Wall clock time and date at job start Tue Mar 31 2020 12:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.36743 * 127.13850 * 2 1 4 4 C 1.50699 * 126.34579 * 359.95897 * 3 2 1 5 5 H 1.09000 * 109.64063 * 359.87456 * 4 3 2 6 6 C 1.53021 * 109.63930 * 120.29121 * 4 3 2 7 7 C 1.50073 * 110.14803 * 169.12165 * 6 4 3 8 8 C 1.29446 * 124.07101 * 342.86681 * 7 6 4 9 9 C 1.50063 * 124.07745 * 0.49481 * 8 7 6 10 10 C 1.53045 * 110.13853 * 342.82825 * 9 8 7 11 11 N 1.30292 * 107.30500 * 180.22658 * 3 2 1 12 12 N 1.28534 * 110.05682 * 359.77027 * 11 3 2 13 13 C 1.31215 * 109.85436 * 0.02562 * 12 11 3 14 14 N 1.38585 * 126.46879 * 179.97438 * 13 12 11 15 15 C 1.46830 * 110.98404 * 124.23767 * 14 13 12 16 16 C 1.53038 * 109.51757 * 174.15531 * 15 14 13 17 17 C 1.53127 * 109.27941 * 59.17550 * 16 15 14 18 18 C 1.53117 * 109.15989 * 302.34585 * 17 16 15 19 19 H 1.09000 * 109.54064 * 297.69613 * 18 17 16 20 20 C 1.50705 * 109.50456 * 177.59116 * 18 17 16 21 21 H 1.07995 * 119.99963 * 240.20104 * 20 18 17 22 22 C 1.37874 * 119.99203 * 60.19994 * 20 18 17 23 23 N 1.31513 * 120.00791 * 359.97438 * 22 20 18 24 24 Si 1.86806 * 119.99676 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47399 * 59.99529 * 24 22 20 26 26 H 1.48495 * 109.47390 * 179.97438 * 24 22 20 27 27 H 1.48505 * 109.46925 * 299.99946 * 24 22 20 28 28 C 1.46847 * 111.00118 * 0.02562 * 14 13 12 29 29 H 1.09001 * 109.47518 * 270.17796 * 1 2 3 30 30 H 1.09006 * 109.47130 * 30.17840 * 1 2 3 31 31 H 1.08998 * 109.47282 * 150.17777 * 1 2 3 32 32 H 1.09010 * 109.36002 * 289.32449 * 6 4 3 33 33 H 1.09002 * 109.36143 * 49.04841 * 6 4 3 34 34 H 1.07997 * 117.96117 * 162.88800 * 7 6 4 35 35 H 1.08002 * 117.95474 * 180.46781 * 8 7 6 36 36 H 1.09000 * 109.36077 * 103.05247 * 9 8 7 37 37 H 1.09001 * 109.35484 * 222.77851 * 9 8 7 38 38 H 1.09003 * 109.65850 * 289.77664 * 10 9 8 39 39 H 1.09002 * 109.63037 * 169.14406 * 10 9 8 40 40 H 1.08995 * 109.46742 * 54.13767 * 15 14 13 41 41 H 1.09004 * 109.45381 * 294.16102 * 15 14 13 42 42 H 1.08997 * 109.50308 * 299.23764 * 16 15 14 43 43 H 1.09000 * 109.50697 * 179.11489 * 16 15 14 44 44 H 1.08997 * 109.52581 * 182.44219 * 17 16 15 45 45 H 1.08998 * 109.57452 * 62.28001 * 17 16 15 46 46 H 0.96999 * 120.00667 * 179.97438 * 23 22 20 47 47 H 1.09002 * 109.46448 * 65.82249 * 28 14 13 48 48 H 1.08994 * 109.45958 * 305.84614 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2905 1.0901 0.0000 4 6 1.8621 2.5349 -0.0009 5 1 0.7737 2.5943 -0.0038 6 6 2.4121 3.2352 1.2436 7 6 2.2230 4.7194 1.1276 8 6 1.9745 5.3341 0.0158 9 6 1.8302 4.6473 -1.3106 10 6 2.4247 3.2388 -1.2421 11 7 3.5161 0.6480 -0.0049 12 7 3.5212 -0.6373 -0.0032 13 6 2.2888 -1.0878 0.0025 14 7 1.8977 -2.4173 0.0054 15 6 1.0141 -2.7030 1.1428 16 6 0.4871 -4.1356 1.0336 17 6 1.6687 -5.1096 1.0237 18 6 2.5985 -4.7598 -0.1415 19 1 2.0632 -4.8787 -1.0835 20 6 3.7947 -5.6764 -0.1233 21 1 4.7881 -5.2657 -0.0198 22 6 3.6205 -7.0392 -0.2387 23 7 2.4107 -7.5393 -0.3641 24 14 5.1031 -8.1755 -0.2154 25 1 5.8303 -8.0142 1.0692 26 1 4.6503 -9.5829 -0.3540 27 1 6.0072 -7.8326 -1.3424 28 6 3.0644 -3.3090 0.0019 29 1 -0.3634 0.0032 1.0276 30 1 -0.3634 0.8884 -0.5166 31 1 -0.3634 -0.8915 -0.5111 32 1 1.8847 2.8717 2.1256 33 1 3.4751 3.0150 1.3420 34 1 2.2994 5.3115 2.0275 35 1 1.8637 6.4080 0.0448 36 1 0.7737 4.5816 -1.5705 37 1 2.3550 5.2219 -2.0739 38 1 3.5103 3.3022 -1.1670 39 1 2.1483 2.6807 -2.1367 40 1 0.1761 -2.0062 1.1357 41 1 1.5717 -2.5910 2.0727 42 1 -0.0820 -4.2446 0.1104 43 1 -0.1563 -4.3527 1.8862 44 1 1.3001 -6.1282 0.9024 45 1 2.2158 -5.0296 1.9630 46 1 2.2882 -8.4981 -0.4457 47 1 3.6121 -3.1942 0.9373 48 1 3.7152 -3.0523 -0.8338 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350567547.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:56 Heat of formation + Delta-G solvation = 87.658352 kcal Electronic energy + Delta-G solvation = -26954.357647 eV Core-core repulsion = 23431.250491 eV Total energy + Delta-G solvation = -3523.107155 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.78084 -38.87049 -38.25821 -34.94063 -33.92069 -32.44371 -31.56408 -31.03150 -30.00953 -28.08398 -27.55712 -25.12301 -23.91609 -23.77909 -23.08691 -21.65710 -20.82773 -20.21640 -18.75802 -17.92746 -17.32344 -16.48135 -16.18552 -16.14866 -15.53281 -14.94714 -14.52677 -14.28737 -14.09872 -13.99133 -13.66008 -13.37366 -13.19953 -12.95225 -12.82655 -12.62914 -12.60198 -12.50728 -12.43569 -11.88915 -11.27561 -11.17023 -11.01430 -10.93336 -10.83325 -10.73421 -10.58739 -10.27657 -10.20317 -10.00779 -9.92271 -9.66460 -9.38735 -9.24881 -9.21329 -8.78014 -8.32911 -7.76133 -6.00836 -4.06374 1.95611 2.05406 2.41344 3.12148 3.34193 3.37874 3.41971 4.04344 4.18113 4.45028 4.46433 4.50356 4.60114 4.73471 4.93891 4.99740 5.05251 5.10248 5.17489 5.23516 5.28687 5.30228 5.40025 5.43918 5.49128 5.60563 5.70102 5.74641 5.78845 5.86584 5.92054 5.96514 6.16561 6.18207 6.31819 6.36878 6.41631 6.46235 6.60796 6.67418 6.80242 6.88349 7.00837 7.23557 7.35417 7.65576 7.72291 7.97505 8.08252 8.40858 8.96689 9.09042 9.58283 11.05677 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.028403 B = 0.002799 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.591189 B =10001.131826 C =10526.788976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.489 5.489 3 C 0.159 3.841 4 C 0.012 3.988 5 H 0.083 0.917 6 C -0.082 4.082 7 C -0.149 4.149 8 C -0.160 4.160 9 C -0.090 4.090 10 C -0.108 4.108 11 N -0.277 5.277 12 N -0.325 5.325 13 C 0.377 3.623 14 N -0.451 5.451 15 C 0.059 3.941 16 C -0.116 4.116 17 C -0.115 4.115 18 C 0.055 3.945 19 H 0.036 0.964 20 C -0.513 4.513 21 H 0.057 0.943 22 C 0.064 3.936 23 N -0.890 5.890 24 Si 0.893 3.107 25 H -0.277 1.277 26 H -0.288 1.288 27 H -0.276 1.276 28 C 0.084 3.916 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.096 0.904 32 H 0.071 0.929 33 H 0.089 0.911 34 H 0.105 0.895 35 H 0.103 0.897 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.067 0.933 40 H 0.063 0.937 41 H 0.040 0.960 42 H 0.065 0.935 43 H 0.056 0.944 44 H 0.096 0.904 45 H 0.035 0.965 46 H 0.261 0.739 47 H 0.041 0.959 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.700 21.974 2.134 23.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.186 5.186 3 C -0.108 4.108 4 C -0.009 4.009 5 H 0.102 0.898 6 C -0.119 4.119 7 C -0.167 4.167 8 C -0.178 4.178 9 C -0.127 4.127 10 C -0.146 4.146 11 N -0.116 5.116 12 N -0.170 5.170 13 C 0.021 3.979 14 N -0.175 5.175 15 C -0.067 4.067 16 C -0.154 4.154 17 C -0.153 4.153 18 C 0.036 3.964 19 H 0.054 0.946 20 C -0.552 4.552 21 H 0.075 0.925 22 C -0.137 4.137 23 N -0.529 5.529 24 Si 0.721 3.279 25 H -0.203 1.203 26 H -0.213 1.213 27 H -0.202 1.202 28 C -0.041 4.041 29 H 0.094 0.906 30 H 0.105 0.895 31 H 0.115 0.885 32 H 0.090 0.910 33 H 0.108 0.892 34 H 0.123 0.877 35 H 0.121 0.879 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.098 0.902 39 H 0.086 0.914 40 H 0.081 0.919 41 H 0.058 0.942 42 H 0.083 0.917 43 H 0.075 0.925 44 H 0.115 0.885 45 H 0.054 0.946 46 H 0.071 0.929 47 H 0.059 0.941 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.563 21.638 1.688 22.983 hybrid contribution -0.424 -0.551 0.666 0.963 sum -7.986 21.087 2.354 22.671 Atomic orbital electron populations 1.22072 0.76125 1.05069 1.03448 1.46023 1.08251 1.05933 1.58371 1.24430 0.87296 0.90806 1.08308 1.19492 0.99999 0.84295 0.97138 0.89828 1.20477 1.02850 0.92046 0.96573 1.22031 1.00795 0.95835 0.98058 1.22047 1.01700 0.99541 0.94515 1.20477 1.01179 0.95357 0.95690 1.21626 1.01842 0.94718 0.96463 1.73880 1.17148 1.03398 1.17141 1.74737 1.15459 1.02502 1.24295 1.23107 0.86333 0.87897 1.00544 1.58856 1.21298 0.96092 1.41243 1.22317 0.94915 0.99413 0.90102 1.21716 0.99788 0.92782 1.01131 1.21730 0.94406 1.00390 0.98756 1.18748 0.95166 0.87178 0.95350 0.94569 1.21050 0.92696 0.91172 1.50278 0.92460 1.24910 0.95780 0.98104 0.94935 1.69863 1.20487 1.12537 1.50028 0.86639 0.83008 0.79554 0.78711 1.20272 1.21344 1.20179 1.22417 0.87504 0.92950 1.01247 0.90583 0.89533 0.88542 0.91026 0.89228 0.87683 0.87932 0.90905 0.90634 0.90238 0.91447 0.91879 0.94175 0.91669 0.92532 0.88545 0.94619 0.92944 0.94108 0.90557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.73 9.15 59.84 0.55 1.27 16 2 N -0.49 -7.08 3.21 -121.46 -0.39 -7.47 16 3 C 0.16 2.30 6.58 -154.01 -1.01 1.29 16 4 C 0.01 0.12 2.61 -91.56 -0.24 -0.12 16 5 H 0.08 0.69 6.94 -51.93 -0.36 0.33 16 6 C -0.08 -0.78 5.42 -28.17 -0.15 -0.94 16 7 C -0.15 -1.19 9.80 -35.90 -0.35 -1.55 16 8 C -0.16 -1.18 9.80 -35.90 -0.35 -1.54 16 9 C -0.09 -0.65 6.12 -28.17 -0.17 -0.82 16 10 C -0.11 -1.03 5.29 -26.51 -0.14 -1.17 16 11 N -0.28 -5.07 12.13 32.99 0.40 -4.67 16 12 N -0.33 -6.71 11.24 30.32 0.34 -6.37 16 13 C 0.38 6.97 7.21 -318.87 -2.30 4.68 16 14 N -0.45 -8.61 4.70 -174.56 -0.82 -9.43 16 15 C 0.06 0.98 5.28 -3.84 -0.02 0.96 16 16 C -0.12 -2.06 6.09 -26.65 -0.16 -2.22 16 17 C -0.11 -2.59 5.03 -26.61 -0.13 -2.72 16 18 C 0.05 1.34 2.26 -91.69 -0.21 1.14 16 19 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 20 C -0.51 -14.01 8.56 -34.44 -0.29 -14.30 16 21 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 22 C 0.06 1.75 5.31 -17.82 -0.09 1.66 16 23 N -0.89 -24.87 11.36 55.43 0.63 -24.24 16 24 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 27 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 28 C 0.08 1.87 4.11 -3.83 -0.02 1.85 16 29 H 0.08 0.60 7.75 -51.93 -0.40 0.20 16 30 H 0.09 0.60 7.24 -51.93 -0.38 0.22 16 31 H 0.10 0.95 7.65 -51.93 -0.40 0.56 16 32 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16 33 H 0.09 1.02 8.05 -51.93 -0.42 0.60 16 34 H 0.11 0.71 8.06 -52.49 -0.42 0.29 16 35 H 0.10 0.62 8.06 -52.49 -0.42 0.20 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.08 0.87 8.12 -51.93 -0.42 0.45 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.06 0.84 5.23 -51.93 -0.27 0.57 16 41 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.10 2.43 6.16 -51.93 -0.32 2.11 16 45 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 47 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 48 H 0.08 1.80 7.92 -51.93 -0.41 1.39 16 LS Contribution 370.77 15.07 5.59 5.59 Total: -1.00 -31.00 370.77 -12.37 -43.37 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -7.99 Total: -0.50 kcal Atomic # 6 Polarization: -7.43 SS G_CDS: -5.10 Total: -12.54 kcal Atomic # 7 Polarization: -52.34 SS G_CDS: 0.16 Total: -52.18 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.00 -12.37 -43.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350567547.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.028 kcal (2) G-P(sol) polarization free energy of solvation -31.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds