Wall clock time and date at job start Tue Mar 31 2020 11:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46856 * 2 1 4 4 C 1.52999 * 109.47268 * 240.00525 * 2 1 3 5 5 C 1.50704 * 109.46938 * 64.99644 * 4 2 1 6 6 H 1.07999 * 120.00409 * 0.02562 * 5 4 2 7 7 C 1.37874 * 119.99595 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00504 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 120.00085 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.46933 * 59.99632 * 9 7 5 11 11 H 1.48496 * 109.47399 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.46959 * 300.00060 * 9 7 5 13 13 C 1.50692 * 109.47313 * 120.00316 * 2 1 3 14 14 N 1.30295 * 126.35190 * 59.97359 * 13 2 1 15 15 N 1.28524 * 110.06033 * 180.02562 * 14 13 2 16 16 C 1.31218 * 109.85726 * 0.02562 * 15 14 13 17 17 N 1.38579 * 126.47153 * 179.97438 * 16 15 14 18 18 C 1.47702 * 111.00039 * 0.02562 * 17 16 15 19 19 C 1.55797 * 106.67970 * 240.23265 * 18 17 16 20 20 H 1.09009 * 113.25366 * 212.11664 * 19 18 17 21 21 C 1.53167 * 106.07778 * 87.77614 * 19 18 17 22 22 C 1.47769 * 113.60327 * 210.86349 * 21 19 18 23 23 C 1.29190 * 124.65535 * 16.81222 * 22 21 19 24 24 C 1.49633 * 123.38555 * 358.36950 * 23 22 21 25 25 C 1.50045 * 113.21939 * 12.91243 * 24 23 22 26 26 H 1.09001 * 108.71865 * 199.81085 * 25 24 23 27 27 C 1.48045 * 110.70494 * 239.72237 * 17 16 15 28 28 N 1.36457 * 107.05541 * 0.22722 * 16 15 14 29 29 C 1.46502 * 127.13572 * 179.77571 * 28 16 15 30 30 H 1.08997 * 109.47374 * 59.99608 * 1 2 3 31 31 H 1.08998 * 109.47064 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47124 * 299.99585 * 1 2 3 33 33 H 1.08994 * 109.47460 * 184.99595 * 4 2 1 34 34 H 1.09005 * 109.46928 * 304.99904 * 4 2 1 35 35 H 0.96999 * 120.00596 * 180.02562 * 8 7 5 36 36 H 1.09004 * 110.01856 * 120.92963 * 18 17 16 37 37 H 1.09000 * 110.01697 * 359.53644 * 18 17 16 38 38 H 1.09000 * 108.80092 * 330.68201 * 21 19 18 39 39 H 1.08999 * 108.79773 * 88.92789 * 21 19 18 40 40 H 1.07998 * 117.68397 * 197.38687 * 22 21 19 41 41 H 1.08002 * 118.31020 * 178.65800 * 23 22 21 42 42 H 1.09000 * 108.73015 * 133.87988 * 24 23 22 43 43 H 1.09001 * 108.73517 * 252.07052 * 24 23 22 44 44 H 1.08997 * 110.90533 * 27.33439 * 27 17 16 45 45 H 1.08998 * 110.11805 * 264.49757 * 27 17 16 46 46 H 1.08999 * 109.47029 * 90.02577 * 29 28 16 47 47 H 1.08995 * 109.46839 * 210.02051 * 29 28 16 48 48 H 1.09000 * 109.46880 * 330.02283 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 1.6413 0.0573 -2.4766 6 1 1.0805 0.9748 -2.3756 7 6 1.9923 -0.4019 -3.7283 8 7 2.6755 -1.5189 -3.8513 9 14 1.4987 0.5632 -5.2496 10 1 2.0917 1.9232 -5.1870 11 1 1.9936 -0.1367 -6.4622 12 1 0.0188 0.6708 -5.3090 13 6 2.0323 -0.7104 1.2303 14 7 1.7947 -1.9489 1.5582 15 7 2.3756 -2.2299 2.6697 16 6 3.0199 -1.1769 3.1146 17 7 3.7619 -1.0978 4.2823 18 6 3.7496 -2.3856 5.0056 19 6 3.1149 -2.1086 6.4012 20 1 3.5182 -2.7426 7.1909 21 6 1.6029 -2.2729 6.2197 22 6 0.8025 -1.4113 7.1144 23 6 1.2610 -0.3826 7.7472 24 6 2.6906 0.0544 7.6819 25 6 3.4651 -0.6174 6.5863 26 1 4.5289 -0.5358 6.8092 27 6 3.2153 -0.0553 5.1801 28 7 2.8167 -0.1729 2.2131 29 6 3.3344 1.1958 2.2820 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 3.1263 -0.7993 -1.2057 34 1 1.6054 -1.7197 -1.2953 35 1 2.9228 -1.8418 -4.7319 36 1 4.7678 -2.7558 5.1256 37 1 3.1491 -3.1139 4.4605 38 1 1.3422 -2.0146 5.1934 39 1 1.3395 -3.3160 6.3948 40 1 -0.2377 -1.6645 7.2563 41 1 0.5783 0.1889 8.3586 42 1 2.7202 1.1322 7.5214 43 1 3.1693 -0.1702 8.6350 44 1 2.1485 0.0864 5.0075 45 1 3.7553 0.8811 5.0398 46 1 4.3029 1.2435 1.7841 47 1 2.6380 1.8730 1.7875 48 1 3.4475 1.4894 3.3256 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001351181763.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:48 Heat of formation + Delta-G solvation = 98.410301 kcal Electronic energy + Delta-G solvation = -27265.318911 eV Core-core repulsion = 23742.677995 eV Total energy + Delta-G solvation = -3522.640916 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.68244 -40.58498 -36.41009 -35.29574 -34.45045 -32.31548 -32.03480 -31.34464 -28.45163 -27.70871 -27.26864 -26.90115 -24.58438 -24.00648 -22.36727 -21.85008 -21.25267 -20.47927 -19.01242 -17.52108 -17.13073 -16.64058 -16.39887 -16.23121 -15.54528 -15.33499 -14.53100 -14.34850 -14.06826 -14.00874 -13.66909 -13.46313 -13.21912 -13.03926 -12.86141 -12.75546 -12.47091 -12.25124 -12.07878 -11.93264 -11.73776 -11.30342 -11.15005 -10.94592 -10.91271 -10.75356 -10.59937 -10.47209 -10.38444 -10.28111 -9.94048 -9.75642 -9.69754 -9.24248 -9.19503 -9.10865 -8.35111 -7.88575 -5.98672 -4.02625 2.04254 2.14425 2.52646 3.30920 3.33076 3.38436 3.39719 3.75313 4.07070 4.19126 4.35132 4.44826 4.69375 4.85955 4.90946 4.92343 4.99311 5.04874 5.10777 5.14370 5.17816 5.21517 5.36184 5.39055 5.41534 5.48640 5.53025 5.58406 5.65727 5.70718 5.72735 5.85798 5.92795 6.03625 6.05990 6.14093 6.25115 6.30838 6.42167 6.57684 6.70815 6.71018 6.82130 6.92699 7.05924 7.43421 7.64779 7.80581 8.00693 8.36345 9.02846 9.25863 9.60763 11.12342 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.028266 B = 0.002886 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.334460 B = 9699.652742 C = 9764.006814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.001 4.001 3 H 0.071 0.929 4 C 0.039 3.961 5 C -0.522 4.522 6 H 0.058 0.942 7 C 0.059 3.941 8 N -0.890 5.890 9 Si 0.892 3.108 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.276 1.276 13 C 0.213 3.787 14 N -0.283 5.283 15 N -0.324 5.324 16 C 0.329 3.671 17 N -0.439 5.439 18 C 0.045 3.955 19 C -0.099 4.099 20 H 0.100 0.900 21 C -0.095 4.095 22 C -0.145 4.145 23 C -0.164 4.164 24 C -0.075 4.075 25 C -0.092 4.092 26 H 0.084 0.916 27 C 0.047 3.953 28 N -0.485 5.485 29 C 0.077 3.923 30 H 0.074 0.926 31 H 0.060 0.940 32 H 0.030 0.970 33 H 0.014 0.986 34 H 0.032 0.968 35 H 0.262 0.738 36 H 0.087 0.913 37 H 0.100 0.900 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.101 0.899 41 H 0.104 0.896 42 H 0.073 0.927 43 H 0.077 0.923 44 H 0.059 0.941 45 H 0.087 0.913 46 H 0.081 0.919 47 H 0.090 0.910 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.201 5.330 24.875 25.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.023 4.023 3 H 0.090 0.910 4 C 0.001 3.999 5 C -0.560 4.560 6 H 0.076 0.924 7 C -0.142 4.142 8 N -0.529 5.529 9 Si 0.720 3.280 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.201 1.201 13 C -0.055 4.055 14 N -0.120 5.120 15 N -0.169 5.169 16 C -0.028 4.028 17 N -0.162 5.162 18 C -0.082 4.082 19 C -0.118 4.118 20 H 0.118 0.882 21 C -0.132 4.132 22 C -0.163 4.163 23 C -0.182 4.182 24 C -0.112 4.112 25 C -0.111 4.111 26 H 0.102 0.898 27 C -0.080 4.080 28 N -0.180 5.180 29 C -0.066 4.066 30 H 0.093 0.907 31 H 0.079 0.921 32 H 0.049 0.951 33 H 0.032 0.968 34 H 0.050 0.950 35 H 0.071 0.929 36 H 0.105 0.895 37 H 0.118 0.882 38 H 0.096 0.904 39 H 0.094 0.906 40 H 0.119 0.881 41 H 0.122 0.878 42 H 0.091 0.909 43 H 0.096 0.904 44 H 0.077 0.923 45 H 0.105 0.895 46 H 0.099 0.901 47 H 0.109 0.891 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.276 3.925 24.526 24.871 hybrid contribution -0.252 1.708 -0.667 1.851 sum 1.024 5.633 23.859 24.536 Atomic orbital electron populations 1.21673 0.93666 1.02488 1.00503 1.19978 0.96155 0.97571 0.88556 0.91039 1.19093 0.96169 0.96244 0.88364 1.21105 1.35653 1.08472 0.90756 0.92411 1.25002 0.95155 0.95020 0.99065 1.69970 1.38303 1.20948 1.23669 0.86667 0.78947 0.79973 0.82451 1.20319 1.21317 1.20150 1.25572 0.94694 0.91821 0.93364 1.73983 1.19883 1.11030 1.07097 1.74397 1.12019 1.22194 1.08246 1.22596 0.99410 0.87060 0.93703 1.60662 1.45630 1.08388 1.01540 1.23407 1.02627 0.89768 0.92417 1.22558 0.95544 0.96259 0.97473 0.88223 1.20158 0.93340 0.99833 0.99831 1.21514 0.99903 0.96784 0.98070 1.21822 0.96829 0.98342 1.01255 1.19549 0.93164 1.00303 0.98211 1.21232 1.01111 0.95061 0.93724 0.89804 1.23011 0.99118 0.94870 0.90989 1.46099 1.41382 1.11869 1.18651 1.22072 1.01059 0.79681 1.03836 0.90689 0.92059 0.95106 0.96805 0.94976 0.92853 0.89503 0.88170 0.90419 0.90555 0.88103 0.87760 0.90867 0.90445 0.92279 0.89522 0.90073 0.89111 0.89809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.39 8.99 37.16 0.33 -2.05 16 2 C 0.00 -0.03 2.70 -91.78 -0.25 -0.28 16 3 H 0.07 1.35 6.95 -51.93 -0.36 0.99 16 4 C 0.04 1.02 4.43 -27.88 -0.12 0.90 16 5 C -0.52 -14.26 8.41 -34.44 -0.29 -14.55 16 6 H 0.06 1.49 7.06 -52.49 -0.37 1.12 16 7 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 8 N -0.89 -26.93 13.29 55.43 0.74 -26.20 16 9 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 13 C 0.21 4.32 6.58 -154.01 -1.01 3.30 16 14 N -0.28 -6.30 12.18 32.99 0.40 -5.89 16 15 N -0.32 -6.49 10.41 30.32 0.32 -6.17 16 16 C 0.33 5.56 6.56 -318.87 -2.09 3.47 16 17 N -0.44 -5.74 5.26 -170.88 -0.90 -6.64 16 18 C 0.04 0.52 5.97 -1.89 -0.01 0.51 16 19 C -0.10 -0.89 3.89 -88.37 -0.34 -1.24 16 20 H 0.10 0.74 8.14 -51.92 -0.42 0.32 16 21 C -0.09 -0.98 4.61 -29.18 -0.13 -1.11 16 22 C -0.14 -1.35 9.71 -36.91 -0.36 -1.71 16 23 C -0.16 -1.33 9.88 -36.04 -0.36 -1.68 16 24 C -0.07 -0.52 5.59 -29.86 -0.17 -0.68 16 25 C -0.09 -0.75 2.64 -91.16 -0.24 -0.99 16 26 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 27 C 0.05 0.48 4.44 -2.94 -0.01 0.47 16 28 N -0.49 -8.16 3.21 -121.46 -0.39 -8.55 16 29 C 0.08 0.92 10.80 59.85 0.65 1.56 16 30 H 0.07 1.44 6.95 -51.93 -0.36 1.08 16 31 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.03 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 36 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.10 1.40 5.92 -51.93 -0.31 1.10 16 38 H 0.08 1.04 6.58 -51.93 -0.34 0.70 16 39 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.10 0.88 8.06 -52.49 -0.42 0.46 16 41 H 0.10 0.72 8.06 -52.49 -0.42 0.30 16 42 H 0.07 0.44 8.11 -51.93 -0.42 0.02 16 43 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.06 0.70 7.26 -51.93 -0.38 0.33 16 45 H 0.09 0.75 6.70 -51.93 -0.35 0.40 16 46 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 47 H 0.09 0.98 7.24 -51.93 -0.38 0.60 16 48 H 0.08 0.77 5.45 -51.93 -0.28 0.49 16 LS Contribution 369.90 15.07 5.57 5.57 Total: -1.00 -33.18 369.90 -11.54 -44.72 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -7.75 Total: -0.66 kcal Atomic # 6 Polarization: -7.98 SS G_CDS: -4.51 Total: -12.49 kcal Atomic # 7 Polarization: -53.62 SS G_CDS: 0.16 Total: -53.45 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.18 -11.54 -44.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351181763.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.134 kcal (2) G-P(sol) polarization free energy of solvation -33.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds