Core-core repulsion = 24600.761046 eV Total energy + Delta-G solvation = -3519.178779 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.35468 -38.21076 -37.67540 -35.57368 -33.75298 -33.14453 -31.18427 -30.61593 -28.45852 -27.39851 -25.94841 -25.42830 -25.00542 -23.84479 -22.39470 -21.97874 -20.94797 -20.17077 -19.02979 -18.06234 -17.17001 -16.20987 -16.05640 -15.51422 -15.07443 -14.98790 -14.76069 -14.50224 -13.99286 -13.49302 -13.42812 -13.08251 -12.68114 -12.54077 -12.36002 -11.90073 -11.78262 -11.69557 -11.68505 -11.53023 -11.37799 -11.09960 -11.00021 -10.80456 -10.71725 -10.59032 -10.42945 -10.34781 -10.16313 -10.09932 -9.92289 -9.82875 -9.74004 -9.43996 -8.86011 -8.51925 -8.39782 -8.08441 -6.01534 -4.06273 2.31570 2.45358 2.71019 3.01065 3.34942 3.41095 3.49191 3.67089 3.77461 4.01473 4.20541 4.45787 4.70255 4.86735 4.96115 5.01440 5.15640 5.22908 5.27766 5.28857 5.40355 5.47482 5.53745 5.57619 5.60648 5.66194 5.73652 5.82991 5.86786 5.89575 6.05989 6.10039 6.13384 6.16159 6.25598 6.57978 6.61308 6.68553 6.69778 6.75334 6.79065 7.15275 7.23939 7.38447 7.45284 7.64448 7.81913 7.83415 8.10636 8.33106 9.00413 9.53721 9.63766 11.02636 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.015346 B = 0.004569 C = 0.003874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.087695 B = 6126.611158 C = 7225.007501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.168 4.168 3 C 0.200 3.800 4 H 0.082 0.918 5 C -0.139 4.139 6 N -0.454 5.454 7 C 0.036 3.964 8 C 0.308 3.692 9 N -0.320 5.320 10 N -0.288 5.288 11 C 0.245 3.755 12 C 0.146 3.854 13 C -0.139 4.139 14 C -0.127 4.127 15 C -0.492 4.492 16 H 0.077 0.923 17 C 0.064 3.936 18 N -0.894 5.894 19 Si 0.898 3.102 20 H -0.281 1.281 21 H -0.288 1.288 22 H -0.272 1.272 23 N -0.464 5.464 24 C 0.142 3.858 25 C -0.167 4.167 26 C -0.175 4.175 27 C -0.168 4.168 28 H 0.218 0.782 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.042 0.958 35 H 0.098 0.902 36 H 0.024 0.976 37 H 0.026 0.974 38 H 0.037 0.963 39 H 0.009 0.991 40 H 0.090 0.910 41 H 0.260 0.740 42 H 0.105 0.895 43 H 0.091 0.909 44 H 0.115 0.885 45 H 0.096 0.904 46 H 0.090 0.910 47 H 0.097 0.903 48 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.547 1.894 -2.269 17.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.168 4.168 3 C 0.093 3.907 4 H 0.100 0.900 5 C -0.196 4.196 6 N -0.180 5.180 7 C -0.112 4.112 8 C -0.048 4.048 9 N -0.165 5.165 10 N -0.126 5.126 11 C -0.021 4.021 12 C 0.143 3.857 13 C -0.198 4.198 14 C -0.185 4.185 15 C -0.531 4.531 16 H 0.095 0.905 17 C -0.137 4.137 18 N -0.534 5.534 19 Si 0.726 3.274 20 H -0.207 1.207 21 H -0.214 1.214 22 H -0.197 1.197 23 N -0.156 5.156 24 C 0.019 3.981 25 C -0.186 4.186 26 C -0.212 4.212 27 C -0.206 4.206 28 H 0.235 0.765 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.061 0.939 35 H 0.116 0.884 36 H 0.043 0.957 37 H 0.045 0.955 38 H 0.057 0.943 39 H 0.027 0.973 40 H 0.109 0.891 41 H 0.070 0.930 42 H 0.123 0.877 43 H 0.109 0.891 44 H 0.133 0.867 45 H 0.114 0.886 46 H 0.109 0.891 47 H 0.115 0.885 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -17.103 1.247 -1.714 17.233 hybrid contribution 0.322 0.223 0.158 0.422 sum -16.781 1.470 -1.555 16.917 Atomic orbital electron populations 1.24830 0.95676 0.99666 1.01439 1.22646 0.93637 1.00633 0.99895 1.18541 0.84177 0.88262 0.99674 0.90035 1.21772 1.01884 1.00982 0.95000 1.58570 1.00907 1.21156 1.37337 1.22404 1.00004 1.00159 0.88590 1.21882 0.89616 0.96599 0.96665 1.74514 0.97943 1.22903 1.21108 1.74133 1.09751 1.14099 1.14585 1.26222 0.85526 0.95217 0.95175 1.16923 0.84332 0.91970 0.92446 1.22085 1.02499 0.96628 0.98569 1.21935 0.98709 1.01484 0.96413 1.21082 0.88635 1.22679 1.20719 0.90514 1.24853 0.98809 0.94932 0.95094 1.69807 1.22495 1.30491 1.30561 0.86470 0.81932 0.78654 0.80301 1.20726 1.21430 1.19710 1.46320 1.06903 1.30326 1.32059 1.21479 1.01867 0.84885 0.89918 1.22706 0.99098 0.93423 1.03382 1.23031 0.92858 1.03880 1.01440 1.22910 1.03358 0.97217 0.97096 0.76486 0.91718 0.91492 0.91350 0.91011 0.90474 0.93902 0.88392 0.95744 0.95524 0.94336 0.97267 0.89148 0.93003 0.87684 0.89119 0.86676 0.88587 0.89121 0.88498 0.88615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.91 19.25 29.55 0.57 -1.34 16 2 C -0.17 -2.00 11.10 -37.12 -0.41 -2.41 16 3 C 0.20 2.74 2.43 -70.50 -0.17 2.57 16 4 H 0.08 1.21 8.01 -51.92 -0.42 0.79 16 5 C -0.14 -1.84 9.02 37.16 0.34 -1.50 16 6 N -0.45 -6.68 4.65 -177.98 -0.83 -7.51 16 7 C 0.04 0.47 9.23 60.06 0.55 1.03 16 8 C 0.31 5.61 5.11 -318.86 -1.63 3.98 16 9 N -0.32 -6.93 11.99 30.32 0.36 -6.57 16 10 N -0.29 -7.00 10.99 32.99 0.36 -6.64 16 11 C 0.25 5.50 6.32 -154.02 -0.97 4.52 16 12 C 0.15 3.43 0.51 -156.81 -0.08 3.35 16 13 C -0.14 -3.08 7.33 37.16 0.27 -2.81 16 14 C -0.13 -2.83 8.06 37.16 0.30 -2.53 16 15 C -0.49 -13.19 7.88 -34.44 -0.27 -13.47 16 16 H 0.08 2.19 6.94 -52.48 -0.36 1.83 16 17 C 0.06 1.67 5.14 -17.82 -0.09 1.58 16 18 N -0.89 -23.41 9.49 55.43 0.53 -22.89 16 19 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 23 N -0.46 -8.55 2.81 -114.09 -0.32 -8.87 16 24 C 0.14 2.12 5.44 -4.04 -0.02 2.09 16 25 C -0.17 -2.28 4.38 -90.62 -0.40 -2.68 16 26 C -0.18 -1.93 10.18 -26.74 -0.27 -2.20 16 27 C -0.17 -1.84 10.25 -26.74 -0.27 -2.11 16 28 H 0.22 1.27 7.80 -54.09 -0.42 0.85 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.07 1.06 7.22 -51.93 -0.38 0.69 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.08 0.86 6.87 -51.93 -0.36 0.51 16 34 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.10 2.37 5.97 -51.93 -0.31 2.06 16 36 H 0.02 0.45 4.40 -51.93 -0.23 0.23 16 37 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.04 0.89 8.09 -51.93 -0.42 0.47 16 39 H 0.01 0.17 5.23 -51.93 -0.27 -0.10 16 40 H 0.09 2.14 6.45 -51.93 -0.33 1.80 16 41 H 0.26 6.60 8.31 -40.82 -0.34 6.26 16 42 H 0.11 1.61 4.96 -51.93 -0.26 1.36 16 43 H 0.09 1.21 7.89 -51.93 -0.41 0.80 16 44 H 0.12 1.86 6.78 -51.93 -0.35 1.51 16 45 H 0.10 1.01 8.04 -51.93 -0.42 0.59 16 46 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 47 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 48 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 380.51 15.07 5.73 5.73 Total: -1.00 -29.09 380.51 -9.20 -38.28 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -7.45 Total: 4.14 kcal Atomic # 6 Polarization: -9.36 SS G_CDS: -2.56 Total: -11.92 kcal Atomic # 7 Polarization: -52.57 SS G_CDS: 0.10 Total: -52.47 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -29.09 -9.20 -38.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348917249.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 216.536 kcal (2) G-P(sol) polarization free energy of solvation -29.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 187.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 178.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds