Wall clock time and date at job start Tue Mar 31 2020 11:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 H 1.09000 * 109.47453 * 91.93822 * 3 2 1 5 5 C 1.53001 * 109.47517 * 331.93862 * 3 2 1 6 6 N 1.46894 * 109.47246 * 211.93846 * 3 2 1 7 7 C 1.46905 * 111.00210 * 303.95359 * 6 3 2 8 8 C 1.38580 * 111.00330 * 180.02562 * 6 3 2 9 9 N 1.31221 * 126.47348 * 0.04685 * 8 6 3 10 10 N 1.28531 * 109.85971 * 179.69460 * 9 8 6 11 11 C 1.30291 * 110.05220 * 0.44809 * 10 9 8 12 12 C 1.50702 * 126.34219 * 179.82501 * 11 10 9 13 13 C 1.52999 * 109.47279 * 2.01265 * 12 11 10 14 14 C 1.52995 * 109.46824 * 242.01026 * 12 11 10 15 15 C 1.50705 * 109.47017 * 122.01391 * 12 11 10 16 16 H 1.07999 * 119.99750 * 359.97438 * 15 12 11 17 17 C 1.37875 * 120.00038 * 180.27376 * 15 12 11 18 18 N 1.31514 * 119.99702 * 359.72403 * 17 15 12 19 19 Si 1.86800 * 120.00107 * 179.72461 * 17 15 12 20 20 H 1.48495 * 109.47232 * 89.99663 * 19 17 15 21 21 H 1.48496 * 109.47084 * 210.00169 * 19 17 15 22 22 H 1.48505 * 109.47012 * 329.99925 * 19 17 15 23 23 N 1.36456 * 126.47347 * 179.97438 * 8 6 3 24 24 C 1.46497 * 127.13879 * 0.05808 * 23 8 6 25 25 C 1.53001 * 109.47196 * 270.77356 * 24 23 8 26 26 C 1.52992 * 117.49811 * 241.73132 * 25 24 23 27 27 C 1.52995 * 117.49724 * 173.10734 * 25 24 23 28 28 H 4.18741 * 15.03908 * 0.02562 * 4 2 1 29 29 H 1.09000 * 109.46726 * 300.00405 * 5 3 2 30 30 H 1.09001 * 109.46876 * 59.99882 * 5 3 2 31 31 H 1.09001 * 109.47179 * 179.97438 * 5 3 2 32 32 H 1.09004 * 109.47037 * 296.04920 * 7 6 3 33 33 H 1.09003 * 109.46843 * 56.04127 * 7 6 3 34 34 H 1.08991 * 109.47739 * 176.04412 * 7 6 3 35 35 H 1.09000 * 109.46833 * 175.76466 * 13 12 11 36 36 H 1.08994 * 109.47049 * 295.76315 * 13 12 11 37 37 H 1.08997 * 109.47066 * 55.76917 * 13 12 11 38 38 H 1.09005 * 109.47435 * 303.73787 * 14 12 11 39 39 H 1.09000 * 109.47364 * 63.74314 * 14 12 11 40 40 H 1.09004 * 109.47125 * 183.74392 * 14 12 11 41 41 H 0.97003 * 119.99600 * 180.02562 * 18 17 15 42 42 H 1.09001 * 109.46706 * 30.76981 * 24 23 8 43 43 H 1.08993 * 109.47230 * 150.77261 * 24 23 8 44 44 H 1.09003 * 115.54852 * 27.43706 * 25 24 23 45 45 H 1.09000 * 117.50237 * 359.97438 * 26 25 24 46 46 H 1.08999 * 117.50279 * 145.02135 * 26 25 24 47 47 H 1.09003 * 117.49753 * 214.97492 * 27 25 24 48 48 H 1.09000 * 117.50061 * 0.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 1 3.0093 0.0356 -1.0271 5 6 3.1566 -1.2720 0.6786 6 7 3.1351 1.1761 0.7326 7 6 2.5879 2.4156 0.1649 8 6 4.5204 1.2085 0.7517 9 7 5.3287 0.3321 0.2036 10 7 6.5499 0.6758 0.4097 11 6 6.5929 1.7775 1.1040 12 6 7.8355 2.5016 1.5542 13 6 9.0714 1.7699 1.0268 14 6 7.8784 2.5387 3.0830 15 6 7.8184 3.9099 1.0178 16 1 6.9907 4.2466 0.4112 17 6 8.8624 4.7663 1.2962 18 7 9.8705 4.3560 2.0345 19 14 8.8449 6.5095 0.6250 20 1 8.1747 7.4082 1.5987 21 1 10.2397 6.9694 0.4056 22 1 8.1064 6.5365 -0.6631 23 7 5.3015 2.1584 1.3429 24 6 4.8503 3.3406 2.0811 25 6 4.6725 4.5104 1.1111 26 6 5.5438 5.7487 1.3306 27 6 4.0507 5.7957 1.6609 28 1 -1.0500 0.0005 0.0000 29 1 2.7932 -1.3069 1.7056 30 1 2.7936 -2.1443 0.1349 31 1 4.2466 -1.2717 0.6781 32 1 2.9490 2.5380 -0.8562 33 1 1.4991 2.3639 0.1614 34 1 2.9093 3.2646 0.7682 35 1 9.9667 2.3341 1.2882 36 1 9.1242 0.7772 1.4737 37 1 9.0039 1.6774 -0.0571 38 1 6.9664 3.0009 3.4611 39 1 7.9577 1.5225 3.4691 40 1 8.7416 3.1194 3.4083 41 1 10.6048 4.9587 2.2307 42 1 3.8990 3.1240 2.5673 43 1 5.5922 3.6033 2.8350 44 1 4.4361 4.2368 0.0828 45 1 6.2434 5.7302 2.1663 46 1 5.8810 6.2900 0.4467 47 1 3.4055 6.3679 0.9942 48 1 3.7686 5.8080 2.7137 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001348917250.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:01 Heat of formation + Delta-G solvation = 176.455667 kcal Electronic energy + Delta-G solvation = -28540.139541 eV Core-core repulsion = 25020.882926 eV Total energy + Delta-G solvation = -3519.256615 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.92299 -39.47577 -38.86493 -37.21209 -35.31748 -34.07991 -33.12158 -31.55840 -30.01795 -28.75603 -27.62729 -27.25522 -26.32793 -24.89012 -23.78810 -23.19353 -22.37568 -21.06356 -20.81861 -18.91268 -18.48389 -17.91542 -17.37276 -16.99819 -16.80366 -16.18603 -15.99599 -15.66277 -15.35595 -15.05328 -14.75725 -14.59355 -14.06427 -13.77239 -13.51769 -13.31359 -13.27760 -12.99884 -12.89136 -12.79416 -12.70470 -12.54618 -12.45629 -12.27342 -12.14466 -12.09494 -11.86743 -11.73326 -11.60842 -11.40485 -11.22875 -11.18681 -11.06581 -10.76901 -10.62368 -10.45508 -10.32465 -9.10611 -7.98056 -6.10834 0.93588 1.28323 1.43207 1.49464 1.53476 1.86622 1.89349 2.02772 2.48087 2.76932 2.91899 3.27714 3.35336 3.61174 3.76700 3.89614 3.96205 4.05577 4.11734 4.17010 4.18984 4.26176 4.33355 4.44845 4.55159 4.62441 4.73408 4.77325 4.83594 4.85723 4.90147 4.96038 5.02567 5.04839 5.09162 5.17101 5.21341 5.28599 5.34917 5.36048 5.41763 5.57364 5.62258 5.66217 5.80837 6.02476 6.16039 6.34296 6.38396 6.64554 6.89587 7.54632 7.97344 9.02713 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.017160 B = 0.005060 C = 0.004210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.336869 B = 5532.144122 C = 6649.495924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.223 4.223 3 C 0.211 3.789 4 H 0.063 0.937 5 C -0.146 4.146 6 N -0.443 5.443 7 C 0.012 3.988 8 C 0.338 3.662 9 N -0.352 5.352 10 N -0.345 5.345 11 C 0.232 3.768 12 C 0.142 3.858 13 C -0.107 4.107 14 C -0.122 4.122 15 C -0.500 4.500 16 H 0.068 0.932 17 C 0.041 3.959 18 N -0.903 5.903 19 Si 0.930 3.070 20 H -0.261 1.261 21 H -0.301 1.301 22 H -0.278 1.278 23 N -0.465 5.465 24 C 0.142 3.858 25 C -0.174 4.174 26 C -0.169 4.169 27 C -0.143 4.143 28 H 0.259 0.741 29 H 0.057 0.943 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.027 0.973 33 H 0.105 0.895 34 H 0.097 0.903 35 H 0.076 0.924 36 H 0.017 0.983 37 H 0.017 0.983 38 H 0.040 0.960 39 H 0.014 0.986 40 H 0.081 0.919 41 H 0.260 0.740 42 H 0.110 0.890 43 H 0.102 0.898 44 H 0.091 0.909 45 H 0.094 0.906 46 H 0.075 0.925 47 H 0.113 0.887 48 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.077 0.555 0.768 18.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.224 4.224 3 C 0.105 3.895 4 H 0.081 0.919 5 C -0.203 4.203 6 N -0.167 5.167 7 C -0.135 4.135 8 C -0.019 4.019 9 N -0.196 5.196 10 N -0.182 5.182 11 C -0.037 4.037 12 C 0.139 3.861 13 C -0.166 4.166 14 C -0.181 4.181 15 C -0.539 4.539 16 H 0.086 0.914 17 C -0.159 4.159 18 N -0.542 5.542 19 Si 0.758 3.242 20 H -0.186 1.186 21 H -0.228 1.228 22 H -0.204 1.204 23 N -0.158 5.158 24 C 0.020 3.980 25 C -0.193 4.193 26 C -0.206 4.206 27 C -0.180 4.180 28 H 0.275 0.725 29 H 0.076 0.924 30 H 0.097 0.903 31 H 0.091 0.909 32 H 0.046 0.954 33 H 0.123 0.877 34 H 0.115 0.885 35 H 0.095 0.905 36 H 0.036 0.964 37 H 0.036 0.964 38 H 0.059 0.941 39 H 0.033 0.967 40 H 0.100 0.900 41 H 0.070 0.930 42 H 0.128 0.872 43 H 0.120 0.880 44 H 0.109 0.891 45 H 0.112 0.888 46 H 0.094 0.906 47 H 0.132 0.868 48 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -17.624 -0.636 0.561 17.645 hybrid contribution 0.453 1.798 -0.659 1.968 sum -17.171 1.163 -0.098 17.210 Atomic orbital electron populations 1.25734 0.96279 0.96779 0.97991 1.22494 0.93554 1.03446 1.02881 1.18255 0.85541 0.89601 0.96115 0.91897 1.21943 1.03094 0.94876 1.00410 1.58824 0.98552 1.05863 1.53478 1.22955 1.02224 0.90157 0.98140 1.22600 0.90700 0.90240 0.98367 1.74317 0.96467 1.25329 1.23488 1.73887 1.12485 1.13320 1.18530 1.25769 0.87006 0.93392 0.97564 1.16857 0.83355 0.92682 0.93213 1.21489 1.00614 0.96775 0.97697 1.21805 1.02248 0.98280 0.95718 1.21215 1.06307 0.94441 1.31889 0.91443 1.25246 0.94984 1.00515 0.95149 1.69890 1.09591 1.36184 1.38503 0.86051 0.76427 0.82505 0.79199 1.18566 1.22766 1.20355 1.46123 1.05669 1.21238 1.42789 1.21722 1.01822 0.80966 0.93487 1.22387 1.08048 0.89695 0.99190 1.22979 0.94337 1.00169 1.03108 1.23210 0.95115 0.96560 1.03127 0.72510 0.92357 0.90286 0.90867 0.95397 0.87692 0.88466 0.90530 0.96384 0.96367 0.94085 0.96661 0.89993 0.92986 0.87164 0.88039 0.89099 0.88797 0.90631 0.86829 0.86618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.43 19.25 74.32 1.43 -1.00 16 2 C -0.22 -5.06 11.08 31.12 0.34 -4.72 16 3 C 0.21 5.93 2.20 43.11 0.09 6.02 16 4 H 0.06 1.93 8.11 -2.39 -0.02 1.91 16 5 C -0.15 -4.16 8.95 71.98 0.64 -3.52 16 6 N -0.44 -13.25 4.68 -717.01 -3.35 -16.60 16 7 C 0.01 0.29 8.44 127.69 1.08 1.36 16 8 C 0.34 12.71 6.75 260.11 1.76 14.46 16 9 N -0.35 -15.31 9.01 -58.00 -0.52 -15.83 16 10 N -0.35 -16.71 11.49 -49.54 -0.57 -17.27 16 11 C 0.23 10.58 6.28 137.64 0.86 11.44 16 12 C 0.14 6.69 0.51 -53.67 -0.03 6.66 16 13 C -0.11 -5.35 7.81 71.98 0.56 -4.79 16 14 C -0.12 -5.44 8.22 71.98 0.59 -4.85 16 15 C -0.50 -23.83 5.68 25.60 0.15 -23.69 16 16 H 0.07 3.21 4.73 -2.91 -0.01 3.19 16 17 C 0.04 1.98 5.13 84.65 0.43 2.41 16 18 N -0.90 -45.84 9.31 21.45 0.20 -45.64 16 19 Si 0.93 39.49 26.62 68.60 1.83 41.32 16 20 H -0.26 -10.32 7.11 99.48 0.71 -9.62 16 21 H -0.30 -13.25 7.11 99.48 0.71 -12.55 16 22 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 23 N -0.47 -17.82 2.81 -514.86 -1.44 -19.26 16 24 C 0.14 4.37 4.77 86.38 0.41 4.78 16 25 C -0.17 -4.96 3.02 -10.80 -0.03 -5.00 16 26 C -0.17 -5.18 6.22 30.59 0.19 -4.99 16 27 C -0.14 -3.03 10.25 30.59 0.31 -2.72 16 28 H 0.26 1.69 7.80 -4.42 -0.03 1.66 16 29 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.07 2.57 5.43 -2.39 -0.01 2.55 16 32 H 0.03 0.73 8.14 -2.38 -0.02 0.71 16 33 H 0.10 2.08 6.84 -2.39 -0.02 2.06 16 34 H 0.10 2.24 3.76 -2.39 -0.01 2.23 16 35 H 0.08 4.00 5.96 -2.39 -0.01 3.99 16 36 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.02 0.90 8.13 -2.39 -0.02 0.88 16 38 H 0.04 1.65 5.30 -2.38 -0.01 1.64 16 39 H 0.01 0.63 8.14 -2.39 -0.02 0.62 16 40 H 0.08 3.94 5.99 -2.38 -0.01 3.93 16 41 H 0.26 12.87 8.31 -92.71 -0.77 12.10 16 42 H 0.11 2.81 7.62 -2.39 -0.02 2.79 16 43 H 0.10 3.38 4.90 -2.39 -0.01 3.37 16 44 H 0.09 2.81 7.08 -2.39 -0.02 2.79 16 45 H 0.09 3.24 7.08 -2.39 -0.02 3.23 16 46 H 0.08 2.48 7.04 -2.39 -0.02 2.47 16 47 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 48 H 0.12 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -60.27 360.87 5.91 -54.37 By element: Atomic # 1 Polarization: 26.07 SS G_CDS: 0.97 Total: 27.03 kcal Atomic # 6 Polarization: -16.92 SS G_CDS: 8.80 Total: -8.12 kcal Atomic # 7 Polarization: -108.92 SS G_CDS: -5.69 Total: -114.61 kcal Atomic # 14 Polarization: 39.49 SS G_CDS: 1.83 Total: 41.32 kcal Total: -60.27 5.91 -54.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348917250.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 230.822 kcal (2) G-P(sol) polarization free energy of solvation -60.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 170.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 176.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds