Wall clock time and date at job start Tue Mar 31 2020 11:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 H 1.09009 * 109.47112 * 309.25770 * 3 2 1 5 5 C 1.52996 * 109.47319 * 69.26201 * 3 2 1 6 6 N 1.46902 * 109.46867 * 189.26336 * 3 2 1 7 7 C 1.46899 * 111.00256 * 56.04297 * 6 3 2 8 8 C 1.38579 * 111.00094 * 179.97438 * 6 3 2 9 9 N 1.31221 * 126.47411 * 306.23358 * 8 6 3 10 10 N 1.28526 * 109.85937 * 179.97438 * 9 8 6 11 11 C 1.30298 * 110.05665 * 359.97438 * 10 9 8 12 12 C 1.50699 * 126.34604 * 179.97438 * 11 10 9 13 13 C 1.53003 * 109.46986 * 238.10617 * 12 11 10 14 14 C 1.52999 * 109.46820 * 118.10897 * 12 11 10 15 15 C 1.50699 * 109.47423 * 358.10597 * 12 11 10 16 16 H 1.08003 * 119.99944 * 0.02562 * 15 12 11 17 17 C 1.37872 * 120.00111 * 180.27336 * 15 12 11 18 18 N 1.31515 * 120.00103 * 359.72454 * 17 15 12 19 19 Si 1.86797 * 120.00093 * 179.72868 * 17 15 12 20 20 H 1.48503 * 109.47373 * 90.00003 * 19 17 15 21 21 H 1.48500 * 109.47175 * 210.00189 * 19 17 15 22 22 H 1.48500 * 109.47318 * 329.99782 * 19 17 15 23 23 N 1.36458 * 126.47421 * 126.51875 * 8 6 3 24 24 C 1.46495 * 127.13505 * 359.97438 * 23 8 6 25 25 C 1.53001 * 109.46980 * 91.64160 * 24 23 8 26 26 C 1.52996 * 117.49849 * 246.72457 * 25 24 23 27 27 C 1.52991 * 60.00183 * 252.51083 * 26 25 24 28 28 H 4.18744 * 15.04079 * 359.97438 * 4 2 1 29 29 H 1.08998 * 109.47289 * 60.00247 * 5 3 2 30 30 H 1.09004 * 109.47071 * 179.97438 * 5 3 2 31 31 H 1.08999 * 109.47200 * 299.99665 * 5 3 2 32 32 H 1.08997 * 109.47242 * 183.06681 * 7 6 3 33 33 H 1.08993 * 109.47234 * 303.06986 * 7 6 3 34 34 H 1.09002 * 109.46943 * 63.07130 * 7 6 3 35 35 H 1.08998 * 109.46774 * 176.30761 * 13 12 11 36 36 H 1.08995 * 109.47093 * 296.30594 * 13 12 11 37 37 H 1.08998 * 109.47298 * 56.31098 * 13 12 11 38 38 H 1.09001 * 109.47201 * 288.07151 * 14 12 11 39 39 H 1.08997 * 109.47358 * 48.07738 * 14 12 11 40 40 H 1.09004 * 109.47135 * 168.07829 * 14 12 11 41 41 H 0.97000 * 120.00456 * 179.97438 * 18 17 15 42 42 H 1.09000 * 109.47058 * 211.64151 * 24 23 8 43 43 H 1.08999 * 109.47873 * 331.64197 * 24 23 8 44 44 H 1.09000 * 115.55103 * 32.43665 * 25 24 23 45 45 H 1.08999 * 117.50417 * 0.02562 * 26 25 24 46 46 H 1.09005 * 117.49632 * 145.02406 * 26 25 24 47 47 H 1.09003 * 117.50444 * 252.50943 * 27 26 25 48 48 H 1.09000 * 117.50138 * 107.49001 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0097 -0.6495 0.7958 5 6 3.1563 -0.5099 -1.3490 6 7 3.1350 1.3678 0.2230 7 6 2.5880 1.9264 1.4666 8 6 4.5203 1.4049 0.2295 9 7 5.3167 0.6736 0.9730 10 7 6.5421 0.9682 0.7207 11 6 6.5997 1.8968 -0.1914 12 6 7.8516 2.5141 -0.7596 13 6 7.8239 4.0266 -0.5302 14 6 7.9256 2.2272 -2.2607 15 6 9.0578 1.9243 -0.0754 16 1 8.9306 1.1768 0.6938 17 6 10.3234 2.3425 -0.4276 18 7 10.4784 3.2523 -1.3646 19 14 11.8182 1.6169 0.4258 20 1 12.2780 0.4160 -0.3169 21 1 12.9076 2.6256 0.4589 22 1 11.4575 1.2323 1.8140 23 7 5.3137 2.2127 -0.5321 24 6 4.8782 3.2081 -1.5147 25 6 4.7337 4.5696 -0.8318 26 6 3.3255 5.1567 -0.7177 27 6 4.3273 5.7584 -1.7051 28 1 -1.0500 0.0000 0.0008 29 1 2.7927 0.1403 -2.1447 30 1 4.2463 -0.5089 -1.3491 31 1 2.7935 -1.5243 -1.5144 32 1 2.9223 2.9577 1.5797 33 1 1.4991 1.8995 1.4289 34 1 2.9369 1.3364 2.3142 35 1 8.7579 4.4645 -0.8821 36 1 6.9889 4.4621 -1.0790 37 1 7.7052 4.2305 0.5339 38 1 8.1574 1.1739 -2.4183 39 1 6.9667 2.4615 -2.7231 40 1 8.7055 2.8420 -2.7101 41 1 11.3688 3.5469 -1.6122 42 1 5.6173 3.2785 -2.3127 43 1 3.9179 2.9085 -1.9345 44 1 5.4269 4.7606 -0.0127 45 1 2.5018 4.5730 -1.1287 46 1 3.0919 5.7341 0.1769 47 1 4.7530 6.7315 -1.4603 48 1 4.1630 5.5705 -2.7661 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001348917249.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:58 Heat of formation + Delta-G solvation = 164.254927 kcal Electronic energy + Delta-G solvation = -28120.546725 eV Core-core repulsion = 24600.761046 eV Total energy + Delta-G solvation = -3519.785679 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.92527 -39.40826 -38.77001 -37.32885 -35.15885 -34.23526 -33.06837 -31.61101 -30.04207 -28.68302 -27.76494 -27.18901 -26.40848 -24.99289 -23.67276 -23.21321 -22.17721 -21.58272 -20.62362 -18.99632 -18.48379 -17.90418 -17.42532 -16.90006 -16.80247 -16.18249 -16.05626 -15.69752 -15.25341 -15.15721 -14.76684 -14.44352 -14.14024 -13.79742 -13.57867 -13.40729 -13.25494 -13.00877 -12.87760 -12.77675 -12.75048 -12.71433 -12.51839 -12.45980 -12.30527 -12.04067 -11.94844 -11.81058 -11.64164 -11.48752 -11.37442 -11.20229 -10.90496 -10.84362 -10.66065 -10.39486 -9.93654 -9.71504 -8.04169 -6.13954 0.88473 1.20708 1.42946 1.45260 1.56225 1.89173 1.89582 2.01309 2.48667 2.76435 2.94511 3.22342 3.32531 3.63947 3.71165 3.82516 3.92435 4.04702 4.09580 4.14034 4.20346 4.25631 4.34939 4.50121 4.54922 4.59255 4.62357 4.77213 4.79134 4.81535 4.81704 4.89082 4.90999 5.02838 5.03432 5.04335 5.10544 5.17514 5.27340 5.29470 5.31353 5.51906 5.57303 5.61157 5.80887 5.96616 6.09692 6.32525 6.42861 6.66663 6.89089 7.51322 7.96104 8.97632 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.015346 B = 0.004569 C = 0.003874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.087695 B = 6126.611158 C = 7225.007501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.219 4.219 3 C 0.203 3.797 4 H 0.061 0.939 5 C -0.133 4.133 6 N -0.445 5.445 7 C 0.038 3.962 8 C 0.336 3.664 9 N -0.356 5.356 10 N -0.332 5.332 11 C 0.230 3.770 12 C 0.143 3.857 13 C -0.122 4.122 14 C -0.114 4.114 15 C -0.515 4.515 16 H 0.049 0.951 17 C 0.033 3.967 18 N -0.900 5.900 19 Si 0.944 3.056 20 H -0.279 1.279 21 H -0.277 1.277 22 H -0.283 1.283 23 N -0.457 5.457 24 C 0.139 3.861 25 C -0.195 4.195 26 C -0.157 4.157 27 C -0.151 4.151 28 H 0.258 0.742 29 H 0.074 0.926 30 H 0.032 0.968 31 H 0.085 0.915 32 H 0.071 0.929 33 H 0.105 0.895 34 H 0.028 0.972 35 H 0.077 0.923 36 H 0.055 0.945 37 H 0.009 0.991 38 H 0.018 0.982 39 H 0.040 0.960 40 H 0.076 0.924 41 H 0.263 0.737 42 H 0.100 0.900 43 H 0.113 0.887 44 H 0.086 0.914 45 H 0.108 0.892 46 H 0.097 0.903 47 H 0.103 0.897 48 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.939 2.980 -3.470 21.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.220 4.220 3 C 0.096 3.904 4 H 0.079 0.921 5 C -0.190 4.190 6 N -0.171 5.171 7 C -0.109 4.109 8 C -0.021 4.021 9 N -0.199 5.199 10 N -0.170 5.170 11 C -0.039 4.039 12 C 0.140 3.860 13 C -0.180 4.180 14 C -0.172 4.172 15 C -0.554 4.554 16 H 0.067 0.933 17 C -0.167 4.167 18 N -0.539 5.539 19 Si 0.771 3.229 20 H -0.205 1.205 21 H -0.203 1.203 22 H -0.209 1.209 23 N -0.148 5.148 24 C 0.018 3.982 25 C -0.214 4.214 26 C -0.194 4.194 27 C -0.189 4.189 28 H 0.274 0.726 29 H 0.093 0.907 30 H 0.051 0.949 31 H 0.104 0.896 32 H 0.090 0.910 33 H 0.123 0.877 34 H 0.047 0.953 35 H 0.096 0.904 36 H 0.074 0.926 37 H 0.028 0.972 38 H 0.037 0.963 39 H 0.058 0.942 40 H 0.095 0.905 41 H 0.072 0.928 42 H 0.118 0.882 43 H 0.131 0.869 44 H 0.104 0.896 45 H 0.127 0.873 46 H 0.115 0.885 47 H 0.121 0.879 48 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -20.500 2.348 -2.927 20.841 hybrid contribution 1.189 -0.132 0.545 1.315 sum -19.311 2.216 -2.382 19.583 Atomic orbital electron populations 1.25706 0.96240 0.96449 0.98299 1.22332 0.93306 1.03553 1.02771 1.18383 0.86065 0.86942 0.99011 0.92130 1.21723 0.99550 1.02406 0.95337 1.58872 0.98236 1.22128 1.37887 1.22452 1.01520 0.99615 0.87267 1.22208 0.90889 0.94453 0.94557 1.74414 0.97578 1.24777 1.23150 1.74014 1.11485 1.15511 1.16019 1.25835 0.86674 0.95673 0.95723 1.16826 0.83936 0.92460 0.92758 1.21874 1.02586 0.95842 0.97723 1.21746 0.99879 0.99784 0.95808 1.21179 0.90625 1.22779 1.20840 0.93288 1.25326 1.00359 0.95324 0.95678 1.69872 1.22925 1.30489 1.30636 0.85771 0.79908 0.78349 0.78843 1.20468 1.20254 1.20884 1.46394 1.05562 1.30629 1.32238 1.21732 1.02544 0.84854 0.89078 1.22507 1.01056 0.93780 1.04072 1.23092 0.91601 1.02928 1.01743 1.23043 1.02005 0.96013 0.97828 0.72623 0.90692 0.94883 0.89642 0.91017 0.87659 0.95342 0.90417 0.92635 0.97216 0.96308 0.94150 0.90534 0.92782 0.88182 0.86910 0.89594 0.87331 0.88474 0.87878 0.86876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 19.25 74.32 1.43 -0.77 16 2 C -0.22 -4.60 11.10 31.12 0.35 -4.25 16 3 C 0.20 5.38 2.43 43.11 0.10 5.48 16 4 H 0.06 1.84 8.01 -2.38 -0.02 1.82 16 5 C -0.13 -3.42 9.02 71.98 0.65 -2.78 16 6 N -0.45 -12.63 4.65 -717.01 -3.33 -15.96 16 7 C 0.04 0.96 9.23 127.69 1.18 2.13 16 8 C 0.34 12.37 5.11 260.11 1.33 13.70 16 9 N -0.36 -16.09 11.99 -58.00 -0.70 -16.79 16 10 N -0.33 -17.06 10.99 -49.54 -0.54 -17.61 16 11 C 0.23 10.68 6.32 137.64 0.87 11.55 16 12 C 0.14 6.94 0.51 -53.67 -0.03 6.91 16 13 C -0.12 -5.51 7.33 71.98 0.53 -4.98 16 14 C -0.11 -5.15 8.06 71.98 0.58 -4.57 16 15 C -0.52 -28.87 7.88 25.60 0.20 -28.67 16 16 H 0.05 2.97 6.94 -2.91 -0.02 2.95 16 17 C 0.03 1.77 5.14 84.65 0.44 2.20 16 18 N -0.90 -47.81 9.49 21.45 0.20 -47.61 16 19 Si 0.94 44.62 29.54 68.60 2.03 46.65 16 20 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 21 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 22 H -0.28 -13.80 7.11 99.48 0.71 -13.09 16 23 N -0.46 -16.94 2.81 -514.86 -1.45 -18.39 16 24 C 0.14 3.95 5.44 86.38 0.47 4.42 16 25 C -0.20 -4.98 4.38 -10.80 -0.05 -5.02 16 26 C -0.16 -2.94 10.18 30.59 0.31 -2.63 16 27 C -0.15 -2.82 10.25 30.59 0.31 -2.51 16 28 H 0.26 1.40 7.80 -4.42 -0.03 1.36 16 29 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.03 1.06 7.22 -2.38 -0.02 1.04 16 31 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.11 2.04 6.87 -2.39 -0.02 2.02 16 34 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.08 3.83 5.97 -2.39 -0.01 3.82 16 36 H 0.05 2.10 4.40 -2.39 -0.01 2.09 16 37 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 38 H 0.02 0.87 8.09 -2.39 -0.02 0.85 16 39 H 0.04 1.52 5.23 -2.39 -0.01 1.51 16 40 H 0.08 3.66 6.45 -2.39 -0.02 3.65 16 41 H 0.26 13.37 8.31 -92.71 -0.77 12.60 16 42 H 0.10 2.90 4.96 -2.39 -0.01 2.89 16 43 H 0.11 2.69 7.89 -2.39 -0.02 2.67 16 44 H 0.09 2.75 6.78 -2.39 -0.02 2.73 16 45 H 0.11 1.80 8.04 -2.39 -0.02 1.78 16 46 H 0.10 1.72 8.14 -2.38 -0.02 1.70 16 47 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 48 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -66.99 380.51 5.83 -61.15 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: 0.95 Total: 18.33 kcal Atomic # 6 Polarization: -18.44 SS G_CDS: 8.67 Total: -9.77 kcal Atomic # 7 Polarization: -110.54 SS G_CDS: -5.81 Total: -116.36 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -66.99 5.83 -61.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348917249.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 225.407 kcal (2) G-P(sol) polarization free energy of solvation -66.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 158.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 164.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds