Wall clock time and date at job start Tue Mar 31 2020 12:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36732 * 127.13953 * 2 1 4 4 C 1.50703 * 126.34469 * 359.97438 * 3 2 1 5 5 H 1.08997 * 109.64462 * 0.02562 * 4 3 2 6 6 C 1.53018 * 109.64418 * 239.57708 * 4 3 2 7 7 C 1.50066 * 110.15068 * 190.88099 * 6 4 3 8 8 C 1.29436 * 124.07579 * 17.13613 * 7 6 4 9 9 C 1.50077 * 124.07430 * 359.50580 * 8 7 6 10 10 C 1.52970 * 110.28692 * 17.02624 * 9 8 7 11 11 N 1.30291 * 107.30942 * 180.02562 * 3 2 1 12 12 N 1.28531 * 110.05134 * 359.72920 * 11 3 2 13 13 C 1.31218 * 109.85960 * 0.45164 * 12 11 3 14 14 N 1.38572 * 126.47235 * 179.82771 * 13 12 11 15 15 C 1.46847 * 111.00308 * 35.75495 * 14 13 12 16 16 C 1.53038 * 109.52355 * 174.16087 * 15 14 13 17 17 C 1.53128 * 109.27619 * 59.18055 * 16 15 14 18 18 C 1.53122 * 109.16155 * 302.34381 * 17 16 15 19 19 H 1.09005 * 109.50180 * 297.67890 * 18 17 16 20 20 C 1.50697 * 109.50323 * 177.59867 * 18 17 16 21 21 H 1.08001 * 119.99515 * 240.00440 * 20 18 17 22 22 C 1.37875 * 120.00038 * 59.99979 * 20 18 17 23 23 N 1.31509 * 120.00051 * 359.97438 * 22 20 18 24 24 Si 1.86801 * 119.99755 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.46992 * 269.99836 * 24 22 20 26 26 H 1.48505 * 109.47285 * 29.99825 * 24 22 20 27 27 H 1.48498 * 109.46991 * 149.99741 * 24 22 20 28 28 C 1.46850 * 110.99569 * 271.54218 * 14 13 12 29 29 H 1.09007 * 109.46929 * 275.24275 * 1 2 3 30 30 H 1.08998 * 109.47009 * 35.23698 * 1 2 3 31 31 H 1.08999 * 109.47621 * 155.24255 * 1 2 3 32 32 H 1.09002 * 109.36420 * 311.09141 * 6 4 3 33 33 H 1.09010 * 109.35436 * 70.67538 * 6 4 3 34 34 H 1.08002 * 117.96550 * 197.11626 * 7 6 4 35 35 H 1.08000 * 117.96624 * 179.53140 * 8 7 6 36 36 H 1.09001 * 109.35679 * 137.36686 * 9 8 7 37 37 H 1.08995 * 109.35623 * 257.08210 * 9 8 7 38 38 H 1.08995 * 109.79238 * 191.08058 * 10 9 8 39 39 H 1.08994 * 109.47568 * 70.45470 * 10 9 8 40 40 H 1.08997 * 109.46205 * 54.14736 * 15 14 13 41 41 H 1.09000 * 109.45286 * 294.17086 * 15 14 13 42 42 H 1.08998 * 109.50431 * 299.24473 * 16 15 14 43 43 H 1.08995 * 109.50473 * 179.11806 * 16 15 14 44 44 H 1.09002 * 109.51894 * 182.43833 * 17 16 15 45 45 H 1.09001 * 109.57502 * 62.28086 * 17 16 15 46 46 H 0.97000 * 120.00020 * 179.97438 * 23 22 20 47 47 H 1.09000 * 109.46230 * 65.83263 * 28 14 13 48 48 H 1.08992 * 109.46670 * 305.85886 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2905 1.0900 0.0000 4 6 1.8621 2.5348 -0.0005 5 1 0.7738 2.5943 -0.0005 6 6 2.4160 3.2351 -1.2432 7 6 2.2265 4.7193 -1.1278 8 6 1.9747 5.3341 -0.0170 9 6 1.8263 4.6473 1.3092 10 6 2.4165 3.2375 1.2453 11 7 3.5162 0.6480 -0.0006 12 7 3.5211 -0.6373 0.0048 13 6 2.2888 -1.0879 -0.0006 14 7 1.8977 -2.4173 -0.0008 15 6 2.8126 -3.2351 0.8058 16 6 2.2715 -4.6633 0.9026 17 6 2.1391 -5.2503 -0.5055 18 6 1.2198 -4.3536 -1.3394 19 1 0.2256 -4.3362 -0.8928 20 6 1.1310 -4.8919 -2.7442 21 1 1.4475 -4.2817 -3.5772 22 6 0.6460 -6.1633 -2.9659 23 7 0.2613 -6.9065 -1.9514 24 14 0.5367 -6.8307 -4.7071 25 1 -0.7890 -6.4927 -5.2845 26 1 1.6077 -6.2240 -5.5380 27 1 0.7047 -8.3060 -4.6832 28 6 1.7914 -2.9343 -1.3711 29 1 -0.3633 0.0939 1.0234 30 1 -0.3633 0.8394 -0.5929 31 1 -0.3634 -0.9332 -0.4303 32 1 3.4787 3.0130 -1.3398 33 1 1.8912 2.8716 -2.1268 34 1 2.3056 5.3115 -2.0276 35 1 1.8640 6.4080 -0.0462 36 1 2.3466 5.2232 2.0745 37 1 0.7689 4.5795 1.5646 38 1 2.1342 2.6784 2.1374 39 1 3.5025 3.3009 1.1773 40 1 2.8945 -2.8092 1.8058 41 1 3.7960 -3.2504 0.3359 42 1 1.2940 -4.6502 1.3847 43 1 2.9586 -5.2739 1.4882 44 1 1.7133 -6.2518 -0.4440 45 1 3.1220 -5.3004 -0.9741 46 1 -0.0803 -7.8009 -2.1074 47 1 2.7796 -2.9511 -1.8307 48 1 1.1317 -2.2900 -1.9522 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350567550.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:02 Heat of formation + Delta-G solvation = 84.168226 kcal Electronic energy + Delta-G solvation = -26968.364395 eV Core-core repulsion = 23445.105897 eV Total energy + Delta-G solvation = -3523.258499 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.78496 -38.83905 -38.17971 -34.80428 -33.97096 -32.46916 -31.43580 -31.03542 -30.05532 -28.09080 -27.40408 -25.07532 -23.93324 -23.74631 -23.10105 -21.67941 -20.70806 -20.34761 -18.67133 -17.91641 -17.29695 -16.50345 -16.15817 -16.13318 -15.53160 -14.88202 -14.62516 -14.19662 -14.01956 -13.72621 -13.58132 -13.41758 -13.15361 -12.87674 -12.82389 -12.62235 -12.57250 -12.49819 -12.38083 -11.84039 -11.37613 -11.16749 -11.01120 -10.99637 -10.83420 -10.76461 -10.59258 -10.30191 -10.20891 -9.97522 -9.94140 -9.64278 -9.32289 -9.23525 -8.88713 -8.83602 -8.37583 -8.02826 -6.05678 -4.12444 1.92130 2.05790 2.43997 3.05540 3.26685 3.34013 3.37538 4.08587 4.19181 4.41113 4.46532 4.50499 4.72637 4.76066 4.98776 5.06427 5.10733 5.16171 5.24629 5.25217 5.37236 5.42948 5.47899 5.53881 5.60271 5.70144 5.77254 5.80422 5.84084 5.91780 5.96721 6.10673 6.16294 6.22720 6.30368 6.37950 6.39390 6.56641 6.63792 6.68227 6.74701 6.87664 7.02959 7.28686 7.37659 7.66886 7.72722 7.93630 8.05968 8.35692 8.90391 8.99392 9.52557 11.00314 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.021959 B = 0.002983 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.783452 B = 9385.314947 C =10059.292443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.472 5.472 3 C 0.167 3.833 4 C 0.010 3.990 5 H 0.085 0.915 6 C -0.083 4.083 7 C -0.148 4.148 8 C -0.161 4.161 9 C -0.090 4.090 10 C -0.107 4.107 11 N -0.283 5.283 12 N -0.323 5.323 13 C 0.369 3.631 14 N -0.466 5.466 15 C 0.079 3.921 16 C -0.118 4.118 17 C -0.114 4.114 18 C 0.058 3.942 19 H 0.036 0.964 20 C -0.517 4.517 21 H 0.054 0.946 22 C 0.065 3.935 23 N -0.887 5.887 24 Si 0.892 3.108 25 H -0.281 1.281 26 H -0.274 1.274 27 H -0.286 1.286 28 C 0.077 3.923 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.101 0.899 32 H 0.089 0.911 33 H 0.073 0.927 34 H 0.106 0.894 35 H 0.103 0.897 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.067 0.933 39 H 0.078 0.922 40 H 0.061 0.939 41 H 0.049 0.951 42 H 0.062 0.938 43 H 0.056 0.944 44 H 0.095 0.905 45 H 0.035 0.965 46 H 0.261 0.739 47 H 0.037 0.963 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.722 19.830 6.609 20.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.165 5.165 3 C -0.101 4.101 4 C -0.011 4.011 5 H 0.104 0.896 6 C -0.121 4.121 7 C -0.166 4.166 8 C -0.179 4.179 9 C -0.127 4.127 10 C -0.145 4.145 11 N -0.123 5.123 12 N -0.167 5.167 13 C 0.012 3.988 14 N -0.192 5.192 15 C -0.048 4.048 16 C -0.155 4.155 17 C -0.152 4.152 18 C 0.039 3.961 19 H 0.054 0.946 20 C -0.556 4.556 21 H 0.073 0.927 22 C -0.136 4.136 23 N -0.525 5.525 24 Si 0.720 3.280 25 H -0.207 1.207 26 H -0.199 1.199 27 H -0.212 1.212 28 C -0.049 4.049 29 H 0.097 0.903 30 H 0.101 0.899 31 H 0.120 0.880 32 H 0.108 0.892 33 H 0.091 0.909 34 H 0.124 0.876 35 H 0.121 0.879 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.085 0.915 39 H 0.097 0.903 40 H 0.080 0.920 41 H 0.067 0.933 42 H 0.080 0.920 43 H 0.075 0.925 44 H 0.113 0.887 45 H 0.054 0.946 46 H 0.071 0.929 47 H 0.055 0.945 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.225 19.577 6.858 20.745 hybrid contribution -0.919 -0.391 -1.336 1.669 sum -0.695 19.186 5.521 19.977 Atomic orbital electron populations 1.22030 0.75449 1.05318 1.03644 1.46155 1.08745 1.06020 1.55612 1.24512 0.87392 0.90997 1.07178 1.19529 1.00236 0.84190 0.97184 0.89644 1.20479 1.02861 0.92085 0.96630 1.22025 1.00693 0.95800 0.98084 1.22036 1.01793 0.99553 0.94488 1.20457 1.01247 0.95254 0.95726 1.21593 1.01816 0.94770 0.96335 1.73881 1.17231 1.03404 1.17805 1.74669 1.16956 1.03000 1.22100 1.22781 0.85497 0.89027 1.01446 1.58936 1.49163 0.94678 1.16435 1.22014 0.93550 0.93601 0.95611 1.21733 1.00426 0.92976 1.00412 1.21705 0.99100 1.03041 0.91345 1.18695 0.95080 0.86544 0.95732 0.94607 1.21066 1.42820 0.99769 0.91937 0.92749 1.24906 0.95035 0.96803 0.96887 1.69876 1.42862 1.09941 1.29846 0.86600 0.78414 0.78143 0.84890 1.20691 1.19920 1.21158 1.22502 0.99947 0.99471 0.82957 0.90313 0.89939 0.88033 0.89227 0.90867 0.87630 0.87897 0.90635 0.90896 0.91470 0.90340 0.92016 0.93295 0.91973 0.92529 0.88674 0.94578 0.92911 0.94456 0.92392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.87 10.82 59.85 0.65 1.52 16 2 N -0.47 -7.14 3.21 -121.46 -0.39 -7.53 16 3 C 0.17 2.43 6.58 -154.02 -1.01 1.42 16 4 C 0.01 0.10 2.61 -91.55 -0.24 -0.14 16 5 H 0.09 0.75 7.08 -51.93 -0.37 0.38 16 6 C -0.08 -0.82 5.43 -28.18 -0.15 -0.98 16 7 C -0.15 -1.23 9.80 -35.90 -0.35 -1.58 16 8 C -0.16 -1.21 9.81 -35.89 -0.35 -1.57 16 9 C -0.09 -0.65 6.11 -28.20 -0.17 -0.82 16 10 C -0.11 -1.00 5.30 -26.54 -0.14 -1.14 16 11 N -0.28 -5.07 12.11 32.99 0.40 -4.67 16 12 N -0.32 -6.42 11.69 30.31 0.35 -6.07 16 13 C 0.37 6.80 6.71 -318.88 -2.14 4.66 16 14 N -0.47 -8.89 4.64 -174.55 -0.81 -9.70 16 15 C 0.08 1.47 5.09 -3.83 -0.02 1.45 16 16 C -0.12 -2.22 6.09 -26.65 -0.16 -2.39 16 17 C -0.11 -2.60 5.02 -26.60 -0.13 -2.73 16 18 C 0.06 1.40 2.26 -91.69 -0.21 1.19 16 19 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 20 C -0.52 -13.74 8.56 -34.44 -0.29 -14.04 16 21 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 22 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 23 N -0.89 -24.43 11.35 55.43 0.63 -23.80 16 24 Si 0.89 20.80 29.54 -169.99 -5.02 15.78 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 27 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 28 C 0.08 1.63 4.62 -3.83 -0.02 1.62 16 29 H 0.08 0.73 8.14 -51.92 -0.42 0.31 16 30 H 0.08 0.69 7.47 -51.93 -0.39 0.30 16 31 H 0.10 1.25 8.11 -51.93 -0.42 0.83 16 32 H 0.09 1.03 8.04 -51.93 -0.42 0.62 16 33 H 0.07 0.72 8.14 -51.92 -0.42 0.29 16 34 H 0.11 0.75 8.06 -52.49 -0.42 0.33 16 35 H 0.10 0.64 8.06 -52.49 -0.42 0.22 16 36 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.08 0.84 8.13 -51.93 -0.42 0.41 16 40 H 0.06 1.07 8.10 -51.93 -0.42 0.65 16 41 H 0.05 0.95 8.06 -51.93 -0.42 0.54 16 42 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 43 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 44 H 0.09 2.42 6.15 -51.93 -0.32 2.10 16 45 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 46 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 47 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 48 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 LS Contribution 376.81 15.07 5.68 5.68 Total: -1.00 -30.00 376.81 -12.22 -42.22 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -8.21 Total: -0.02 kcal Atomic # 6 Polarization: -7.03 SS G_CDS: -4.85 Total: -11.88 kcal Atomic # 7 Polarization: -51.96 SS G_CDS: 0.18 Total: -51.78 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.00 -12.22 -42.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350567550.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.385 kcal (2) G-P(sol) polarization free energy of solvation -30.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.217 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds