Wall clock time and date at job start Tue Mar 31 2020 12:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36732 * 127.13953 * 2 1 4 4 C 1.50703 * 126.34469 * 359.97438 * 3 2 1 5 5 H 1.08997 * 109.64462 * 0.02562 * 4 3 2 6 6 C 1.53018 * 109.64418 * 239.57708 * 4 3 2 7 7 C 1.50066 * 110.15068 * 190.88099 * 6 4 3 8 8 C 1.29436 * 124.07579 * 17.13613 * 7 6 4 9 9 C 1.50077 * 124.07430 * 359.50580 * 8 7 6 10 10 C 1.52970 * 110.28692 * 17.02624 * 9 8 7 11 11 N 1.30291 * 107.30942 * 180.02562 * 3 2 1 12 12 N 1.28531 * 110.05134 * 359.72920 * 11 3 2 13 13 C 1.31218 * 109.85960 * 0.45164 * 12 11 3 14 14 N 1.38572 * 126.47235 * 179.82771 * 13 12 11 15 15 C 1.46847 * 111.00308 * 35.75495 * 14 13 12 16 16 C 1.53038 * 109.52355 * 174.16087 * 15 14 13 17 17 C 1.53128 * 109.27619 * 59.18055 * 16 15 14 18 18 C 1.53122 * 109.16155 * 302.34381 * 17 16 15 19 19 H 1.09005 * 109.50180 * 297.67890 * 18 17 16 20 20 C 1.50697 * 109.50323 * 177.59867 * 18 17 16 21 21 H 1.08001 * 119.99515 * 240.00440 * 20 18 17 22 22 C 1.37875 * 120.00038 * 59.99979 * 20 18 17 23 23 N 1.31509 * 120.00051 * 359.97438 * 22 20 18 24 24 Si 1.86801 * 119.99755 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.46992 * 269.99836 * 24 22 20 26 26 H 1.48505 * 109.47285 * 29.99825 * 24 22 20 27 27 H 1.48498 * 109.46991 * 149.99741 * 24 22 20 28 28 C 1.46850 * 110.99569 * 271.54218 * 14 13 12 29 29 H 1.09007 * 109.46929 * 275.24275 * 1 2 3 30 30 H 1.08998 * 109.47009 * 35.23698 * 1 2 3 31 31 H 1.08999 * 109.47621 * 155.24255 * 1 2 3 32 32 H 1.09002 * 109.36420 * 311.09141 * 6 4 3 33 33 H 1.09010 * 109.35436 * 70.67538 * 6 4 3 34 34 H 1.08002 * 117.96550 * 197.11626 * 7 6 4 35 35 H 1.08000 * 117.96624 * 179.53140 * 8 7 6 36 36 H 1.09001 * 109.35679 * 137.36686 * 9 8 7 37 37 H 1.08995 * 109.35623 * 257.08210 * 9 8 7 38 38 H 1.08995 * 109.79238 * 191.08058 * 10 9 8 39 39 H 1.08994 * 109.47568 * 70.45470 * 10 9 8 40 40 H 1.08997 * 109.46205 * 54.14736 * 15 14 13 41 41 H 1.09000 * 109.45286 * 294.17086 * 15 14 13 42 42 H 1.08998 * 109.50431 * 299.24473 * 16 15 14 43 43 H 1.08995 * 109.50473 * 179.11806 * 16 15 14 44 44 H 1.09002 * 109.51894 * 182.43833 * 17 16 15 45 45 H 1.09001 * 109.57502 * 62.28086 * 17 16 15 46 46 H 0.97000 * 120.00020 * 179.97438 * 23 22 20 47 47 H 1.09000 * 109.46230 * 65.83263 * 28 14 13 48 48 H 1.08992 * 109.46670 * 305.85886 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2905 1.0900 0.0000 4 6 1.8621 2.5348 -0.0005 5 1 0.7738 2.5943 -0.0005 6 6 2.4160 3.2351 -1.2432 7 6 2.2265 4.7193 -1.1278 8 6 1.9747 5.3341 -0.0170 9 6 1.8263 4.6473 1.3092 10 6 2.4165 3.2375 1.2453 11 7 3.5162 0.6480 -0.0006 12 7 3.5211 -0.6373 0.0048 13 6 2.2888 -1.0879 -0.0006 14 7 1.8977 -2.4173 -0.0008 15 6 2.8126 -3.2351 0.8058 16 6 2.2715 -4.6633 0.9026 17 6 2.1391 -5.2503 -0.5055 18 6 1.2198 -4.3536 -1.3394 19 1 0.2256 -4.3362 -0.8928 20 6 1.1310 -4.8919 -2.7442 21 1 1.4475 -4.2817 -3.5772 22 6 0.6460 -6.1633 -2.9659 23 7 0.2613 -6.9065 -1.9514 24 14 0.5367 -6.8307 -4.7071 25 1 -0.7890 -6.4927 -5.2845 26 1 1.6077 -6.2240 -5.5380 27 1 0.7047 -8.3060 -4.6832 28 6 1.7914 -2.9343 -1.3711 29 1 -0.3633 0.0939 1.0234 30 1 -0.3633 0.8394 -0.5929 31 1 -0.3634 -0.9332 -0.4303 32 1 3.4787 3.0130 -1.3398 33 1 1.8912 2.8716 -2.1268 34 1 2.3056 5.3115 -2.0276 35 1 1.8640 6.4080 -0.0462 36 1 2.3466 5.2232 2.0745 37 1 0.7689 4.5795 1.5646 38 1 2.1342 2.6784 2.1374 39 1 3.5025 3.3009 1.1773 40 1 2.8945 -2.8092 1.8058 41 1 3.7960 -3.2504 0.3359 42 1 1.2940 -4.6502 1.3847 43 1 2.9586 -5.2739 1.4882 44 1 1.7133 -6.2518 -0.4440 45 1 3.1220 -5.3004 -0.9741 46 1 -0.0803 -7.8009 -2.1074 47 1 2.7796 -2.9511 -1.8307 48 1 1.1317 -2.2900 -1.9522 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350567550.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:01 Heat of formation + Delta-G solvation = 70.634161 kcal Electronic energy + Delta-G solvation = -26968.951277 eV Core-core repulsion = 23445.105897 eV Total energy + Delta-G solvation = -3523.845380 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.07591 -40.06176 -39.32661 -36.03905 -35.71180 -33.87632 -32.68913 -31.87037 -31.71110 -29.35725 -28.44811 -27.02461 -25.36612 -24.84124 -23.86599 -23.33297 -22.14023 -21.47994 -20.34187 -18.87367 -18.61036 -17.94072 -17.43404 -17.07612 -17.03299 -16.47809 -15.84028 -15.66920 -15.31281 -14.77403 -14.69624 -14.50197 -14.42939 -14.24362 -14.21699 -13.91777 -13.67699 -13.46862 -13.29881 -13.18511 -12.89302 -12.74776 -12.67068 -12.60334 -12.01111 -11.95796 -11.86947 -11.75814 -11.58634 -11.42849 -11.28742 -11.15748 -11.05092 -10.77129 -10.46411 -10.26149 -9.84121 -9.53312 -8.11169 -6.24892 0.66409 1.24420 1.40716 1.42836 1.45205 1.52072 1.72381 2.41184 2.74678 3.16739 3.21161 3.60794 3.77337 3.81963 3.90535 4.02874 4.08618 4.21057 4.26606 4.27864 4.35256 4.38723 4.42097 4.49537 4.49838 4.58042 4.64468 4.67974 4.74931 4.81982 4.83266 4.94018 4.99256 5.00674 5.02624 5.07510 5.09304 5.25647 5.27688 5.38872 5.43527 5.58661 5.62137 5.73781 5.79717 5.95722 6.08905 6.09228 6.27977 6.34859 6.83968 7.42972 7.67083 8.93604 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.021959 B = 0.002983 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.783452 B = 9385.314947 C =10059.292443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.469 5.469 3 C 0.189 3.811 4 C 0.010 3.990 5 H 0.112 0.888 6 C -0.080 4.080 7 C -0.162 4.162 8 C -0.153 4.153 9 C -0.087 4.087 10 C -0.104 4.104 11 N -0.319 5.319 12 N -0.353 5.353 13 C 0.347 3.653 14 N -0.460 5.460 15 C 0.084 3.916 16 C -0.105 4.105 17 C -0.108 4.108 18 C 0.061 3.939 19 H 0.013 0.987 20 C -0.539 4.539 21 H 0.047 0.953 22 C 0.022 3.978 23 N -0.910 5.910 24 Si 0.951 3.049 25 H -0.273 1.273 26 H -0.274 1.274 27 H -0.282 1.282 28 C 0.096 3.904 29 H 0.102 0.898 30 H 0.115 0.885 31 H 0.086 0.914 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.116 0.884 35 H 0.122 0.878 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.066 0.934 39 H 0.059 0.941 40 H 0.079 0.921 41 H 0.036 0.964 42 H 0.063 0.937 43 H 0.081 0.919 44 H 0.069 0.931 45 H 0.023 0.977 46 H 0.263 0.737 47 H 0.017 0.983 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.967 22.073 7.153 23.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.162 5.162 3 C -0.079 4.079 4 C -0.011 4.011 5 H 0.130 0.870 6 C -0.118 4.118 7 C -0.180 4.180 8 C -0.171 4.171 9 C -0.124 4.124 10 C -0.142 4.142 11 N -0.158 5.158 12 N -0.198 5.198 13 C -0.010 4.010 14 N -0.185 5.185 15 C -0.042 4.042 16 C -0.143 4.143 17 C -0.146 4.146 18 C 0.042 3.958 19 H 0.031 0.969 20 C -0.577 4.577 21 H 0.066 0.934 22 C -0.178 4.178 23 N -0.548 5.548 24 Si 0.777 3.223 25 H -0.199 1.199 26 H -0.198 1.198 27 H -0.207 1.207 28 C -0.031 4.031 29 H 0.120 0.880 30 H 0.134 0.866 31 H 0.105 0.895 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.134 0.866 35 H 0.140 0.860 36 H 0.107 0.893 37 H 0.109 0.891 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.098 0.902 41 H 0.054 0.946 42 H 0.082 0.918 43 H 0.099 0.901 44 H 0.088 0.912 45 H 0.042 0.958 46 H 0.072 0.928 47 H 0.035 0.965 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.033 21.838 7.410 23.084 hybrid contribution -0.539 -0.993 -1.478 1.861 sum -1.572 20.845 5.932 21.729 Atomic orbital electron populations 1.22370 0.72948 1.06016 1.05751 1.46404 1.10188 1.05048 1.54511 1.25330 0.86446 0.92400 1.03737 1.19825 1.01806 0.81425 0.98025 0.86974 1.20401 1.01377 0.93623 0.96356 1.21991 1.02268 0.94579 0.99135 1.22263 1.00148 1.00536 0.94123 1.20492 1.02292 0.93554 0.96025 1.21562 1.00821 0.96292 0.95567 1.73821 1.19264 1.02704 1.20031 1.74560 1.18229 1.04197 1.22767 1.22668 0.86028 0.89106 1.03215 1.58871 1.49405 0.95380 1.14859 1.21969 0.92723 0.93295 0.96253 1.21614 1.01274 0.93427 0.98008 1.21531 0.97695 1.01703 0.93669 1.18567 0.94231 0.88316 0.94663 0.96897 1.21380 1.43103 1.00225 0.93034 0.93436 1.25606 0.94719 0.97019 1.00434 1.69990 1.43205 1.10141 1.31497 0.85661 0.78521 0.77489 0.80609 1.19902 1.19838 1.20731 1.22112 0.98413 0.98082 0.84479 0.87973 0.86620 0.89518 0.91582 0.90937 0.86570 0.86020 0.89322 0.89104 0.91574 0.92182 0.90243 0.94574 0.91793 0.90080 0.91244 0.95843 0.92809 0.96487 0.92353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.39 10.82 127.77 1.38 2.78 16 2 N -0.47 -13.64 3.21 -538.19 -1.73 -15.37 16 3 C 0.19 5.33 6.58 137.64 0.91 6.23 16 4 C 0.01 0.19 2.61 -11.40 -0.03 0.16 16 5 H 0.11 1.54 7.08 -2.39 -0.02 1.52 16 6 C -0.08 -1.48 5.43 29.66 0.16 -1.32 16 7 C -0.16 -2.31 9.80 27.04 0.27 -2.04 16 8 C -0.15 -1.80 9.81 27.05 0.27 -1.54 16 9 C -0.09 -0.95 6.11 29.64 0.18 -0.77 16 10 C -0.10 -1.74 5.30 30.72 0.16 -1.58 16 11 N -0.32 -11.51 12.11 -49.54 -0.60 -12.11 16 12 N -0.35 -14.26 11.69 -58.01 -0.68 -14.94 16 13 C 0.35 12.81 6.71 260.11 1.75 14.55 16 14 N -0.46 -17.67 4.64 -706.15 -3.28 -20.94 16 15 C 0.08 3.12 5.09 86.33 0.44 3.56 16 16 C -0.11 -3.97 6.09 30.65 0.19 -3.78 16 17 C -0.11 -5.06 5.02 30.68 0.15 -4.90 16 18 C 0.06 3.03 2.26 -11.49 -0.03 3.00 16 19 H 0.01 0.69 8.14 -2.38 -0.02 0.67 16 20 C -0.54 -29.36 8.56 25.60 0.22 -29.14 16 21 H 0.05 2.59 7.74 -2.91 -0.02 2.56 16 22 C 0.02 1.19 5.30 84.65 0.45 1.64 16 23 N -0.91 -50.94 11.35 21.45 0.24 -50.70 16 24 Si 0.95 42.98 29.54 68.60 2.03 45.01 16 25 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 26 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 27 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 28 C 0.10 4.18 4.62 86.33 0.40 4.58 16 29 H 0.10 1.57 8.14 -2.38 -0.02 1.56 16 30 H 0.12 1.51 7.47 -2.39 -0.02 1.49 16 31 H 0.09 2.03 8.11 -2.39 -0.02 2.01 16 32 H 0.07 1.54 8.04 -2.39 -0.02 1.52 16 33 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 34 H 0.12 1.40 8.06 -2.91 -0.02 1.38 16 35 H 0.12 1.04 8.06 -2.91 -0.02 1.01 16 36 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.06 1.23 8.13 -2.39 -0.02 1.21 16 40 H 0.08 2.68 8.10 -2.39 -0.02 2.66 16 41 H 0.04 1.43 8.06 -2.39 -0.02 1.41 16 42 H 0.06 2.39 8.14 -2.39 -0.02 2.38 16 43 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 44 H 0.07 3.63 6.15 -2.39 -0.01 3.61 16 45 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 46 H 0.26 13.99 8.31 -92.71 -0.77 13.22 16 47 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 48 H 0.06 2.50 8.10 -2.39 -0.02 2.48 16 Total: -1.00 -66.84 376.81 3.77 -63.07 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: 0.92 Total: 14.55 kcal Atomic # 6 Polarization: -15.43 SS G_CDS: 6.86 Total: -8.57 kcal Atomic # 7 Polarization: -108.02 SS G_CDS: -6.04 Total: -114.06 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Total: -66.84 3.77 -63.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350567550.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.707 kcal (2) G-P(sol) polarization free energy of solvation -66.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds