Wall clock time and date at job start Tue Mar 31 2020 12:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.36743 * 127.13850 * 2 1 4 4 C 1.50699 * 126.34579 * 359.95897 * 3 2 1 5 5 H 1.09000 * 109.64063 * 359.87456 * 4 3 2 6 6 C 1.53021 * 109.63930 * 120.29121 * 4 3 2 7 7 C 1.50073 * 110.14803 * 169.12165 * 6 4 3 8 8 C 1.29446 * 124.07101 * 342.86681 * 7 6 4 9 9 C 1.50063 * 124.07745 * 0.49481 * 8 7 6 10 10 C 1.53045 * 110.13853 * 342.82825 * 9 8 7 11 11 N 1.30292 * 107.30500 * 180.22658 * 3 2 1 12 12 N 1.28534 * 110.05682 * 359.77027 * 11 3 2 13 13 C 1.31215 * 109.85436 * 0.02562 * 12 11 3 14 14 N 1.38585 * 126.46879 * 179.97438 * 13 12 11 15 15 C 1.46830 * 110.98404 * 124.23767 * 14 13 12 16 16 C 1.53038 * 109.51757 * 174.15531 * 15 14 13 17 17 C 1.53127 * 109.27941 * 59.17550 * 16 15 14 18 18 C 1.53117 * 109.15989 * 302.34585 * 17 16 15 19 19 H 1.09000 * 109.54064 * 297.69613 * 18 17 16 20 20 C 1.50705 * 109.50456 * 177.59116 * 18 17 16 21 21 H 1.07995 * 119.99963 * 240.20104 * 20 18 17 22 22 C 1.37874 * 119.99203 * 60.19994 * 20 18 17 23 23 N 1.31513 * 120.00791 * 359.97438 * 22 20 18 24 24 Si 1.86806 * 119.99676 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47399 * 59.99529 * 24 22 20 26 26 H 1.48495 * 109.47390 * 179.97438 * 24 22 20 27 27 H 1.48505 * 109.46925 * 299.99946 * 24 22 20 28 28 C 1.46847 * 111.00118 * 0.02562 * 14 13 12 29 29 H 1.09001 * 109.47518 * 270.17796 * 1 2 3 30 30 H 1.09006 * 109.47130 * 30.17840 * 1 2 3 31 31 H 1.08998 * 109.47282 * 150.17777 * 1 2 3 32 32 H 1.09010 * 109.36002 * 289.32449 * 6 4 3 33 33 H 1.09002 * 109.36143 * 49.04841 * 6 4 3 34 34 H 1.07997 * 117.96117 * 162.88800 * 7 6 4 35 35 H 1.08002 * 117.95474 * 180.46781 * 8 7 6 36 36 H 1.09000 * 109.36077 * 103.05247 * 9 8 7 37 37 H 1.09001 * 109.35484 * 222.77851 * 9 8 7 38 38 H 1.09003 * 109.65850 * 289.77664 * 10 9 8 39 39 H 1.09002 * 109.63037 * 169.14406 * 10 9 8 40 40 H 1.08995 * 109.46742 * 54.13767 * 15 14 13 41 41 H 1.09004 * 109.45381 * 294.16102 * 15 14 13 42 42 H 1.08997 * 109.50308 * 299.23764 * 16 15 14 43 43 H 1.09000 * 109.50697 * 179.11489 * 16 15 14 44 44 H 1.08997 * 109.52581 * 182.44219 * 17 16 15 45 45 H 1.08998 * 109.57452 * 62.28001 * 17 16 15 46 46 H 0.96999 * 120.00667 * 179.97438 * 23 22 20 47 47 H 1.09002 * 109.46448 * 65.82249 * 28 14 13 48 48 H 1.08994 * 109.45958 * 305.84614 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2905 1.0901 0.0000 4 6 1.8621 2.5349 -0.0009 5 1 0.7737 2.5943 -0.0038 6 6 2.4121 3.2352 1.2436 7 6 2.2230 4.7194 1.1276 8 6 1.9745 5.3341 0.0158 9 6 1.8302 4.6473 -1.3106 10 6 2.4247 3.2388 -1.2421 11 7 3.5161 0.6480 -0.0049 12 7 3.5212 -0.6373 -0.0032 13 6 2.2888 -1.0878 0.0025 14 7 1.8977 -2.4173 0.0054 15 6 1.0141 -2.7030 1.1428 16 6 0.4871 -4.1356 1.0336 17 6 1.6687 -5.1096 1.0237 18 6 2.5985 -4.7598 -0.1415 19 1 2.0632 -4.8787 -1.0835 20 6 3.7947 -5.6764 -0.1233 21 1 4.7881 -5.2657 -0.0198 22 6 3.6205 -7.0392 -0.2387 23 7 2.4107 -7.5393 -0.3641 24 14 5.1031 -8.1755 -0.2154 25 1 5.8303 -8.0142 1.0692 26 1 4.6503 -9.5829 -0.3540 27 1 6.0072 -7.8326 -1.3424 28 6 3.0644 -3.3090 0.0019 29 1 -0.3634 0.0032 1.0276 30 1 -0.3634 0.8884 -0.5166 31 1 -0.3634 -0.8915 -0.5111 32 1 1.8847 2.8717 2.1256 33 1 3.4751 3.0150 1.3420 34 1 2.2994 5.3115 2.0275 35 1 1.8637 6.4080 0.0448 36 1 0.7737 4.5816 -1.5705 37 1 2.3550 5.2219 -2.0739 38 1 3.5103 3.3022 -1.1670 39 1 2.1483 2.6807 -2.1367 40 1 0.1761 -2.0062 1.1357 41 1 1.5717 -2.5910 2.0727 42 1 -0.0820 -4.2446 0.1104 43 1 -0.1563 -4.3527 1.8862 44 1 1.3001 -6.1282 0.9024 45 1 2.2158 -5.0296 1.9630 46 1 2.2882 -8.4981 -0.4457 47 1 3.6121 -3.1942 0.9373 48 1 3.7152 -3.0523 -0.8338 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350567547.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:56 Heat of formation + Delta-G solvation = 72.513975 kcal Electronic energy + Delta-G solvation = -26955.014356 eV Core-core repulsion = 23431.250491 eV Total energy + Delta-G solvation = -3523.763865 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.05338 -40.11737 -39.32602 -36.21677 -35.58122 -33.90503 -32.72357 -31.83271 -31.69650 -29.33377 -28.50485 -27.07465 -25.36333 -24.84544 -23.86844 -23.22428 -22.20637 -21.32076 -20.45098 -18.86366 -18.60973 -17.95014 -17.38420 -17.13644 -16.94161 -16.49222 -15.96394 -15.58474 -15.40741 -14.85906 -14.73992 -14.52326 -14.40559 -14.25262 -14.13876 -13.94875 -13.75618 -13.45108 -13.25678 -13.16003 -12.87560 -12.74404 -12.63398 -12.51994 -11.98546 -11.93214 -11.85194 -11.82370 -11.56663 -11.31869 -11.25275 -11.18983 -11.07788 -10.84913 -10.62490 -10.39854 -9.83248 -9.21276 -8.11577 -6.24518 0.75454 1.24702 1.41707 1.42509 1.46189 1.50547 1.80702 2.41429 2.71546 3.16120 3.25497 3.61170 3.72137 3.79492 3.88503 4.02806 4.05064 4.09367 4.28705 4.30048 4.35171 4.37861 4.42001 4.44593 4.48681 4.56130 4.63032 4.68937 4.73773 4.77867 4.88659 4.96120 4.96800 5.00382 5.03792 5.06134 5.09985 5.26069 5.26757 5.38558 5.43580 5.60454 5.64729 5.72055 5.80683 5.96631 6.09648 6.10218 6.25597 6.35745 6.83576 7.42818 7.77990 8.93322 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.028403 B = 0.002799 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.591189 B =10001.131826 C =10526.788976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.481 5.481 3 C 0.184 3.816 4 C 0.013 3.987 5 H 0.116 0.884 6 C -0.078 4.078 7 C -0.160 4.160 8 C -0.154 4.154 9 C -0.086 4.086 10 C -0.107 4.107 11 N -0.320 5.320 12 N -0.372 5.372 13 C 0.359 3.641 14 N -0.452 5.452 15 C 0.062 3.938 16 C -0.106 4.106 17 C -0.108 4.108 18 C 0.057 3.943 19 H 0.006 0.994 20 C -0.540 4.540 21 H 0.045 0.955 22 C 0.022 3.978 23 N -0.910 5.910 24 Si 0.952 3.048 25 H -0.273 1.273 26 H -0.279 1.279 27 H -0.275 1.275 28 C 0.107 3.893 29 H 0.102 0.898 30 H 0.121 0.879 31 H 0.095 0.905 32 H 0.077 0.923 33 H 0.063 0.937 34 H 0.118 0.882 35 H 0.121 0.879 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.056 0.944 39 H 0.062 0.938 40 H 0.107 0.893 41 H 0.033 0.967 42 H 0.065 0.935 43 H 0.089 0.911 44 H 0.069 0.931 45 H 0.025 0.975 46 H 0.263 0.737 47 H 0.024 0.976 48 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.192 24.337 2.615 26.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.176 5.176 3 C -0.085 4.085 4 C -0.007 4.007 5 H 0.134 0.866 6 C -0.116 4.116 7 C -0.178 4.178 8 C -0.172 4.172 9 C -0.123 4.123 10 C -0.146 4.146 11 N -0.158 5.158 12 N -0.217 5.217 13 C 0.002 3.998 14 N -0.176 5.176 15 C -0.064 4.064 16 C -0.143 4.143 17 C -0.146 4.146 18 C 0.038 3.962 19 H 0.024 0.976 20 C -0.579 4.579 21 H 0.064 0.936 22 C -0.178 4.178 23 N -0.549 5.549 24 Si 0.777 3.223 25 H -0.198 1.198 26 H -0.204 1.204 27 H -0.201 1.201 28 C -0.020 4.020 29 H 0.120 0.880 30 H 0.139 0.861 31 H 0.114 0.886 32 H 0.095 0.905 33 H 0.081 0.919 34 H 0.135 0.865 35 H 0.139 0.861 36 H 0.111 0.889 37 H 0.103 0.897 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.125 0.875 41 H 0.051 0.949 42 H 0.084 0.916 43 H 0.108 0.892 44 H 0.088 0.912 45 H 0.044 0.956 46 H 0.072 0.928 47 H 0.042 0.958 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.082 24.023 2.171 26.143 hybrid contribution 0.329 -1.180 0.479 1.315 sum -9.753 22.843 2.650 24.979 Atomic orbital electron populations 1.22561 0.72837 1.06875 1.05733 1.46261 1.10004 1.04339 1.57034 1.25277 0.86340 0.92377 1.04497 1.19792 1.01830 0.81349 0.97769 0.86610 1.20402 1.01276 0.93503 0.96445 1.22013 1.02065 0.94684 0.99085 1.22256 1.00358 1.00510 0.94093 1.20498 1.02267 0.93473 0.96063 1.21594 1.00667 0.96432 0.95862 1.73797 1.19639 1.02599 1.19808 1.74609 1.17516 1.03966 1.25613 1.22935 0.86871 0.88244 1.01789 1.58780 1.19894 0.96225 1.42679 1.22417 0.95575 0.99581 0.88857 1.21609 0.97965 0.92116 1.02652 1.21525 0.95729 1.00369 0.97027 1.18626 0.94548 0.88274 0.94778 0.97590 1.21370 0.93202 0.92341 1.50984 0.93622 1.25603 0.98377 0.99301 0.94502 1.69974 1.21919 1.12852 1.50123 0.85714 0.79922 0.77944 0.78697 1.19834 1.20359 1.20051 1.21880 0.88364 0.92492 0.99257 0.87963 0.86076 0.88593 0.90467 0.91878 0.86453 0.86072 0.88909 0.89650 0.92500 0.91930 0.87513 0.94878 0.91605 0.89211 0.91246 0.95618 0.92772 0.95758 0.92998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.91 9.15 127.77 1.17 2.08 16 2 N -0.48 -13.03 3.21 -538.19 -1.73 -14.75 16 3 C 0.18 5.12 6.58 137.64 0.91 6.03 16 4 C 0.01 0.24 2.61 -11.40 -0.03 0.21 16 5 H 0.12 1.38 6.94 -2.39 -0.02 1.36 16 6 C -0.08 -1.37 5.42 29.66 0.16 -1.21 16 7 C -0.16 -2.15 9.80 27.04 0.27 -1.88 16 8 C -0.15 -1.76 9.80 27.03 0.27 -1.49 16 9 C -0.09 -0.96 6.12 29.66 0.18 -0.78 16 10 C -0.11 -1.86 5.29 30.74 0.16 -1.69 16 11 N -0.32 -12.05 12.13 -49.54 -0.60 -12.65 16 12 N -0.37 -16.00 11.24 -58.00 -0.65 -16.65 16 13 C 0.36 13.35 7.21 260.11 1.88 15.22 16 14 N -0.45 -17.40 4.70 -706.18 -3.32 -20.72 16 15 C 0.06 1.95 5.28 86.33 0.46 2.40 16 16 C -0.11 -3.61 6.09 30.65 0.19 -3.43 16 17 C -0.11 -4.99 5.03 30.68 0.15 -4.84 16 18 C 0.06 2.93 2.26 -11.48 -0.03 2.90 16 19 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 20 C -0.54 -30.86 8.56 25.60 0.22 -30.64 16 21 H 0.05 2.63 7.74 -2.91 -0.02 2.61 16 22 C 0.02 1.22 5.31 84.65 0.45 1.66 16 23 N -0.91 -51.99 11.36 21.45 0.24 -51.74 16 24 Si 0.95 44.49 29.54 68.60 2.03 46.52 16 25 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 26 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 27 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 28 C 0.11 5.01 4.11 86.33 0.35 5.37 16 29 H 0.10 1.07 7.75 -2.39 -0.02 1.05 16 30 H 0.12 1.02 7.24 -2.38 -0.02 1.00 16 31 H 0.10 1.53 7.65 -2.39 -0.02 1.51 16 32 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 33 H 0.06 1.44 8.05 -2.39 -0.02 1.43 16 34 H 0.12 1.28 8.06 -2.91 -0.02 1.26 16 35 H 0.12 0.99 8.06 -2.91 -0.02 0.96 16 36 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.06 1.24 8.12 -2.39 -0.02 1.22 16 39 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.11 2.45 5.23 -2.39 -0.01 2.44 16 41 H 0.03 1.10 8.14 -2.38 -0.02 1.08 16 42 H 0.07 2.26 8.14 -2.39 -0.02 2.25 16 43 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 44 H 0.07 3.58 6.16 -2.39 -0.01 3.57 16 45 H 0.02 1.19 8.14 -2.39 -0.02 1.17 16 46 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 47 H 0.02 1.19 8.14 -2.39 -0.02 1.17 16 48 H 0.05 2.63 7.92 -2.39 -0.02 2.61 16 Total: -1.00 -72.55 370.77 3.65 -68.89 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: 0.93 Total: 11.20 kcal Atomic # 6 Polarization: -16.84 SS G_CDS: 6.75 Total: -10.09 kcal Atomic # 7 Polarization: -110.46 SS G_CDS: -6.05 Total: -116.52 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -72.55 3.65 -68.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350567547.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.407 kcal (2) G-P(sol) polarization free energy of solvation -72.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds