Wall clock time and date at job start Tue Mar 31 2020 11:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 H 1.09000 * 109.47453 * 91.93822 * 3 2 1 5 5 C 1.53001 * 109.47517 * 331.93862 * 3 2 1 6 6 N 1.46894 * 109.47246 * 211.93846 * 3 2 1 7 7 C 1.46905 * 111.00210 * 303.95359 * 6 3 2 8 8 C 1.38580 * 111.00330 * 180.02562 * 6 3 2 9 9 N 1.31221 * 126.47348 * 0.04685 * 8 6 3 10 10 N 1.28531 * 109.85971 * 179.69460 * 9 8 6 11 11 C 1.30291 * 110.05220 * 0.44809 * 10 9 8 12 12 C 1.50702 * 126.34219 * 179.82501 * 11 10 9 13 13 C 1.52999 * 109.47279 * 2.01265 * 12 11 10 14 14 C 1.52995 * 109.46824 * 242.01026 * 12 11 10 15 15 C 1.50705 * 109.47017 * 122.01391 * 12 11 10 16 16 H 1.07999 * 119.99750 * 359.97438 * 15 12 11 17 17 C 1.37875 * 120.00038 * 180.27376 * 15 12 11 18 18 N 1.31514 * 119.99702 * 359.72403 * 17 15 12 19 19 Si 1.86800 * 120.00107 * 179.72461 * 17 15 12 20 20 H 1.48495 * 109.47232 * 89.99663 * 19 17 15 21 21 H 1.48496 * 109.47084 * 210.00169 * 19 17 15 22 22 H 1.48505 * 109.47012 * 329.99925 * 19 17 15 23 23 N 1.36456 * 126.47347 * 179.97438 * 8 6 3 24 24 C 1.46497 * 127.13879 * 0.05808 * 23 8 6 25 25 C 1.53001 * 109.47196 * 270.77356 * 24 23 8 26 26 C 1.52992 * 117.49811 * 241.73132 * 25 24 23 27 27 C 1.52995 * 117.49724 * 173.10734 * 25 24 23 28 28 H 4.18741 * 15.03908 * 0.02562 * 4 2 1 29 29 H 1.09000 * 109.46726 * 300.00405 * 5 3 2 30 30 H 1.09001 * 109.46876 * 59.99882 * 5 3 2 31 31 H 1.09001 * 109.47179 * 179.97438 * 5 3 2 32 32 H 1.09004 * 109.47037 * 296.04920 * 7 6 3 33 33 H 1.09003 * 109.46843 * 56.04127 * 7 6 3 34 34 H 1.08991 * 109.47739 * 176.04412 * 7 6 3 35 35 H 1.09000 * 109.46833 * 175.76466 * 13 12 11 36 36 H 1.08994 * 109.47049 * 295.76315 * 13 12 11 37 37 H 1.08997 * 109.47066 * 55.76917 * 13 12 11 38 38 H 1.09005 * 109.47435 * 303.73787 * 14 12 11 39 39 H 1.09000 * 109.47364 * 63.74314 * 14 12 11 40 40 H 1.09004 * 109.47125 * 183.74392 * 14 12 11 41 41 H 0.97003 * 119.99600 * 180.02562 * 18 17 15 42 42 H 1.09001 * 109.46706 * 30.76981 * 24 23 8 43 43 H 1.08993 * 109.47230 * 150.77261 * 24 23 8 44 44 H 1.09003 * 115.54852 * 27.43706 * 25 24 23 45 45 H 1.09000 * 117.50237 * 359.97438 * 26 25 24 46 46 H 1.08999 * 117.50279 * 145.02135 * 26 25 24 47 47 H 1.09003 * 117.49753 * 214.97492 * 27 25 24 48 48 H 1.09000 * 117.50061 * 0.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 1 3.0093 0.0356 -1.0271 5 6 3.1566 -1.2720 0.6786 6 7 3.1351 1.1761 0.7326 7 6 2.5879 2.4156 0.1649 8 6 4.5204 1.2085 0.7517 9 7 5.3287 0.3321 0.2036 10 7 6.5499 0.6758 0.4097 11 6 6.5929 1.7775 1.1040 12 6 7.8355 2.5016 1.5542 13 6 9.0714 1.7699 1.0268 14 6 7.8784 2.5387 3.0830 15 6 7.8184 3.9099 1.0178 16 1 6.9907 4.2466 0.4112 17 6 8.8624 4.7663 1.2962 18 7 9.8705 4.3560 2.0345 19 14 8.8449 6.5095 0.6250 20 1 8.1747 7.4082 1.5987 21 1 10.2397 6.9694 0.4056 22 1 8.1064 6.5365 -0.6631 23 7 5.3015 2.1584 1.3429 24 6 4.8503 3.3406 2.0811 25 6 4.6725 4.5104 1.1111 26 6 5.5438 5.7487 1.3306 27 6 4.0507 5.7957 1.6609 28 1 -1.0500 0.0005 0.0000 29 1 2.7932 -1.3069 1.7056 30 1 2.7936 -2.1443 0.1349 31 1 4.2466 -1.2717 0.6781 32 1 2.9490 2.5380 -0.8562 33 1 1.4991 2.3639 0.1614 34 1 2.9093 3.2646 0.7682 35 1 9.9667 2.3341 1.2882 36 1 9.1242 0.7772 1.4737 37 1 9.0039 1.6774 -0.0571 38 1 6.9664 3.0009 3.4611 39 1 7.9577 1.5225 3.4691 40 1 8.7416 3.1194 3.4083 41 1 10.6048 4.9587 2.2307 42 1 3.8990 3.1240 2.5673 43 1 5.5922 3.6033 2.8350 44 1 4.4361 4.2368 0.0828 45 1 6.2434 5.7302 2.1663 46 1 5.8810 6.2900 0.4467 47 1 3.4055 6.3679 0.9942 48 1 3.7686 5.8080 2.7137 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001348917250.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:02 Heat of formation + Delta-G solvation = 188.056430 kcal Electronic energy + Delta-G solvation = -28539.636495 eV Core-core repulsion = 25020.882926 eV Total energy + Delta-G solvation = -3518.753568 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.36009 -38.23684 -37.59480 -35.47773 -33.94156 -32.92453 -31.35567 -30.46527 -28.48864 -27.37219 -25.77069 -25.40251 -25.12236 -23.69141 -22.15481 -22.00139 -21.06333 -19.72361 -19.15605 -17.91183 -17.01934 -16.37754 -15.94997 -15.55904 -15.21504 -14.90878 -14.69342 -14.36403 -14.02905 -13.49798 -13.37243 -13.08929 -12.67504 -12.61378 -12.09201 -11.94386 -11.62015 -11.56097 -11.45291 -11.34319 -11.26462 -11.01143 -10.93996 -10.73551 -10.67570 -10.53733 -10.37269 -10.27461 -10.17667 -9.98723 -9.87653 -9.73226 -9.61271 -9.27716 -9.18281 -8.82135 -8.45872 -7.57467 -6.11751 -4.21284 2.30709 2.60318 2.75240 3.08225 3.16368 3.27076 3.27990 3.63731 3.95670 4.09694 4.27226 4.28787 4.90098 4.95397 5.08290 5.14104 5.19690 5.23041 5.34099 5.40081 5.46339 5.49612 5.59868 5.68857 5.73042 5.79738 5.83499 5.87993 5.96474 6.12262 6.18459 6.30397 6.34413 6.46514 6.54906 6.60279 6.65409 6.80200 6.87911 6.92604 7.09080 7.25028 7.31979 7.48736 7.50942 7.60402 7.80742 7.92652 8.07536 8.25364 8.77269 9.42633 9.59401 10.89548 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.017160 B = 0.005060 C = 0.004210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.336869 B = 5532.144122 C = 6649.495924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.169 4.169 3 C 0.209 3.791 4 H 0.078 0.922 5 C -0.151 4.151 6 N -0.446 5.446 7 C 0.009 3.991 8 C 0.321 3.679 9 N -0.329 5.329 10 N -0.314 5.314 11 C 0.250 3.750 12 C 0.145 3.855 13 C -0.118 4.118 14 C -0.134 4.134 15 C -0.505 4.505 16 H 0.069 0.931 17 C 0.072 3.928 18 N -0.881 5.881 19 Si 0.885 3.115 20 H -0.276 1.276 21 H -0.289 1.289 22 H -0.275 1.275 23 N -0.467 5.467 24 C 0.143 3.857 25 C -0.167 4.167 26 C -0.143 4.143 27 C -0.187 4.187 28 H 0.219 0.781 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.102 0.898 32 H 0.036 0.964 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.017 0.983 37 H 0.033 0.967 38 H 0.025 0.975 39 H 0.015 0.985 40 H 0.098 0.902 41 H 0.262 0.738 42 H 0.084 0.916 43 H 0.113 0.887 44 H 0.101 0.899 45 H 0.112 0.888 46 H 0.088 0.912 47 H 0.090 0.910 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.163 -0.545 0.373 14.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.170 4.170 3 C 0.102 3.898 4 H 0.096 0.904 5 C -0.209 4.209 6 N -0.170 5.170 7 C -0.138 4.138 8 C -0.035 4.035 9 N -0.173 5.173 10 N -0.151 5.151 11 C -0.017 4.017 12 C 0.142 3.858 13 C -0.176 4.176 14 C -0.192 4.192 15 C -0.544 4.544 16 H 0.087 0.913 17 C -0.130 4.130 18 N -0.520 5.520 19 Si 0.713 3.287 20 H -0.202 1.202 21 H -0.216 1.216 22 H -0.200 1.200 23 N -0.160 5.160 24 C 0.020 3.980 25 C -0.186 4.186 26 C -0.180 4.180 27 C -0.225 4.225 28 H 0.235 0.765 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.121 0.879 32 H 0.055 0.945 33 H 0.099 0.901 34 H 0.109 0.891 35 H 0.108 0.892 36 H 0.036 0.964 37 H 0.052 0.948 38 H 0.044 0.956 39 H 0.034 0.966 40 H 0.117 0.883 41 H 0.073 0.927 42 H 0.103 0.897 43 H 0.131 0.869 44 H 0.119 0.881 45 H 0.131 0.869 46 H 0.106 0.894 47 H 0.109 0.891 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -13.683 -1.748 0.160 13.795 hybrid contribution -0.619 2.203 -0.517 2.346 sum -14.303 0.456 -0.356 14.314 Atomic orbital electron populations 1.24832 0.95686 1.00005 1.01183 1.22751 0.93785 1.00481 0.99972 1.18401 0.83727 0.90375 0.97249 0.90388 1.22039 1.05115 0.93699 1.00008 1.58660 1.00892 1.04325 1.53122 1.22888 1.00959 0.91209 0.98756 1.22247 0.89440 0.91542 1.00282 1.74350 0.96868 1.24128 1.21959 1.73977 1.10951 1.12444 1.17680 1.26059 0.86025 0.93096 0.96547 1.16926 0.83335 0.92891 0.92671 1.21624 1.00325 0.96850 0.98834 1.21963 1.02254 0.98585 0.96394 1.21152 1.06512 0.94320 1.32397 0.91333 1.24786 0.95164 0.98131 0.94893 1.69787 1.09192 1.35465 1.37521 0.86770 0.77286 0.85064 0.79552 1.20226 1.21558 1.20008 1.46034 1.06657 1.20493 1.42856 1.21525 1.01196 0.81621 0.93638 1.22496 1.06911 0.89539 0.99678 1.23109 0.92035 0.98886 1.03948 1.23095 0.97952 0.99901 1.01507 0.76461 0.92414 0.92020 0.87909 0.94485 0.90081 0.89102 0.89160 0.96370 0.94786 0.95623 0.96550 0.88319 0.92734 0.89731 0.86922 0.88115 0.86928 0.89388 0.89148 0.88806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.06 19.25 29.55 0.57 -1.49 16 2 C -0.17 -2.16 11.08 -37.13 -0.41 -2.57 16 3 C 0.21 3.04 2.20 -70.51 -0.16 2.88 16 4 H 0.08 1.19 8.11 -51.93 -0.42 0.77 16 5 C -0.15 -2.18 8.95 37.16 0.33 -1.85 16 6 N -0.45 -6.98 4.68 -177.98 -0.83 -7.82 16 7 C 0.01 0.12 8.44 60.07 0.51 0.63 16 8 C 0.32 6.07 6.75 -318.87 -2.15 3.91 16 9 N -0.33 -6.97 9.01 30.32 0.27 -6.70 16 10 N -0.31 -7.35 11.49 32.99 0.38 -6.97 16 11 C 0.25 5.60 6.28 -154.02 -0.97 4.63 16 12 C 0.14 3.33 0.51 -156.81 -0.08 3.25 16 13 C -0.12 -2.83 7.81 37.16 0.29 -2.54 16 14 C -0.13 -2.93 8.22 37.15 0.31 -2.62 16 15 C -0.50 -11.86 5.68 -34.44 -0.20 -12.06 16 16 H 0.07 1.61 4.73 -52.49 -0.25 1.36 16 17 C 0.07 1.73 5.13 -17.82 -0.09 1.63 16 18 N -0.88 -21.92 9.31 55.43 0.52 -21.41 16 19 Si 0.88 19.12 26.62 -169.99 -4.53 14.59 16 20 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 21 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 23 N -0.47 -9.01 2.81 -114.09 -0.32 -9.33 16 24 C 0.14 2.32 4.77 -4.04 -0.02 2.30 16 25 C -0.17 -2.54 3.02 -90.63 -0.27 -2.82 16 26 C -0.14 -2.30 6.22 -26.74 -0.17 -2.47 16 27 C -0.19 -2.34 10.25 -26.73 -0.27 -2.61 16 28 H 0.22 1.39 7.80 -54.09 -0.42 0.97 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.10 1.76 5.43 -51.93 -0.28 1.48 16 32 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.08 0.95 6.84 -51.93 -0.36 0.59 16 34 H 0.09 1.18 3.76 -51.93 -0.20 0.99 16 35 H 0.09 2.27 5.96 -51.93 -0.31 1.96 16 36 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.03 0.83 8.13 -51.93 -0.42 0.40 16 38 H 0.02 0.51 5.30 -51.93 -0.28 0.24 16 39 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 40 H 0.10 2.33 5.99 -51.93 -0.31 2.02 16 41 H 0.26 6.36 8.31 -40.82 -0.34 6.02 16 42 H 0.08 1.20 7.62 -51.93 -0.40 0.81 16 43 H 0.11 1.94 4.90 -51.93 -0.25 1.69 16 44 H 0.10 1.63 7.08 -51.93 -0.37 1.26 16 45 H 0.11 1.99 7.08 -51.93 -0.37 1.62 16 46 H 0.09 1.49 7.04 -51.93 -0.37 1.13 16 47 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 48 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 360.87 15.07 5.44 5.44 Total: -1.00 -26.82 360.87 -8.94 -35.76 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -7.09 Total: 8.22 kcal Atomic # 6 Polarization: -9.00 SS G_CDS: -2.78 Total: -11.78 kcal Atomic # 7 Polarization: -52.24 SS G_CDS: 0.02 Total: -52.22 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -4.53 Total: 14.59 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -26.82 -8.94 -35.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348917250.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 223.815 kcal (2) G-P(sol) polarization free energy of solvation -26.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 196.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 188.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds